PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000262605	[[43104525, 43104631], [43108624, 43109084], [43112976, 43113170], [43115235, 43115346], [43117903, 43123244]]	[[43108639, 43109084], [43112976, 43113170], [43115235, 43115346], [43117903, 43118182]]
ENST00000372904	[[43104527, 43104631], [43107263, 43107287], [43108624, 43109084], [43112976, 43113170], [43115235, 43115346], [43117903, 43123244]]	[[43108639, 43109084], [43112976, 43113170], [43115235, 43115346], [43117903, 43118182]]
ENST00000372906	[[43104543, 43104631], [43108607, 43109084], [43117903, 43118477]]	[[43108639, 43109084], [43117903, 43117923]]
ENST00000456317	[[43104559, 43104631], [43108624, 43109084], [43112976, 43113068], [43115235, 43115346], [43117903, 43118094]]	[[43108639, 43109084], [43112976, 43113068], [43115235, 43115346], [43117903, 43118094]]
ENST00000461134	[[43114444, 43115346], [43117903, 43120456]]	None
NM_001261839	[[43104525, 43104631], [43108624, 43109084], [43112976, 43113068], [43115235, 43115346], [43117903, 43123244]]	[[43108639, 43109084], [43112976, 43113068], [43115235, 43115346], [43117903, 43118182]]
NM_001039199	[[43104525, 43104631], [43108624, 43109084], [43112976, 43113170], [43115235, 43115346], [43117903, 43123244]]	[[43108639, 43109084], [43112976, 43113170], [43115235, 43115346], [43117903, 43118182]]
NM_024331	[[43104525, 43104631], [43107263, 43107287], [43108624, 43109084], [43112976, 43113170], [43115235, 43115346], [43117903, 43123244]]	[[43108639, 43109084], [43112976, 43113170], [43115235, 43115346], [43117903, 43118182]]

Promoter

Chrom	Start	End	Description
chr20	43104508	43104540	CAGE_peak_1_at_TTPAL_5end
chr20	43104541	43104576	CAGE_peak_2_at_TTPAL_5end
chr20	43108534	43108543	CAGE_peak_5_at_TTPAL_5end
chr20	43108553	43108569	CAGE_peak_3_at_TTPAL_5end
chr20	43108611	43108614	CAGE_peak_7_at_TTPAL_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr20	GH20I044475	44475110	44477563	2.07	[{'connected_gene': 'TTPAL', 'score': 550.77}, {'connected_gene': 'SYS1', 'score': 18.97}, {'connected_gene': 'PIGT', 'score': 9.81}, {'connected_gene': 'PKIG', 'score': 5.2}, {'connected_gene': 'GC20P044473', 'score': 0.77}, {'connected_gene': 'PIR42438', 'score': 0.44}]
chr20	GH20I044571	44571318	44574618	1.36	[{'connected_gene': 'TTPAL', 'score': 4.98}, {'connected_gene': 'PKIG', 'score': 0.26}, {'connected_gene': 'PIR61280', 'score': 0.25}, {'connected_gene': 'GC20M044554', 'score': 0.19}]
chr20	GH20I044569	44569820	44571055	0.46	[{'connected_gene': 'TTPAL', 'score': 5.13}, {'connected_gene': 'PKIG', 'score': 0.28}, {'connected_gene': 'PIR61280', 'score': 0.23}, {'connected_gene': 'GC20M044554', 'score': 0.18}]
chr20	GH20I044567	44566795	44567861	0.31	[{'connected_gene': 'TTPAL', 'score': 4.96}, {'connected_gene': 'PKIG', 'score': 0.28}, {'connected_gene': 'PIR61280', 'score': 0.23}, {'connected_gene': 'GC20M044554', 'score': 0.18}]
chr20	GH20I044536	44536401	44536800	0.38	[{'connected_gene': 'TTPAL', 'score': 5.01}, {'connected_gene': 'PKIG', 'score': 0.77}, {'connected_gene': 'PIR61280', 'score': 0.18}]
