PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000375599	[[16558194, 16558792], [16559004, 16559141], [16559387, 16559512], [16560106, 16560259], [16563125, 16563657]]	[[16558542, 16558792], [16559004, 16559141], [16559387, 16559512], [16560106, 16560259], [16563125, 16563237]]
ENST00000434014	[[16558775, 16558792], [16559004, 16559141], [16560106, 16560259], [16563125, 16563154]]	[[16558775, 16558792], [16559004, 16559141], [16560106, 16560259], [16563125, 16563154]]

Promoter

Chrom	Start	End	Description
chr1	16563641	16563709	CAGE_peak_1_at_RSG1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I016299	16299993	16300962	0.38	[{'connected_gene': 'RSG1', 'score': 10.99}, {'connected_gene': 'SPATA21', 'score': 10.87}, {'connected_gene': 'NECAP2', 'score': 10.86}, {'connected_gene': 'FAM131C', 'score': 10.56}, {'connected_gene': 'GC01P016328', 'score': 0.31}, {'connected_gene': 'PIR62474', 'score': 0.25}, {'connected_gene': 'FBXO42', 'score': 0.23}]
chr1	GH01I016206	16205106	16205255	0.77	[{'connected_gene': 'RSG1', 'score': 11.78}, {'connected_gene': 'FAM131C', 'score': 11.13}, {'connected_gene': 'ENSG00000224621', 'score': 11.12}, {'connected_gene': 'GC01P016210', 'score': 0.44}, {'connected_gene': 'ARHGEF19', 'score': 0.44}, {'connected_gene': 'ARHGEF19-AS1', 'score': 0.44}]
chr1	GH01I016236	16236005	16238329	2.23	[{'connected_gene': 'RSG1', 'score': 570.56}, {'connected_gene': 'ARHGEF19', 'score': 31.68}, {'connected_gene': 'NECAP2', 'score': 15.03}, {'connected_gene': 'ARHGEF19-AS1', 'score': 11.65}, {'connected_gene': 'FAM131C', 'score': 11.28}, {'connected_gene': 'ZBTB17', 'score': 10.03}, {'connected_gene': 'LINC01783', 'score': 5.74}, {'connected_gene': 'GC01M016230', 'score': 0.77}]
chr1	GH01I016293	16293402	16294200	0.31	[{'connected_gene': 'RSG1', 'score': 15.49}, {'connected_gene': 'ARHGEF19', 'score': 12.79}, {'connected_gene': 'FAM131C', 'score': 10.58}, {'connected_gene': 'GC01P016328', 'score': 0.29}, {'connected_gene': 'PIR62474', 'score': 0.28}, {'connected_gene': 'FBXO42', 'score': 0.22}]
chr1	GH01I016186	16186354	16187284	0.46	[{'connected_gene': 'RSG1', 'score': 11.67}, {'connected_gene': 'ARHGEF19', 'score': 11.3}, {'connected_gene': 'ARHGEF19-AS1', 'score': 0.39}, {'connected_gene': 'GC01P016173', 'score': 0.39}]
chr1	GH01I016364	16364442	16365599	0.89	[{'connected_gene': 'RSG1', 'score': 15.69}, {'connected_gene': 'ANO7L1', 'score': 9.72}, {'connected_gene': 'ARHGEF19', 'score': 9.6}, {'connected_gene': 'RPL22P3', 'score': 0.77}, {'connected_gene': 'SZRD1', 'score': 0.39}]
chr1	GH01I016189	16189748	16190120	0.49	[{'connected_gene': 'RSG1', 'score': 13.82}, {'connected_gene': 'ARHGEF19-AS1', 'score': 0.44}, {'connected_gene': 'GC01P016173', 'score': 0.37}]
chr1	GH01I016366	16366488	16369476	1.81	[{'connected_gene': 'RPL22P3', 'score': 550.77}, {'connected_gene': 'RSG1', 'score': 25.53}, {'connected_gene': 'ARHGEF19', 'score': 17.83}, {'connected_gene': 'FBXO42', 'score': 7.36}, {'connected_gene': 'SZRD1', 'score': 0.37}]
