PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000367435	[[193091146, 193091461], [193094241, 193094347], [193099303, 193099373], [193104520, 193104583], [193104666, 193104719], [193107214, 193107303], [193110979, 193111196], [193116996, 193117095], [193119433, 193119512], [193121509, 193121574], [193172924, 193172982], [193181194, 193181230], [193181519, 193181607], [193202122, 193202284], [193205385, 193205486], [193218859, 193219001], [193219805, 193223031]]	[[193091330, 193091461], [193094241, 193094347], [193099303, 193099373], [193104520, 193104583], [193104666, 193104719], [193107214, 193107303], [193110979, 193111196], [193116996, 193117095], [193119433, 193119512], [193121509, 193121574], [193172924, 193172982], [193181194, 193181230], [193181519, 193181607], [193202122, 193202284], [193205385, 193205486], [193218859, 193219001], [193219805, 193219842]]
ENST00000482484	[[193091599, 193091691], [193094241, 193094347], [193096977, 193097268], [193099303, 193099373], [193104520, 193104583], [193104666, 193104719], [193107214, 193107303]]	None
ENST00000477868	[[193202155, 193202284], [193218859, 193219001], [193219805, 193220298]]	None
NM_024529	[[193091087, 193091461], [193094241, 193094347], [193099303, 193099373], [193104520, 193104583], [193104666, 193104719], [193107214, 193107303], [193110979, 193111196], [193116996, 193117095], [193119433, 193119512], [193121509, 193121574], [193172924, 193172982], [193181194, 193181230], [193181519, 193181607], [193202122, 193202284], [193205385, 193205486], [193218859, 193219001], [193219805, 193223945]]	[[193091330, 193091461], [193094241, 193094347], [193099303, 193099373], [193104520, 193104583], [193104666, 193104719], [193107214, 193107303], [193110979, 193111196], [193116996, 193117095], [193119433, 193119512], [193121509, 193121574], [193172924, 193172982], [193181194, 193181230], [193181519, 193181607], [193202122, 193202284], [193205385, 193205486], [193218859, 193219001], [193219805, 193219842]]

Promoter

Chrom	Start	End	Description
chr1	193090923	193090934	CAGE_peak_8_at_CDC73_5end
chr1	193090961	193090970	CAGE_peak_6_at_CDC73_5end
chr1	193091080	193091222	CAGE_peak_1_at_CDC73_5end
chr1	193091236	193091275	CAGE_peak_2_at_CDC73_5end
chr1	193091281	193091306	CAGE_peak_3_at_CDC73_5end
chr1	193091590	193091600	CAGE_peak_5_at_CDC73_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I193109	193109897	193116680	1.22	[{'connected_gene': 'B3GALT2', 'score': 9.59}, {'connected_gene': 'CDC73', 'score': 0.44}, {'connected_gene': 'GLRX2', 'score': 0.44}]
chr1	GH01I193183	193183131	193190482	1.97	[{'connected_gene': 'B3GALT2', 'score': 560.54}, {'connected_gene': 'CDC73', 'score': 10.72}, {'connected_gene': 'MIR1278', 'score': 10.57}, {'connected_gene': 'UCHL5', 'score': 4.22}, {'connected_gene': 'ENSG00000276735', 'score': 0.23}]
chr1	GH01I193210	193210097	193213078	1.05	[{'connected_gene': 'B3GALT2', 'score': 0.34}, {'connected_gene': 'ENSG00000276735', 'score': 0.31}, {'connected_gene': 'CDC73', 'score': 0.17}]
chr1	GH01I193120	193120570	193124089	2.36	[{'connected_gene': 'CDC73', 'score': 550.77}, {'connected_gene': 'B3GALT2', 'score': 9.54}, {'connected_gene': 'LOC101929160', 'score': 0.44}]
chr1	GH01I193069	193069848	193071628	0.98	[{'connected_gene': 'CDC73', 'score': 11.58}, {'connected_gene': 'GLRX2', 'score': 11.47}, {'connected_gene': 'MIR1278', 'score': 10.4}, {'connected_gene': 'UCHL5', 'score': 0.39}, {'connected_gene': 'TROVE2', 'score': 0.39}, {'connected_gene': 'ENSG00000272579', 'score': 0.34}]
chr1	GH01I193067	193067425	193068913	0.82	[{'connected_gene': 'CDC73', 'score': 11.19}, {'connected_gene': 'MIR1278', 'score': 10.59}, {'connected_gene': 'B3GALT2', 'score': 7.31}, {'connected_gene': 'UCHL5', 'score': 5.24}, {'connected_gene': 'TROVE2', 'score': 0.44}, {'connected_gene': 'ENSG00000272579', 'score': 0.34}]
