PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000377724	[[37800498, 37801402], [37819284, 37819398], [37842085, 37842283], [37854776, 37854979], [37857237, 37857348], [37860044, 37860190], [37861136, 37863322]]	[[37800863, 37801402], [37819284, 37819398], [37842085, 37842283], [37854776, 37854979], [37857237, 37857348], [37860044, 37860190], [37861136, 37861505]]
ENST00000242323	[[37800789, 37801402], [37819284, 37819398], [37842085, 37842283], [37854776, 37854979], [37860044, 37860190], [37861136, 37867663]]	[[37800863, 37801402], [37819284, 37819398], [37842085, 37842283], [37854776, 37854979], [37860044, 37860190], [37861136, 37861505]]
ENST00000461549	[[37819290, 37819398], [37854776, 37854979], [37857237, 37857348], [37860044, 37860438]]	None
ENST00000483167	[[37854815, 37854979], [37860044, 37860190], [37861136, 37863322]]	None
ENST00000478453	[[37858476, 37858517], [37860044, 37860190], [37861136, 37861438]]	None
NM_001286810	[[37800550, 37800644], [37819284, 37819398], [37842085, 37842283], [37854776, 37854979], [37857237, 37857348], [37860044, 37860190], [37861136, 37867666]]	[[37800624, 37800644], [37819284, 37819398], [37842085, 37842283], [37854776, 37854979], [37857237, 37857348], [37860044, 37860190], [37861136, 37861505]]
NM_024345	[[37800782, 37801402], [37819284, 37819398], [37842085, 37842283], [37854776, 37854979], [37857237, 37857348], [37860044, 37860190], [37861136, 37867666]]	[[37800863, 37801402], [37819284, 37819398], [37842085, 37842283], [37854776, 37854979], [37857237, 37857348], [37860044, 37860190], [37861136, 37861505]]

Promoter

Chrom	Start	End	Description
chr9	37800758	37800822	CAGE_peak_1_at_DCAF10_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr9	GH09I037463	37463345	37469184	2.28	[{'connected_gene': 'ZBTB5', 'score': 574.67}, {'connected_gene': 'DCAF10', 'score': 40.25}, {'connected_gene': 'EXOSC3', 'score': 40.2}, {'connected_gene': 'ZCCHC7', 'score': 31.65}, {'connected_gene': 'RPL21P83', 'score': 15.18}, {'connected_gene': 'RNF38', 'score': 12.37}, {'connected_gene': 'TRMT10B', 'score': 12.04}, {'connected_gene': 'GRHPR', 'score': 11.35}, {'connected_gene': 'TMX2P1', 'score': 11.23}, {'connected_gene': 'POLR1E', 'score': 10.12}, {'connected_gene': 'KCTD9P3', 'score': 0.39}]
chr9	GH09I037412	37411344	37411493	0.99	[{'connected_gene': 'ZBTB5', 'score': 23.17}, {'connected_gene': 'EXOSC3', 'score': 18.49}, {'connected_gene': 'DCAF10', 'score': 16.81}, {'connected_gene': 'ZCCHC7', 'score': 16.66}, {'connected_gene': 'GRHPR', 'score': 0.39}, {'connected_gene': 'LINC01627', 'score': 0.37}, {'connected_gene': 'LOC105376035', 'score': 0.25}]
chr9	GH09I037859	37859474	37859546	0.41	[{'connected_gene': 'SLC25A51', 'score': 10.81}, {'connected_gene': 'GC09P037865', 'score': 0.44}, {'connected_gene': 'MRPS10P5', 'score': 0.34}, {'connected_gene': 'DCAF10', 'score': 0.22}, {'connected_gene': 'ENSG00000255872', 'score': 0.08}]