chr1	GH01I016121	16121736	16124229	1.18	[{'connected_gene': 'RPL22P3', 'score': 23.69}, {'connected_gene': 'SPEN', 'score': 21.83}, {'connected_gene': 'MFAP2', 'score': 20.36}, {'connected_gene': 'FBXO42', 'score': 18.06}, {'connected_gene': 'ZBTB17', 'score': 15.25}, {'connected_gene': 'EIF1AXP1', 'score': 12.91}, {'connected_gene': 'CROCCP3', 'score': 12.19}, {'connected_gene': 'ENSG00000224621', 'score': 12.08}, {'connected_gene': 'FAM131C', 'score': 11.55}, {'connected_gene': 'NECAP2', 'score': 11.25}, {'connected_gene': 'ARHGEF19-AS1', 'score': 11.25}, {'connected_gene': 'CROCC', 'score': 10.93}, {'connected_gene': 'NBPF1', 'score': 10.76}, {'connected_gene': 'ENSG00000226526', 'score': 10.24}, {'connected_gene': 'LINC01772', 'score': 10.21}, {'connected_gene': 'CLCNKB', 'score': 5.21}, {'connected_gene': 'ESPNP', 'score': 4.85}, {'connected_gene': 'RSG1', 'score': 4.28}, {'connected_gene': 'GC01P016103', 'score': 0.37}, {'connected_gene': 'LOC101927479', 'score': 0.29}]
chr1	GH01I016109	16109361	16110461	0.38	[{'connected_gene': 'FAM131C', 'score': 12.0}, {'connected_gene': 'ARHGEF19-AS1', 'score': 11.41}, {'connected_gene': 'ENSG00000224621', 'score': 11.13}, {'connected_gene': 'RSG1', 'score': 10.89}, {'connected_gene': 'GC01P016103', 'score': 0.44}, {'connected_gene': 'LOC101927479', 'score': 0.25}]
chr1	GH01I016066	16066425	16068921	0.81	[{'connected_gene': 'HSPB7', 'score': 12.05}, {'connected_gene': 'CLCNKA', 'score': 12.05}, {'connected_gene': 'ENSG00000233078', 'score': 12.01}, {'connected_gene': 'FAM131C', 'score': 11.98}, {'connected_gene': 'ARHGEF19-AS1', 'score': 11.81}, {'connected_gene': 'ENSG00000224621', 'score': 11.42}, {'connected_gene': 'RSG1', 'score': 11.09}, {'connected_gene': 'FBLIM1', 'score': 10.33}, {'connected_gene': 'CLCNKB', 'score': 0.34}]
chr1	GH01I016373	16373647	16377399	1.14	[{'connected_gene': 'ARHGEF19', 'score': 18.77}, {'connected_gene': 'RSG1', 'score': 9.44}, {'connected_gene': 'CROCC', 'score': 4.96}, {'connected_gene': 'RPL22P3', 'score': 0.44}, {'connected_gene': 'GC01P016389', 'score': 0.39}, {'connected_gene': 'SZRD1', 'score': 0.34}]
chr1	GH01I016187	16187346	16189603	1.35	[{'connected_gene': 'ARHGEF19', 'score': 20.52}, {'connected_gene': 'RSG1', 'score': 13.86}, {'connected_gene': 'TRE-TTC3-1', 'score': 5.59}, {'connected_gene': 'ARHGEF19-AS1', 'score': 0.44}, {'connected_gene': 'GC01P016173', 'score': 0.37}]
chr1	GH01I016195	16195055	16195958	0.77	[{'connected_gene': 'ARHGEF19', 'score': 41.79}, {'connected_gene': 'RSG1', 'score': 14.37}, {'connected_gene': 'SPEN', 'score': 13.73}, {'connected_gene': 'CROCC', 'score': 11.38}, {'connected_gene': 'RPL22P3', 'score': 11.29}, {'connected_gene': 'ENSG00000237938', 'score': 10.26}, {'connected_gene': 'MFAP2', 'score': 9.89}, {'connected_gene': 'ARHGEF19-AS1', 'score': 0.77}, {'connected_gene': 'GC01P016173', 'score': 0.34}]
chr1	GH01I016205	16205314	16209044	1.74	[{'connected_gene': 'ARHGEF19', 'score': 65.41}, {'connected_gene': 'RSG1', 'score': 25.81}, {'connected_gene': 'NBPF1', 'score': 12.08}, {'connected_gene': 'FAM131C', 'score': 11.13}, {'connected_gene': 'ENSG00000224621', 'score': 11.12}, {'connected_gene': 'SZRD1', 'score': 10.76}, {'connected_gene': 'CROCC', 'score': 10.74}, {'connected_gene': 'MFAP2', 'score': 9.93}, {'connected_gene': 'GC01P016210', 'score': 0.77}, {'connected_gene': 'ARHGEF19-AS1', 'score': 0.44}]
