PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000306077	[[14166439, 14166705], [14170911, 14171061], [14172321, 14172456], [14173079, 14173174], [14174045, 14174095], [14174365, 14174435], [14175238, 14175309], [14176269, 14176391], [14176657, 14176732], [14177306, 14177408], [14180679, 14180797], [14183092, 14185179]]	[[14166693, 14166705], [14170911, 14171061], [14172321, 14172456], [14173079, 14173174], [14174045, 14174095], [14174365, 14174435], [14175238, 14175309], [14176269, 14176391], [14176657, 14176732], [14177306, 14177408], [14180679, 14180797], [14183092, 14183295]]
ENST00000432444	[[14166514, 14166705], [14170354, 14170585], [14170911, 14171061], [14172321, 14172456], [14173079, 14173174], [14174045, 14174095], [14174365, 14174421]]	[[14166693, 14166705], [14170354, 14170543]]
NM_024334	[[14166439, 14166705], [14170911, 14171061], [14172321, 14172456], [14173079, 14173174], [14174045, 14174095], [14174365, 14174435], [14175238, 14175309], [14176269, 14176391], [14176657, 14176732], [14177306, 14177408], [14180679, 14180797], [14183092, 14185180]]	[[14166693, 14166705], [14170911, 14171061], [14172321, 14172456], [14173079, 14173174], [14174045, 14174095], [14174365, 14174435], [14175238, 14175309], [14176269, 14176391], [14176657, 14176732], [14177306, 14177408], [14180679, 14180797], [14183092, 14183295]]

Promoter

Chrom	Start	End	Description
chr3	14166497	14166541	CAGE_peak_4_at_TMEM43_5end
chr3	14166542	14166566	CAGE_peak_3_at_TMEM43_5end
chr3	14166567	14166598	CAGE_peak_2_at_TMEM43_5end
chr3	14166625	14166649	CAGE_peak_1_at_TMEM43_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I014490	14490127	14490638	0.46	[{'connected_gene': 'GRIP2', 'score': 6.39}, {'connected_gene': 'TMEM43', 'score': 5.83}, {'connected_gene': 'GC03M014530', 'score': 0.26}, {'connected_gene': 'RNU6-905P', 'score': 0.26}, {'connected_gene': 'GC03P014432', 'score': 0.22}]
chr3	GH03I013562	13562607	13566892	0.57	[{'connected_gene': 'TMEM43', 'score': 4.98}, {'connected_gene': 'HDAC11', 'score': 4.75}, {'connected_gene': 'GC03P013574', 'score': 0.44}, {'connected_gene': 'FBLN2', 'score': 0.37}]
chr3	GH03I014169	14169854	14172089	0.98	[{'connected_gene': 'TMEM43', 'score': 11.43}, {'connected_gene': 'CHCHD4', 'score': 11.43}, {'connected_gene': 'XPC', 'score': 8.66}, {'connected_gene': 'LSM3', 'score': 0.44}, {'connected_gene': 'ENSG00000228242', 'score': 0.31}]
chr3	GH03I013528	13528779	13530845	0.65	[{'connected_gene': 'XPC', 'score': 17.93}, {'connected_gene': 'ENSG00000228242', 'score': 15.8}, {'connected_gene': 'TMEM43', 'score': 10.51}, {'connected_gene': 'PIR59377', 'score': 0.44}, {'connected_gene': 'FBLN2', 'score': 0.37}]
chr3	GH03I014438	14438497	14442400	1.68	[{'connected_gene': 'XPC', 'score': 33.35}, {'connected_gene': 'CCDC174', 'score': 30.94}, {'connected_gene': 'CAPN7', 'score': 26.37}, {'connected_gene': 'SLC6A6', 'score': 24.17}, {'connected_gene': 'NR2C2', 'score': 20.77}, {'connected_gene': 'SH3BP5-AS1', 'score': 13.91}, {'connected_gene': 'TMEM43', 'score': 12.85}, {'connected_gene': 'ENSG00000228242', 'score': 12.25}, {'connected_gene': 'GC03P014432', 'score': 0.44}, {'connected_gene': 'GC03M014530', 'score': 0.16}, {'connected_gene': 'RNU6-905P', 'score': 0.16}]