chr20	GH20I044548	44548084	44549827	1.07	[{'connected_gene': 'TTPAL', 'score': 5.26}, {'connected_gene': 'PKIG', 'score': 0.37}, {'connected_gene': 'PIR61280', 'score': 0.19}]
chr20	GH20I044608	44608490	44612180	1.72	[{'connected_gene': 'KCNK15', 'score': 12.11}, {'connected_gene': 'PKIG', 'score': 11.08}, {'connected_gene': 'SYS1', 'score': 9.78}, {'connected_gene': 'TTPAL', 'score': 5.19}, {'connected_gene': 'ENSG00000132832', 'score': 4.4}, {'connected_gene': 'ADA', 'score': 3.07}, {'connected_gene': 'OSER1', 'score': 1.93}, {'connected_gene': 'STK4', 'score': 1.36}, {'connected_gene': 'PIR61280', 'score': 0.39}, {'connected_gene': 'GC20M044554', 'score': 0.28}]
chr20	GH20I044165	44165339	44168193	0.99	[{'connected_gene': 'JPH2', 'score': 11.24}, {'connected_gene': 'FITM2', 'score': 10.76}, {'connected_gene': 'OSER1', 'score': 7.3}, {'connected_gene': 'TTPAL', 'score': 6.35}, {'connected_gene': 'GC20P044130', 'score': 0.28}]
chr20	GH20I044467	44467235	44467510	0.89	[{'connected_gene': 'RPL37AP1', 'score': 550.77}, {'connected_gene': 'GC20M044467', 'score': 550.77}, {'connected_gene': 'PKIG', 'score': 10.18}, {'connected_gene': 'HNF4A', 'score': 4.66}, {'connected_gene': 'TTPAL', 'score': 2.51}, {'connected_gene': 'GC20P044473', 'score': 0.44}]
chr20	GH20I044455	44455988	44460572	0.88	[{'connected_gene': 'FITM2', 'score': 10.12}, {'connected_gene': 'ENSG00000132832', 'score': 5.06}, {'connected_gene': 'TTPAL', 'score': 4.97}, {'connected_gene': 'LINC01620', 'score': 0.44}, {'connected_gene': 'LINC01430', 'score': 0.44}, {'connected_gene': 'MIR3646', 'score': 0.23}]
chr20	GH20I044309	44309671	44311830	2.07	[{'connected_gene': 'FITM2', 'score': 550.77}, {'connected_gene': 'IFT52', 'score': 12.84}, {'connected_gene': 'TTPAL', 'score': 4.89}, {'connected_gene': 'GC20M044290', 'score': 0.37}]
chr20	GH20I044530	44530878	44533179	2.26	[{'connected_gene': 'PKIG', 'score': 556.65}, {'connected_gene': 'SYS1', 'score': 9.78}, {'connected_gene': 'TTPAL', 'score': 6.12}, {'connected_gene': 'PIR61280', 'score': 0.17}]
chr20	GH20I044578	44578538	44588463	2.37	[{'connected_gene': 'PKIG', 'score': 555.56}, {'connected_gene': 'TTPAL', 'score': 5.31}, {'connected_gene': 'OSER1', 'score': 1.25}, {'connected_gene': 'PIR61280', 'score': 0.28}, {'connected_gene': 'GC20M044554', 'score': 0.21}]
chr20	GH20I044525	44525604	44526802	0.58	[{'connected_gene': 'PKIG', 'score': 6.32}, {'connected_gene': 'TTPAL', 'score': 5.18}, {'connected_gene': 'SERINC3', 'score': 0.77}]
chr20	GH20I044596	44596833	44602589	1.67	[{'connected_gene': 'PKIG', 'score': 567.72}, {'connected_gene': 'TTPAL', 'score': 5.29}, {'connected_gene': 'PIR61280', 'score': 0.34}, {'connected_gene': 'GC20M044554', 'score': 0.25}]
chr20	GH20I044594	44594160	44595504	1.37	[{'connected_gene': 'PKIG', 'score': 12.39}, {'connected_gene': 'SERINC3', 'score': 11.9}, {'connected_gene': 'ADA', 'score': 10.75}, {'connected_gene': 'LINC01620', 'score': 9.88}, {'connected_gene': 'LINC01430', 'score': 9.88}, {'connected_gene': 'TTPAL', 'score': 4.86}, {'connected_gene': 'PIR61280', 'score': 0.31}, {'connected_gene': 'GC20M044554', 'score': 0.23}]