chr9	GH09I036928	36928864	36929013	1.08	[{'connected_gene': 'ZCCHC7', 'score': 17.74}, {'connected_gene': 'EXOSC3', 'score': 12.97}, {'connected_gene': 'HMGB3P24', 'score': 10.64}, {'connected_gene': 'DCAF10', 'score': 10.48}, {'connected_gene': 'MIR4476', 'score': 0.28}, {'connected_gene': 'LOC105376032', 'score': 0.19}, {'connected_gene': 'PAX5', 'score': 0.14}]
chr9	GH09I037692	37692244	37693981	0.63	[{'connected_gene': 'ZCCHC7', 'score': 21.53}, {'connected_gene': 'FRMPD1', 'score': 20.43}, {'connected_gene': 'EXOSC3', 'score': 12.33}, {'connected_gene': 'DCAF10', 'score': 12.31}, {'connected_gene': 'ZBTB5', 'score': 10.73}, {'connected_gene': 'POLR1E', 'score': 10.09}, {'connected_gene': 'RPL21P83', 'score': 6.58}, {'connected_gene': 'GC09M037661', 'score': 0.29}, {'connected_gene': 'RN7SKP171', 'score': 0.29}, {'connected_gene': 'TRMT10B', 'score': 0.21}, {'connected_gene': 'ENSG00000255872', 'score': 0.05}]
chr9	GH09I037119	37119529	37122233	2.3	[{'connected_gene': 'ZCCHC7', 'score': 583.21}, {'connected_gene': 'LOC105376034', 'score': 550.77}, {'connected_gene': 'EXOSC3', 'score': 30.61}, {'connected_gene': 'DCAF10', 'score': 16.79}, {'connected_gene': 'TRMT10B', 'score': 13.12}, {'connected_gene': 'ZBTB5', 'score': 12.77}, {'connected_gene': 'HMGB3P24', 'score': 10.6}, {'connected_gene': 'GC09P037160', 'score': 0.28}]
chr9	GH09I038141	38141406	38142824	0.85	[{'connected_gene': 'DCAF10', 'score': 14.1}, {'connected_gene': 'ZBTB5', 'score': 12.57}, {'connected_gene': 'POLR1E', 'score': 11.47}, {'connected_gene': 'SHB', 'score': 8.01}, {'connected_gene': 'GC09P038148', 'score': 0.44}, {'connected_gene': 'PIR39865', 'score': 0.34}]
chr9	GH09I036991	36991303	36998649	1.31	[{'connected_gene': 'DCAF10', 'score': 14.08}, {'connected_gene': 'ZBTB5', 'score': 12.59}, {'connected_gene': 'POLR1E', 'score': 11.48}, {'connected_gene': 'PAX5', 'score': 11.41}, {'connected_gene': 'ZCCHC7', 'score': 10.92}, {'connected_gene': 'RPL21P83', 'score': 4.94}, {'connected_gene': 'LOC105376032', 'score': 0.44}, {'connected_gene': 'MIR4476', 'score': 0.15}]
chr9	GH09I037798	37798386	37799470	0.46	[{'connected_gene': 'DCAF10', 'score': 550.77}, {'connected_gene': 'LOC105376037', 'score': 550.77}, {'connected_gene': 'SLC25A51', 'score': 9.55}, {'connected_gene': 'EXOSC3', 'score': 0.77}, {'connected_gene': 'ENSG00000255872', 'score': 0.06}]
chr9	GH09I037485	37485062	37488539	2.21	[{'connected_gene': 'POLR1E', 'score': 580.95}, {'connected_gene': 'RPL21P83', 'score': 44.65}, {'connected_gene': 'ZCCHC7', 'score': 27.91}, {'connected_gene': 'EXOSC3', 'score': 23.7}, {'connected_gene': 'ZBTB5', 'score': 16.41}, {'connected_gene': 'FBXO10', 'score': 16.31}, {'connected_gene': 'ENSG00000234160', 'score': 12.54}, {'connected_gene': 'DCAF10', 'score': 11.04}, {'connected_gene': 'TOMM5', 'score': 10.79}, {'connected_gene': 'ENSG00000256966', 'score': 10.79}, {'connected_gene': 'TMX2P1', 'score': 9.83}, {'connected_gene': 'FRMPD1', 'score': 9.74}, {'connected_gene': 'GRHPR', 'score': 8.88}, {'connected_gene': 'GC09M037494', 'score': 0.77}]