chr3	GH03I014156	14156152	14157854	0.2	[{'connected_gene': 'XPC', 'score': 12.14}, {'connected_gene': 'LSM3', 'score': 12.14}, {'connected_gene': 'TMEM43', 'score': 11.88}, {'connected_gene': 'CHCHD4', 'score': 11.88}, {'connected_gene': 'RBSN', 'score': 4.38}, {'connected_gene': 'ENSG00000228242', 'score': 0.39}]
chr3	GH03I014177	14177306	14180101	2.1	[{'connected_gene': 'XPC', 'score': 582.37}, {'connected_gene': 'LSM3', 'score': 572.82}, {'connected_gene': 'CCDC174', 'score': 32.55}, {'connected_gene': 'CHCHD4', 'score': 21.44}, {'connected_gene': 'ENSG00000228242', 'score': 19.06}, {'connected_gene': 'TMEM43', 'score': 16.95}, {'connected_gene': 'NR2C2', 'score': 14.06}, {'connected_gene': 'MRPS25', 'score': 9.72}]
chr3	GH03I015097	15097647	15100022	2.14	[{'connected_gene': 'RBSN', 'score': 550.77}, {'connected_gene': 'GC03M015143', 'score': 550.77}, {'connected_gene': 'NR2C2', 'score': 66.49}, {'connected_gene': 'CCDC174', 'score': 58.67}, {'connected_gene': 'SH3BP5-AS1', 'score': 50.03}, {'connected_gene': 'CAPN7', 'score': 48.58}, {'connected_gene': 'ENSG00000228242', 'score': 38.11}, {'connected_gene': 'XPC', 'score': 32.56}, {'connected_gene': 'MRPS25', 'score': 12.36}, {'connected_gene': 'HACL1', 'score': 10.72}, {'connected_gene': 'FGD5', 'score': 9.94}, {'connected_gene': 'EAF1-AS1', 'score': 9.88}, {'connected_gene': 'TMEM43', 'score': 9.7}, {'connected_gene': 'FGD5-AS1', 'score': 6.97}]
chr3	GH03I013839	13839143	13840530	0.49	[{'connected_gene': 'CCDC174', 'score': 16.65}, {'connected_gene': 'TMEM43', 'score': 12.53}, {'connected_gene': 'XPC', 'score': 12.29}, {'connected_gene': 'WNT7A', 'score': 11.65}, {'connected_gene': 'FGD5', 'score': 10.48}, {'connected_gene': 'GC03M014472', 'score': 0.39}]
chr3	GH03I014369	14369506	14375864	1.69	[{'connected_gene': 'CCDC174', 'score': 24.04}, {'connected_gene': 'XPC', 'score': 16.58}, {'connected_gene': 'TMEM43', 'score': 14.97}, {'connected_gene': 'ENSG00000228242', 'score': 14.36}, {'connected_gene': 'NR2C2', 'score': 14.3}, {'connected_gene': 'SH3BP5-AS1', 'score': 13.42}, {'connected_gene': 'SLC6A6', 'score': 11.8}, {'connected_gene': 'CAPN7', 'score': 11.54}, {'connected_gene': 'LINC01267', 'score': 7.72}, {'connected_gene': 'WNT7A', 'score': 4.6}, {'connected_gene': 'RNA5SP124', 'score': 0.34}]
chr3	GH03I013890	13890306	13891817	1.25	[{'connected_gene': 'LINC00620', 'score': 11.17}, {'connected_gene': 'TMEM43', 'score': 10.23}, {'connected_gene': 'CHCHD4', 'score': 10.23}, {'connected_gene': 'VN1R20P', 'score': 8.0}, {'connected_gene': 'LOC105376957', 'score': 0.77}, {'connected_gene': 'WNT7A', 'score': 0.39}]
chr3	GH03I013647	13647301	13649180	1.13	[{'connected_gene': 'LINC00620', 'score': 21.25}, {'connected_gene': 'XPC', 'score': 17.93}, {'connected_gene': 'ENSG00000228242', 'score': 15.81}, {'connected_gene': 'TMEM43', 'score': 10.53}, {'connected_gene': 'FBLN2', 'score': 4.92}, {'connected_gene': 'LOC100293612', 'score': 0.44}, {'connected_gene': 'GC03M014469', 'score': 0.28}]
chr3	GH03I014122	14122550	14127923	2.59	[{'connected_gene': 'CHCHD4', 'score': 565.83}, {'connected_gene': 'TMEM43', 'score': 557.46}, {'connected_gene': 'CCDC174', 'score': 31.24}, {'connected_gene': 'XPC', 'score': 30.11}, {'connected_gene': 'NR2C2', 'score': 19.28}, {'connected_gene': 'ENSG00000228242', 'score': 12.56}, {'connected_gene': 'VN1R20P', 'score': 7.49}, {'connected_gene': 'TPRXL', 'score': 6.96}, {'connected_gene': 'ENSG00000268279', 'score': 0.44}]
