PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000514463	[[126156443, 126157304], [126158474, 126162252]]	None
ENST00000389709	[[126156443, 126157304], [126158474, 126158570], [126160607, 126160789], [126178495, 126178580], [126180377, 126181063], [126184997, 126185168], [126189737, 126189868], [126190815, 126190894], [126190995, 126191148], [126193801, 126194762]]	[[126157217, 126157304], [126158474, 126158570], [126160607, 126160789], [126178495, 126178580], [126180377, 126181063], [126184997, 126185168], [126189737, 126189868], [126190815, 126190894], [126190995, 126191148], [126193801, 126194708]]
ENST00000515545	[[126156461, 126157304], [126158474, 126158570], [126160607, 126160789], [126180112, 126181063], [126184997, 126185168], [126189737, 126189868], [126190815, 126190894], [126190995, 126191148], [126193801, 126193830]]	[[126180371, 126181063], [126184997, 126185168], [126189737, 126189868], [126190815, 126190894], [126190995, 126191148], [126193801, 126193830]]
ENST00000336332	[[126179925, 126181063], [126184997, 126185168], [126189737, 126189868], [126190815, 126190894], [126190995, 126191148], [126193801, 126194708]]	[[126180371, 126181063], [126184997, 126185168], [126189737, 126189868], [126190815, 126190894], [126190995, 126191148], [126193801, 126194708]]
NR_104249	[[126156443, 126157304], [126158474, 126158570], [126160607, 126160789], [126180112, 126181063], [126184997, 126185168], [126189737, 126189868], [126190815, 126190894], [126190995, 126191148], [126193801, 126194762]]	None
NM_025112	[[126156443, 126157304], [126158474, 126158570], [126160607, 126160789], [126178495, 126178580], [126180377, 126181063], [126184997, 126185168], [126189737, 126189868], [126190815, 126190894], [126190995, 126191148], [126193801, 126194762]]	[[126157217, 126157304], [126158474, 126158570], [126160607, 126160789], [126178495, 126178580], [126180377, 126181063], [126184997, 126185168], [126189737, 126189868], [126190815, 126190894], [126190995, 126191148], [126193801, 126194708]]
NM_001040653	[[126177743, 126181063], [126184997, 126185168], [126189737, 126189868], [126190815, 126190894], [126190995, 126191148], [126193801, 126194762]]	[[126180371, 126181063], [126184997, 126185168], [126189737, 126189868], [126190815, 126190894], [126190995, 126191148], [126193801, 126194708]]

Promoter

Chrom	Start	End	Description
chr3	126191157	126191171	CAGE_peak_4_at_ZXDC_5end
chr3	126191239	126191272	CAGE_peak_11_at_ZXDC_5end
chr3	126194707	126194798	CAGE_peak_1_at_ZXDC_5end
chr3	126194815	126194848	CAGE_peak_2_at_ZXDC_5end
chr3	126194866	126194887	CAGE_peak_3_at_ZXDC_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I126471	126471860	126477444	2.25	[{'connected_gene': 'ZXDC', 'score': 569.2}, {'connected_gene': 'OR7E29P', 'score': 4.66}, {'connected_gene': 'PIR31332', 'score': 0.39}]
chr3	GH03I126493	126493980	126495149	0.31	[{'connected_gene': 'ZXDC', 'score': 10.52}, {'connected_gene': 'CHST13', 'score': 5.37}, {'connected_gene': 'UROC1', 'score': 0.34}]
chr3	GH03I126547	126547857	126548033	0.54	[{'connected_gene': 'ZXDC', 'score': 1.51}, {'connected_gene': 'C3orf22', 'score': 0.39}, {'connected_gene': 'CHST13', 'score': 0.34}]
chr3	GH03I126481	126481938	126482087	0.64	[{'connected_gene': 'ZXDC', 'score': 0.44}, {'connected_gene': 'UROC1', 'score': 0.28}]
chr3	GH03I126486	126486802	126487972	0.8	[{'connected_gene': 'ZXDC', 'score': 14.68}, {'connected_gene': 'UROC1', 'score': 0.29}]
chr3	GH03I125512	125512137	125512426	0.84	[{'connected_gene': 'ZXDC', 'score': 12.81}, {'connected_gene': 'LOC101927056', 'score': 12.65}, {'connected_gene': 'ZNF148', 'score': 12.15}, {'connected_gene': 'UMPS', 'score': 10.95}, {'connected_gene': 'ENSG00000248787', 'score': 10.14}, {'connected_gene': 'GC03P125517', 'score': 0.77}, {'connected_gene': 'SNX4', 'score': 0.44}, {'connected_gene': 'GC03P125445', 'score': 0.2}]
chr3	GH03I126464	126464217	126467000	1.22	[{'connected_gene': 'ZXDC', 'score': 21.7}, {'connected_gene': 'PIR31332', 'score': 0.77}]