chr9	GH09I038175	38175604	38177083	0.69	[{'connected_gene': 'EXOSC3', 'score': 32.79}, {'connected_gene': 'ZBTB5', 'score': 32.09}, {'connected_gene': 'DCAF10', 'score': 30.13}, {'connected_gene': 'TRMT10B', 'score': 25.31}, {'connected_gene': 'ENSG00000200026', 'score': 11.8}, {'connected_gene': 'TMX2P1', 'score': 11.25}, {'connected_gene': 'RPL21P83', 'score': 10.11}, {'connected_gene': 'POLR1E', 'score': 9.69}, {'connected_gene': 'PIR59956', 'score': 0.77}, {'connected_gene': 'PIR60591', 'score': 0.37}]
chr9	GH09I037783	37783831	37786097	2.06	[{'connected_gene': 'EXOSC3', 'score': 561.77}, {'connected_gene': 'PIR35842', 'score': 550.77}, {'connected_gene': 'GC09P037787', 'score': 550.77}, {'connected_gene': 'ZCCHC7', 'score': 11.98}, {'connected_gene': 'DCAF10', 'score': 11.35}, {'connected_gene': 'SLC25A51', 'score': 10.63}, {'connected_gene': 'TMX2P1', 'score': 9.93}, {'connected_gene': 'PIR54823', 'score': 0.77}, {'connected_gene': 'ENSG00000255872', 'score': 0.06}]
chr9	GH09I037799	37799682	37802575	2.14	[{'connected_gene': 'EXOSC3', 'score': 579.34}, {'connected_gene': 'DCAF10', 'score': 561.97}, {'connected_gene': 'TRMT10B', 'score': 34.5}, {'connected_gene': 'ZBTB5', 'score': 30.73}, {'connected_gene': 'ZCCHC7', 'score': 23.66}, {'connected_gene': 'POLR1E', 'score': 20.02}, {'connected_gene': 'SLC25A51', 'score': 13.16}, {'connected_gene': 'TMX2P1', 'score': 11.37}, {'connected_gene': 'RPL21P83', 'score': 10.14}, {'connected_gene': 'ENSG00000255872', 'score': 0.06}]
chr9	GH09I038021	38021752	38029289	1.38	[{'connected_gene': 'EXOSC3', 'score': 27.3}, {'connected_gene': 'SHB', 'score': 19.21}, {'connected_gene': 'TMX2P1', 'score': 18.47}, {'connected_gene': 'DCAF10', 'score': 16.83}, {'connected_gene': 'SLC25A51', 'score': 16.74}, {'connected_gene': 'ZCCHC7', 'score': 16.62}, {'connected_gene': 'ZBTB5', 'score': 12.75}, {'connected_gene': 'ENSG00000255872', 'score': 12.39}, {'connected_gene': 'RNU7-124P', 'score': 11.6}, {'connected_gene': 'GC09M038093', 'score': 0.26}, {'connected_gene': 'GC09P038069', 'score': 0.26}]
chr9	GH09I037026	37026011	37038375	2.26	[{'connected_gene': 'PAX5', 'score': 573.67}, {'connected_gene': 'DCAF10', 'score': 16.92}, {'connected_gene': 'ZCCHC7', 'score': 16.56}, {'connected_gene': 'EXOSC3', 'score': 10.25}, {'connected_gene': 'POLR1E', 'score': 9.8}, {'connected_gene': 'LOC105376032', 'score': 5.76}, {'connected_gene': 'ZBTB5', 'score': 2.01}, {'connected_gene': 'LOC105376031', 'score': 0.77}]