chr1	GH01I016402	16402545	16403558	0.2	[{'connected_gene': 'ARHGEF19', 'score': 18.94}, {'connected_gene': 'RSG1', 'score': 14.65}, {'connected_gene': 'SPATA21', 'score': 11.77}, {'connected_gene': 'NECAP2', 'score': 11.75}, {'connected_gene': 'PIR56124', 'score': 0.44}]
chr1	GH01I016211	16211601	16213381	1.61	[{'connected_gene': 'ARHGEF19', 'score': 586.44}, {'connected_gene': 'GC01P016210', 'score': 550.77}, {'connected_gene': 'RSG1', 'score': 11.83}, {'connected_gene': 'FAM131C', 'score': 11.13}, {'connected_gene': 'ENSG00000224621', 'score': 11.1}]
chr1	GH01I016191	16191348	16192567	0.46	[{'connected_gene': 'ARHGEF19', 'score': 19.45}, {'connected_gene': 'RSG1', 'score': 13.92}, {'connected_gene': 'ARHGEF19-AS1', 'score': 0.44}, {'connected_gene': 'GC01P016173', 'score': 0.37}]
chr1	GH01I016370	16370994	16373241	1.09	[{'connected_gene': 'ARHGEF19', 'score': 18.84}, {'connected_gene': 'RSG1', 'score': 10.36}, {'connected_gene': 'LINC01783', 'score': 5.32}, {'connected_gene': 'RPL22P3', 'score': 0.77}, {'connected_gene': 'SZRD1', 'score': 0.37}, {'connected_gene': 'GC01P016389', 'score': 0.37}]
chr1	GH01I016171	16171446	16185389	1.76	[{'connected_gene': 'ARHGEF19', 'score': 25.27}, {'connected_gene': 'TRE-TTC3-1', 'score': 16.28}, {'connected_gene': 'NECAP2', 'score': 15.02}, {'connected_gene': 'EPHA2', 'score': 14.06}, {'connected_gene': 'FAM131C', 'score': 12.35}, {'connected_gene': 'CROCCP3', 'score': 10.38}, {'connected_gene': 'LINC01772', 'score': 10.1}, {'connected_gene': 'ZBTB17', 'score': 10.04}, {'connected_gene': 'ENSG00000237301', 'score': 9.95}, {'connected_gene': 'RSG1', 'score': 9.84}, {'connected_gene': 'NBPF1', 'score': 9.77}, {'connected_gene': 'LINC01783', 'score': 5.34}, {'connected_gene': 'FBLIM1', 'score': 4.1}, {'connected_gene': 'SRARP', 'score': 1.94}, {'connected_gene': 'SPEN', 'score': 1.29}, {'connected_gene': 'GC01P016173', 'score': 0.44}, {'connected_gene': 'ARHGEF19-AS1', 'score': 0.37}]
chr1	GH01I016198	16198941	16199837	0.62	[{'connected_gene': 'ARHGEF19-AS1', 'score': 550.77}, {'connected_gene': 'ARHGEF19', 'score': 25.23}, {'connected_gene': 'RSG1', 'score': 13.52}, {'connected_gene': 'GC01P016210', 'score': 0.39}]
chr1	GH01I016902	16902591	16907508	2.21	[{'connected_gene': 'ENSG00000272426', 'score': 550.77}, {'connected_gene': 'CROCC', 'score': 47.99}, {'connected_gene': 'ZBTB17', 'score': 47.69}, {'connected_gene': 'CROCCP3', 'score': 47.57}, {'connected_gene': 'LINC01772', 'score': 32.77}, {'connected_gene': 'RPL22P3', 'score': 29.75}, {'connected_gene': 'ARHGEF19', 'score': 29.11}, {'connected_gene': 'MFAP2', 'score': 28.49}, {'connected_gene': 'NBPF1', 'score': 27.17}, {'connected_gene': 'NECAP2', 'score': 23.67}, {'connected_gene': 'SZRD1', 'score': 20.77}, {'connected_gene': 'EIF1AXP1', 'score': 16.68}, {'connected_gene': 'ENSG00000226526', 'score': 11.59}, {'connected_gene': 'TRE-TTC3-1', 'score': 11.3}, {'connected_gene': 'FBXO42', 'score': 10.66}, {'connected_gene': 'RSG1', 'score': 10.51}, {'connected_gene': 'ENSG00000224621', 'score': 10.13}, {'connected_gene': 'RCC2', 'score': 9.98}, {'connected_gene': 'LOC105376805', 'score': 8.72}, {'connected_gene': 'ENSG00000235241', 'score': 7.77}, {'connected_gene': 'FAM131C', 'score': 4.28}, {'connected_gene': 'PADI2', 'score': 1.45}, {'connected_gene': 'PADI4', 'score': 1.16}, {'connected_gene': 'GC01M016886', 'score': 0.34}]