chr3	GH03I126467	126467178	126468957	1.15	[{'connected_gene': 'ZXDC', 'score': 18.38}, {'connected_gene': 'PIR31332', 'score': 0.44}]
chr3	GH03I125645	125645859	125648839	0.84	[{'connected_gene': 'ZNF148', 'score': 61.59}, {'connected_gene': 'ZXDC', 'score': 40.86}, {'connected_gene': 'UMPS', 'score': 37.98}, {'connected_gene': 'OR7E29P', 'score': 22.56}, {'connected_gene': 'ENSG00000242001', 'score': 20.9}, {'connected_gene': 'FAM86JP', 'score': 19.62}, {'connected_gene': 'LOC101927056', 'score': 18.57}, {'connected_gene': 'LOC100419878', 'score': 11.48}, {'connected_gene': 'SLC41A3', 'score': 11.13}, {'connected_gene': 'ENSG00000243072', 'score': 0.29}, {'connected_gene': 'PIR57986', 'score': 0.28}]
chr3	GH03I126907	126907699	126913169	1.71	[{'connected_gene': 'PLXNA1', 'score': 6.77}, {'connected_gene': 'TXNRD3', 'score': 4.74}, {'connected_gene': 'ZXDC', 'score': 1.36}, {'connected_gene': 'PIR53209', 'score': 0.39}, {'connected_gene': 'GC03M126808', 'score': 0.15}, {'connected_gene': 'GC03P126709', 'score': 0.08}, {'connected_gene': 'CHCHD6', 'score': 0.08}]
chr3	GH03I126539	126539443	126543259	1.43	[{'connected_gene': 'CHST13', 'score': 32.75}, {'connected_gene': 'ZXDC', 'score': 2.75}, {'connected_gene': 'C3orf22', 'score': 0.37}]
chr3	GH03I126522	126522840	126531392	2.62	[{'connected_gene': 'CHST13', 'score': 609.65}, {'connected_gene': 'TXNRD3NB', 'score': 11.52}, {'connected_gene': 'TXNRD3', 'score': 11.48}, {'connected_gene': 'NUP210P1', 'score': 10.9}, {'connected_gene': 'OR7E29P', 'score': 5.22}, {'connected_gene': 'C3orf22', 'score': 4.5}, {'connected_gene': 'ZXDC', 'score': 1.83}, {'connected_gene': 'UROC1', 'score': 1.75}]
chr3	GH03I126442	126442198	126442347	0.2	[{'connected_gene': 'LOC105374089', 'score': 0.44}, {'connected_gene': 'GC03M126451', 'score': 0.39}, {'connected_gene': 'ZXDC', 'score': 0.29}]
chr3	GH03I126212	126212451	126214000	1.01	[{'connected_gene': 'LOC105374086', 'score': 550.77}, {'connected_gene': 'ZXDC', 'score': 24.44}, {'connected_gene': 'ZNF148', 'score': 19.79}, {'connected_gene': 'ALDH1L1', 'score': 4.93}, {'connected_gene': 'ALG1L', 'score': 4.48}, {'connected_gene': 'GC03P126153', 'score': 0.21}]
chr3	GH03I125914	125914310	125919032	1.48	[{'connected_gene': 'FAM86JP', 'score': 598.99}, {'connected_gene': 'LOC101927056', 'score': 585.01}, {'connected_gene': 'LOC102723696', 'score': 550.77}, {'connected_gene': 'ZNF148', 'score': 11.1}, {'connected_gene': 'ZXDC', 'score': 10.49}, {'connected_gene': 'ALG1L', 'score': 0.28}]
chr3	GH03I126459	126459738	126460947	0.2	[{'connected_gene': 'PIR31332', 'score': 550.77}, {'connected_gene': 'ZXDC', 'score': 18.01}, {'connected_gene': 'UROC1', 'score': 11.26}, {'connected_gene': 'CHST13', 'score': 11.24}, {'connected_gene': 'GC03M126451', 'score': 0.44}]
chr3	GH03I126461	126461004	126463317	0.2	[{'connected_gene': 'PIR31332', 'score': 550.77}, {'connected_gene': 'ZXDC', 'score': 21.7}, {'connected_gene': 'UROC1', 'score': 11.26}, {'connected_gene': 'CHST13', 'score': 11.24}]
chr3	GH03I126463	126463658	126463807	0.2	[{'connected_gene': 'PIR31332', 'score': 0.77}, {'connected_gene': 'ZXDC', 'score': 0.39}]
chr3	GH03I126971	126971362	126972627	0.91	[{'connected_gene': 'ENSG00000280053', 'score': 550.77}, {'connected_gene': 'PLXNA1', 'score': 14.36}, {'connected_gene': 'CHST13', 'score': 2.61}, {'connected_gene': 'ZXDC', 'score': 1.19}, {'connected_gene': 'PIR43717', 'score': 0.39}, {'connected_gene': 'GC03P126709', 'score': 0.07}]
chr3	GH03I125989	125989801	125991600	1.42	[{'connected_gene': 'PIR42058', 'score': 550.77}, {'connected_gene': 'ALG1L', 'score': 43.66}, {'connected_gene': 'FAM86JP', 'score': 34.15}, {'connected_gene': 'ROPN1B', 'score': 15.45}, {'connected_gene': 'SLC41A3', 'score': 7.84}, {'connected_gene': 'CFAP100', 'score': 2.28}, {'connected_gene': 'ZXDC', 'score': 1.74}, {'connected_gene': 'ENSG00000248607', 'score': 0.2}]
chr3	GH03I126447	126447578	126447727	0.2	[{'connected_gene': 'GC03M126451', 'score': 0.44}, {'connected_gene': 'LOC105374089', 'score': 0.39}, {'connected_gene': 'ZXDC', 'score': 0.31}]