chr20	GH20I044613	44613697	44617067	1.09	[{'connected_gene': 'PKIG', 'score': 16.79}, {'connected_gene': 'ADA', 'score': 12.09}, {'connected_gene': 'TTPAL', 'score': 5.13}, {'connected_gene': 'PIR61280', 'score': 0.44}, {'connected_gene': 'GC20M044554', 'score': 0.29}]
chr20	GH20I044518	44518965	44523782	2.24	[{'connected_gene': 'SERINC3', 'score': 560.86}, {'connected_gene': 'PKIG', 'score': 6.28}, {'connected_gene': 'TTPAL', 'score': 5.11}, {'connected_gene': 'PIR36658', 'score': 0.34}, {'connected_gene': 'GC20M044500', 'score': 0.34}]
chr20	GH20I044617	44617940	44619515	0.76	[{'connected_gene': 'ADA', 'score': 12.11}, {'connected_gene': 'PKIG', 'score': 11.29}, {'connected_gene': 'TTPAL', 'score': 4.52}, {'connected_gene': 'PIR61280', 'score': 0.77}, {'connected_gene': 'GC20M044554', 'score': 0.31}]
chr20	GH20I044491	44491043	44492929	0.63	[{'connected_gene': 'GC20P044491', 'score': 550.77}, {'connected_gene': 'PIR37618', 'score': 550.77}, {'connected_gene': 'RPL37AP1', 'score': 12.54}, {'connected_gene': 'SERINC3', 'score': 12.04}, {'connected_gene': 'PKIG', 'score': 11.58}, {'connected_gene': 'LINC01620', 'score': 11.15}, {'connected_gene': 'LINC01430', 'score': 11.15}, {'connected_gene': 'TTPAL', 'score': 0.37}, {'connected_gene': 'GC20P044473', 'score': 0.37}]
chr20	GH20I044493	44493549	44498361	1.25	[{'connected_gene': 'GC20P044495', 'score': 550.77}, {'connected_gene': 'PIR46342', 'score': 550.77}, {'connected_gene': 'PKIG', 'score': 17.51}, {'connected_gene': 'TTPAL', 'score': 17.4}, {'connected_gene': 'SERINC3', 'score': 13.18}, {'connected_gene': 'RPL37AP1', 'score': 12.54}, {'connected_gene': 'LINC01620', 'score': 11.14}, {'connected_gene': 'LINC01430', 'score': 11.14}, {'connected_gene': 'OSER1', 'score': 1.56}, {'connected_gene': 'ADA', 'score': 1.48}, {'connected_gene': 'STK4', 'score': 1.22}, {'connected_gene': 'PIR60204', 'score': 0.77}, {'connected_gene': 'GC20P044491', 'score': 0.77}, {'connected_gene': 'GC20P044473', 'score': 0.34}]
chr20	GH20I044489	44489157	44490894	0.83	[{'connected_gene': 'GC20P044491', 'score': 550.77}, {'connected_gene': 'SERINC3', 'score': 7.25}, {'connected_gene': 'PKIG', 'score': 6.15}, {'connected_gene': 'PIR42438', 'score': 0.77}, {'connected_gene': 'TTPAL', 'score': 0.39}, {'connected_gene': 'GC20P044473', 'score': 0.37}]
chr20	GH20I044621	44621132	44622310	0.31	[{'connected_gene': 'PIR61280', 'score': 550.77}, {'connected_gene': 'ADA', 'score': 12.42}, {'connected_gene': 'PKIG', 'score': 10.92}, {'connected_gene': 'TTPAL', 'score': 4.92}, {'connected_gene': 'PIR48727', 'score': 0.77}, {'connected_gene': 'GC20M044554', 'score': 0.31}]
chr20	GH20I044623	44623901	44626796	0.46	[{'connected_gene': 'PIR48727', 'score': 550.77}, {'connected_gene': 'ADA', 'score': 12.44}, {'connected_gene': 'PKIG', 'score': 11.14}, {'connected_gene': 'TTPAL', 'score': 5.11}, {'connected_gene': 'PIR61280', 'score': 0.77}, {'connected_gene': 'GC20M044554', 'score': 0.34}]