chr9	GH09I037590	37590671	37593213	2.09	[{'connected_gene': 'TOMM5', 'score': 557.21}, {'connected_gene': 'ENSG00000256966', 'score': 550.77}, {'connected_gene': 'ZCCHC7', 'score': 27.9}, {'connected_gene': 'EXOSC3', 'score': 23.72}, {'connected_gene': 'DCAF10', 'score': 11.06}, {'connected_gene': 'TMX2P1', 'score': 9.84}, {'connected_gene': 'POLR1E', 'score': 9.09}, {'connected_gene': 'GC09P037586', 'score': 0.44}, {'connected_gene': 'ENSG00000255872', 'score': 0.04}]
chr9	GH09I037706	37706002	37706962	0.6	[{'connected_gene': 'FRMPD1', 'score': 24.86}, {'connected_gene': 'ZCCHC7', 'score': 13.24}, {'connected_gene': 'ZBTB5', 'score': 12.9}, {'connected_gene': 'DCAF10', 'score': 11.36}, {'connected_gene': 'TMX2P1', 'score': 11.28}, {'connected_gene': 'EXOSC3', 'score': 10.71}, {'connected_gene': 'RPL21P83', 'score': 10.16}, {'connected_gene': 'GC09M037661', 'score': 0.26}, {'connected_gene': 'RN7SKP171', 'score': 0.26}, {'connected_gene': 'TRMT10B', 'score': 0.25}, {'connected_gene': 'ENSG00000255872', 'score': 0.05}]
chr9	GH09I037753	37753184	37754703	1.93	[{'connected_gene': 'TRMT10B', 'score': 565.4}, {'connected_gene': 'TMX2P1', 'score': 24.65}, {'connected_gene': 'SLC25A51', 'score': 13.1}, {'connected_gene': 'ZCCHC7', 'score': 13.02}, {'connected_gene': 'POLR1E', 'score': 11.34}, {'connected_gene': 'DCAF10', 'score': 10.86}, {'connected_gene': 'ZBTB5', 'score': 10.51}, {'connected_gene': 'EXOSC3', 'score': 10.31}, {'connected_gene': 'GC09M037773', 'score': 0.37}, {'connected_gene': 'ENSG00000255872', 'score': 0.06}]
chr9	GH09I038073	38073933	38075274	0.97	[{'connected_gene': 'LOC105376039', 'score': 550.77}, {'connected_gene': 'DCAF10', 'score': 14.11}, {'connected_gene': 'ZBTB5', 'score': 12.57}, {'connected_gene': 'POLR1E', 'score': 11.47}, {'connected_gene': 'ZCCHC7', 'score': 10.82}, {'connected_gene': 'IGFBPL1', 'score': 9.54}, {'connected_gene': 'SHB', 'score': 0.44}]
chr9	GH09I037839	37839615	37841310	0.86	[{'connected_gene': 'TMX2P1', 'score': 22.91}, {'connected_gene': 'SLC25A51', 'score': 19.56}, {'connected_gene': 'MRPS10P5', 'score': 0.77}, {'connected_gene': 'GC09P037865', 'score': 0.34}, {'connected_gene': 'DCAF10', 'score': 0.28}, {'connected_gene': 'ENSG00000255872', 'score': 0.07}]
chr9	GH09I037835	37835933	37836295	0.3	[{'connected_gene': 'ENSG00000232454', 'score': 550.77}, {'connected_gene': 'MRPS10P5', 'score': 550.77}, {'connected_gene': 'SLC25A51', 'score': 10.33}, {'connected_gene': 'DCAF10', 'score': 0.28}, {'connected_gene': 'ENSG00000255872', 'score': 0.07}]
chr9	GH09I037079	37079024	37081308	1.56	[{'connected_gene': 'ENSG00000260100', 'score': 550.77}, {'connected_gene': 'EBLN3P', 'score': 550.77}, {'connected_gene': 'ZCCHC7', 'score': 16.52}, {'connected_gene': 'EXOSC3', 'score': 13.68}, {'connected_gene': 'TRMT10B', 'score': 13.12}, {'connected_gene': 'HMGB3P24', 'score': 11.46}, {'connected_gene': 'DCAF10', 'score': 10.65}, {'connected_gene': 'LOC105376034', 'score': 0.28}]