chr1	GH01I016209	16209601	16210200	0.74	[{'connected_gene': 'GC01P016210', 'score': 550.77}, {'connected_gene': 'RSG1', 'score': 25.92}, {'connected_gene': 'ENSG00000237938', 'score': 18.24}, {'connected_gene': 'SPEN', 'score': 12.69}, {'connected_gene': 'ZBTB17', 'score': 12.25}, {'connected_gene': 'RPS16P1', 'score': 11.48}, {'connected_gene': 'FAM131C', 'score': 11.13}, {'connected_gene': 'ENSG00000224621', 'score': 11.1}, {'connected_gene': 'ARHGEF19', 'score': 10.78}, {'connected_gene': 'FBXO42', 'score': 9.94}, {'connected_gene': 'ARHGEF19-AS1', 'score': 0.39}]
chr1	GH01I016125	16125473	16129873	0.74	[{'connected_gene': 'ENSG00000224621', 'score': 12.69}, {'connected_gene': 'FAM131C', 'score': 11.84}, {'connected_gene': 'ARHGEF19-AS1', 'score': 11.38}, {'connected_gene': 'ARHGEF19', 'score': 10.47}, {'connected_gene': 'CLCNKB', 'score': 5.71}, {'connected_gene': 'RSG1', 'score': 5.17}, {'connected_gene': 'LOC105376805', 'score': 4.58}, {'connected_gene': 'GC01P016103', 'score': 0.34}, {'connected_gene': 'LOC101927479', 'score': 0.31}, {'connected_gene': 'EPHA2', 'score': 0.31}]
chr1	GH01I016247	16247059	16250599	1.43	[{'connected_gene': 'PIR51330', 'score': 550.77}, {'connected_gene': 'ARHGEF19', 'score': 30.15}, {'connected_gene': 'CROCC', 'score': 29.93}, {'connected_gene': 'SPEN', 'score': 22.71}, {'connected_gene': 'RSG1', 'score': 15.19}, {'connected_gene': 'FBXO42', 'score': 11.38}, {'connected_gene': 'SZRD1', 'score': 11.38}, {'connected_gene': 'ARHGEF19-AS1', 'score': 11.37}, {'connected_gene': 'RPL22P3', 'score': 11.32}, {'connected_gene': 'CROCCP2', 'score': 10.55}, {'connected_gene': 'ENSG00000237938', 'score': 10.24}, {'connected_gene': 'EIF1AXP1', 'score': 9.94}, {'connected_gene': 'MFAP2', 'score': 9.89}, {'connected_gene': 'MT1XP1', 'score': 5.28}, {'connected_gene': 'GC01M016252', 'score': 0.77}, {'connected_gene': 'PIR57319', 'score': 0.77}]
chr1	GH01I016210	16210225	16210284	0.81	[{'connected_gene': 'GC01P016210', 'score': 550.77}, {'connected_gene': 'ARHGEF19', 'score': 550.77}, {'connected_gene': 'RSG1', 'score': 11.8}, {'connected_gene': 'FAM131C', 'score': 11.13}, {'connected_gene': 'ENSG00000224621', 'score': 11.1}, {'connected_gene': 'ARHGEF19-AS1', 'score': 0.39}]
chr1	GH01I016227	16227967	16233681	0.78	[{'connected_gene': 'GC01M016230', 'score': 550.77}, {'connected_gene': 'ARHGEF19', 'score': 20.21}, {'connected_gene': 'RSG1', 'score': 19.64}, {'connected_gene': 'ANO7L1', 'score': 17.56}, {'connected_gene': 'SZRD1', 'score': 10.77}, {'connected_gene': 'MFAP2', 'score': 9.93}, {'connected_gene': 'FBXO42', 'score': 8.3}, {'connected_gene': 'LINC01783', 'score': 5.29}]
chr1	GH01I016395	16395955	16397426	0.63	[{'connected_gene': 'PIR56124', 'score': 550.77}, {'connected_gene': 'ARHGEF19', 'score': 18.96}, {'connected_gene': 'SPATA21', 'score': 11.6}, {'connected_gene': 'NECAP2', 'score': 11.6}, {'connected_gene': 'ARHGEF19-AS1', 'score': 9.74}, {'connected_gene': 'RSG1', 'score': 8.52}, {'connected_gene': 'LINC01783', 'score': 4.82}, {'connected_gene': 'GC01P016389', 'score': 0.44}, {'connected_gene': 'SZRD1', 'score': 0.26}]