chr3	GH03I014807	14807246	14808879	0.57	[{'connected_gene': 'SH3BP5-AS1', 'score': 18.78}, {'connected_gene': 'CCDC174', 'score': 18.71}, {'connected_gene': 'XPC', 'score': 17.93}, {'connected_gene': 'ENSG00000228242', 'score': 15.8}, {'connected_gene': 'CAPN7', 'score': 14.27}, {'connected_gene': 'TMEM43', 'score': 10.51}, {'connected_gene': 'NR2C2', 'score': 10.3}, {'connected_gene': 'LINC02011', 'score': 0.77}, {'connected_gene': 'FGD5', 'score': 0.77}, {'connected_gene': 'PIR61652', 'score': 0.31}]
chr3	GH03I014450	14450821	14455775	1.63	[{'connected_gene': 'SH3BP5-AS1', 'score': 30.54}, {'connected_gene': 'CCDC174', 'score': 28.37}, {'connected_gene': 'SLC6A6', 'score': 26.36}, {'connected_gene': 'CAPN7', 'score': 25.99}, {'connected_gene': 'NR2C2', 'score': 25.73}, {'connected_gene': 'ENSG00000228242', 'score': 22.03}, {'connected_gene': 'XPC', 'score': 20.81}, {'connected_gene': 'METTL6', 'score': 10.22}, {'connected_gene': 'FGD5', 'score': 9.93}, {'connected_gene': 'TMEM43', 'score': 9.73}, {'connected_gene': 'GC03P014432', 'score': 0.34}, {'connected_gene': 'GC03M014530', 'score': 0.18}, {'connected_gene': 'RNU6-905P', 'score': 0.18}]
chr3	GH03I014136	14136261	14138394	0.8	[{'connected_gene': 'VN1R20P', 'score': 14.55}, {'connected_gene': 'TMEM43', 'score': 6.4}, {'connected_gene': 'ENSG00000268279', 'score': 0.77}, {'connected_gene': 'ENSG00000228242', 'score': 0.44}]
chr3	GH03I014138	14138601	14140122	0.52	[{'connected_gene': 'VN1R20P', 'score': 14.58}, {'connected_gene': 'ENSG00000228242', 'score': 10.08}, {'connected_gene': 'CCDC174', 'score': 9.66}, {'connected_gene': 'LSM3', 'score': 8.34}, {'connected_gene': 'ENSG00000268279', 'score': 0.77}, {'connected_gene': 'TMEM43', 'score': 0.39}]
chr3	GH03I014839	14837095	14838481	0.89	[{'connected_gene': 'ENSG00000230172', 'score': 10.96}, {'connected_gene': 'C3orf20', 'score': 10.63}, {'connected_gene': 'TMEM43', 'score': 5.13}, {'connected_gene': 'PIR49239', 'score': 0.37}, {'connected_gene': 'FGD5', 'score': 0.31}, {'connected_gene': 'LOC105376963', 'score': 0.18}]
chr3	GH03I014166	14166620	14168549	0.2	[{'connected_gene': 'ENSG00000228242', 'score': 12.53}, {'connected_gene': 'TMEM43', 'score': 11.44}, {'connected_gene': 'CHCHD4', 'score': 11.44}, {'connected_gene': 'XPC', 'score': 6.99}, {'connected_gene': 'LSM3', 'score': 0.39}]
chr3	GH03I014132	14132785	14133950	0.66	[{'connected_gene': 'ENSG00000268279', 'score': 550.77}, {'connected_gene': 'XPC', 'score': 17.57}, {'connected_gene': 'LSM3', 'score': 10.75}, {'connected_gene': 'CHCHD4', 'score': 7.22}, {'connected_gene': 'TPRXL', 'score': 6.88}, {'connected_gene': 'TMEM43', 'score': 0.44}]
chr3	GH03I014140	14140511	14149010	1.36	[{'connected_gene': 'ENSG00000228242', 'score': 550.77}, {'connected_gene': 'XPC', 'score': 19.87}, {'connected_gene': 'VN1R20P', 'score': 14.53}, {'connected_gene': 'LSM3', 'score': 12.32}, {'connected_gene': 'CHCHD4', 'score': 9.02}, {'connected_gene': 'TMEM43', 'score': 5.21}, {'connected_gene': 'RBSN', 'score': 4.44}, {'connected_gene': 'ENSG00000268279', 'score': 0.44}]