chr1	GH01I192984	192984173	192984484	0.5	[{'connected_gene': 'RGS2', 'score': 24.56}, {'connected_gene': 'CDC73', 'score': 7.98}, {'connected_gene': 'TROVE2', 'score': 1.85}, {'connected_gene': 'ZNF101P2', 'score': 0.39}, {'connected_gene': 'GC01P192950', 'score': 0.29}]
chr1	GH01I192813	192813903	192813960	0.22	[{'connected_gene': 'RGS2', 'score': 23.96}, {'connected_gene': 'CDC73', 'score': 6.86}, {'connected_gene': 'TROVE2', 'score': 1.68}, {'connected_gene': 'LOC105371668', 'score': 0.37}]
chr1	GH01I192814	192814833	192815189	0.46	[{'connected_gene': 'RGS2', 'score': 22.88}, {'connected_gene': 'CDC73', 'score': 6.92}, {'connected_gene': 'TROVE2', 'score': 1.59}, {'connected_gene': 'LOC105371668', 'score': 0.37}]
chr1	GH01I192805	192805951	192811795	2.52	[{'connected_gene': 'RGS2', 'score': 567.86}, {'connected_gene': 'ENSG00000231767', 'score': 10.08}, {'connected_gene': 'CDC73', 'score': 8.09}, {'connected_gene': 'RGS1', 'score': 5.3}, {'connected_gene': 'TROVE2', 'score': 2.28}, {'connected_gene': 'LOC100130137', 'score': 0.44}]
chr1	GH01I192877	192877401	192879687	0.98	[{'connected_gene': 'RGS2', 'score': 37.34}, {'connected_gene': 'RGS1', 'score': 10.11}, {'connected_gene': 'CDC73', 'score': 8.13}, {'connected_gene': 'TROVE2', 'score': 1.71}, {'connected_gene': 'RN7SKP126', 'score': 0.77}, {'connected_gene': 'GC01P192837', 'score': 0.26}, {'connected_gene': 'LINC01032', 'score': 0.2}]
chr1	GH01I192906	192906305	192909055	0.83	[{'connected_gene': 'RGS2', 'score': 17.76}, {'connected_gene': 'RGS1', 'score': 10.07}, {'connected_gene': 'CDC73', 'score': 5.02}, {'connected_gene': 'TROVE2', 'score': 2.31}, {'connected_gene': 'RN7SKP126', 'score': 0.29}, {'connected_gene': 'LINC01032', 'score': 0.26}, {'connected_gene': 'GC01P192837', 'score': 0.2}]
chr1	GH01I192945	192945507	192945642	0.28	[{'connected_gene': 'RGS1', 'score': 8.74}, {'connected_gene': 'CDC73', 'score': 3.55}, {'connected_gene': 'RGS2', 'score': 3.27}, {'connected_gene': 'TROVE2', 'score': 2.15}, {'connected_gene': 'LINC01032', 'score': 0.77}, {'connected_gene': 'RN7SKP126', 'score': 0.2}]
chr1	GH01I192580	192580483	192580765	1.21	[{'connected_gene': 'RGS1', 'score': 14.64}, {'connected_gene': 'LOC647150', 'score': 13.07}, {'connected_gene': 'TROVE2', 'score': 11.17}, {'connected_gene': 'CDC73', 'score': 10.03}, {'connected_gene': 'RGS2', 'score': 1.28}, {'connected_gene': 'GC01P192596', 'score': 0.37}, {'connected_gene': 'LOC105371664', 'score': 0.25}]
chr1	GH01I192902	192902845	192906224	1.01	[{'connected_gene': 'RGS1', 'score': 12.3}, {'connected_gene': 'RGS2', 'score': 12.24}, {'connected_gene': 'CDC73', 'score': 1.55}, {'connected_gene': 'TROVE2', 'score': 1.25}, {'connected_gene': 'RN7SKP126', 'score': 0.31}, {'connected_gene': 'LINC01032', 'score': 0.26}, {'connected_gene': 'GC01P192837', 'score': 0.2}]
chr1	GH01I192788	192788154	192788600	0.96	[{'connected_gene': 'RGS1', 'score': 8.01}, {'connected_gene': 'RGS2', 'score': 6.04}, {'connected_gene': 'CDC73', 'score': 1.66}, {'connected_gene': 'TROVE2', 'score': 1.65}, {'connected_gene': 'LOC105371665', 'score': 0.77}, {'connected_gene': 'MIR4426', 'score': 0.19}]
chr1	GH01I192789	192789966	192790181	0.48	[{'connected_gene': 'RGS1', 'score': 8.48}, {'connected_gene': 'RGS2', 'score': 1.61}, {'connected_gene': 'CDC73', 'score': 1.33}, {'connected_gene': 'TROVE2', 'score': 1.17}, {'connected_gene': 'LOC105371665', 'score': 0.77}, {'connected_gene': 'MIR4426', 'score': 0.19}]
chr1	GH01I193229	193229291	193229440	0.2	[{'connected_gene': 'ENSG00000276735', 'score': 0.44}, {'connected_gene': 'B3GALT2', 'score': 0.26}, {'connected_gene': 'CDC73', 'score': 0.14}]
chr1	GH01I192951	192951338	192953145	1.16	[{'connected_gene': 'GC01P192950', 'score': 550.77}, {'connected_gene': 'RGS2', 'score': 19.35}, {'connected_gene': 'RGS1', 'score': 6.2}, {'connected_gene': 'CDC73', 'score': 5.84}, {'connected_gene': 'TROVE2', 'score': 2.57}, {'connected_gene': 'ZNF101P2', 'score': 0.26}]