PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000493998	[[1468100, 1468427], [1477170, 1477247]]	None
ENST00000496184	[[1468114, 1468427], [1476377, 1477244], [1477525, 1479067]]	None
ENST00000472100	[[1468254, 1468427], [1473845, 1474783], [1476377, 1476492], [1477170, 1477244], [1477525, 1477616], [1477732, 1477856], [1477924, 1477989], [1478475, 1478631], [1479560, 1479721], [1480226, 1482120], [1484287, 1485064], [1486348, 1486464], [1487210, 1487401], [1488255, 1488397], [1489875, 1489924], [1498819, 1499001]]	None
ENST00000467783	[[1473994, 1474535], [1479560, 1479658]]	None
ENST00000467394	[[1473995, 1474308], [1474736, 1474783], [1476377, 1476492], [1477170, 1477244], [1477525, 1477616], [1477732, 1477856], [1477924, 1477989], [1478475, 1478631], [1479560, 1479721], [1480226, 1481160]]	None
ENST00000405088	[[1473995, 1474308], [1474736, 1474783], [1476377, 1476492], [1477170, 1477244], [1477525, 1477616], [1477732, 1477856], [1477924, 1477989], [1478475, 1478631], [1479560, 1479721], [1480226, 1480320], [1481827, 1482120], [1484287, 1484986], [1498879, 1498962]]	[[1474231, 1474308], [1474736, 1474783], [1476377, 1476492], [1477170, 1477244], [1477525, 1477616], [1477732, 1477856], [1477924, 1477989], [1478475, 1478631], [1479560, 1479721], [1480226, 1480320], [1481827, 1482120], [1484287, 1484986], [1498879, 1498962]]
ENST00000470807	[[1474001, 1474308], [1474736, 1474783], [1476377, 1476492], [1477069, 1477244], [1477525, 1477549]]	None
ENST00000471899	[[1474001, 1474308], [1476377, 1476492], [1477170, 1477244], [1477525, 1477616], [1477732, 1477856], [1477924, 1477989], [1478475, 1478598]]	None
ENST00000479007	[[1474001, 1474308], [1474736, 1474783], [1476377, 1476492], [1477170, 1477244], [1477525, 1477616], [1477732, 1477856], [1477924, 1477989], [1478475, 1479507]]	None
ENST00000413446	[[1474001, 1474308], [1474736, 1474783], [1476377, 1476492], [1477170, 1477244], [1477525, 1477616], [1477732, 1477856], [1477924, 1477989], [1478475, 1478627], [1479560, 1479721], [1480226, 1480320], [1481827, 1482120], [1484287, 1485064], [1486348, 1486464], [1487210, 1487401], [1488255, 1488397], [1489875, 1490172]]	[[1477938, 1477989], [1478475, 1478627], [1479560, 1479721], [1480226, 1480320], [1481827, 1482120], [1484287, 1485064], [1486348, 1486464], [1487210, 1487401], [1488255, 1488397], [1489875, 1489941]]
ENST00000297508	[[1474001, 1474308], [1474736, 1474783], [1476377, 1476492], [1477170, 1477244], [1477525, 1477616], [1477732, 1477856], [1477924, 1477989], [1478475, 1478631], [1479560, 1479721], [1480226, 1480320], [1481827, 1482120], [1484287, 1485064], [1486348, 1486464], [1487210, 1487401], [1488255, 1488397], [1489875, 1489924], [1498819, 1499138]]	[[1474231, 1474308], [1474736, 1474783], [1476377, 1476492], [1477170, 1477244], [1477525, 1477616], [1477732, 1477856], [1477924, 1477989], [1478475, 1478631], [1479560, 1479721], [1480226, 1480320], [1481827, 1482120], [1484287, 1485064], [1486348, 1486464], [1487210, 1487401], [1488255, 1488397], [1489875, 1489924], [1498819, 1498962]]
ENST00000487187	[[1476378, 1476492], [1477170, 1477244], [1477732, 1477989], [1478475, 1478794]]	None
ENST00000460198	[[1477171, 1477244], [1477525, 1477616], [1477732, 1478101]]	None
ENST00000487156	[[1478560, 1478631], [1479560, 1480363]]	None
ENST00000482839	[[1484706, 1485064], [1486348, 1486464], [1487210, 1487588]]	None
ENST00000490608	[[1486292, 1486464], [1487210, 1487669]]	None
NM_182924	[[1473994, 1474308], [1474736, 1474783], [1476377, 1476492], [1477170, 1477244], [1477525, 1477616], [1477732, 1477856], [1477924, 1477989], [1478475, 1478631], [1479560, 1479721], [1480226, 1480320], [1481827, 1482120], [1484287, 1485064], [1486348, 1486464], [1487210, 1487401], [1488255, 1488397], [1489875, 1489924], [1498819, 1499109]]	[[1474231, 1474308], [1474736, 1474783], [1476377, 1476492], [1477170, 1477244], [1477525, 1477616], [1477732, 1477856], [1477924, 1477989], [1478475, 1478631], [1479560, 1479721], [1480226, 1480320], [1481827, 1482120], [1484287, 1485064], [1486348, 1486464], [1487210, 1487401], [1488255, 1488397], [1489875, 1489924], [1498819, 1498962]]

Promoter

Chrom	Start	End	Description
chr7	1499097	1499114	CAGE_peak_1_at_MICALL2_5end
chr7	1499116	1499122	CAGE_peak_3_at_MICALL2_5end
chr7	1499123	1499150	CAGE_peak_2_at_MICALL2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr7	GH07I001451	1451422	1452088	0.2	[{'connected_gene': 'PSMG3', 'score': 11.21}, {'connected_gene': 'PSMG3-AS1', 'score': 11.21}, {'connected_gene': 'MICALL2', 'score': 0.44}, {'connected_gene': 'ENSG00000233082', 'score': 0.09}]
chr7	GH07I001456	1456872	1464041	2.57	[{'connected_gene': 'MICALL2', 'score': 550.77}, {'connected_gene': 'ENSG00000225981', 'score': 550.77}, {'connected_gene': 'INTS1', 'score': 44.63}, {'connected_gene': 'DNAAF5', 'score': 30.01}, {'connected_gene': 'SUN1', 'score': 21.68}, {'connected_gene': 'CHST12', 'score': 19.59}, {'connected_gene': 'EIF3B', 'score': 12.07}, {'connected_gene': 'MRM2', 'score': 10.68}, {'connected_gene': 'MAFK', 'score': 5.19}, {'connected_gene': 'ENSG00000273230', 'score': 0.44}]
chr7	GH07I001473	1473705	1475054	1.15	[{'connected_gene': 'MICALL2', 'score': 5.29}, {'connected_gene': 'ENSG00000273230', 'score': 0.44}, {'connected_gene': 'GC07M001472', 'score': 0.44}, {'connected_gene': 'INTS1', 'score': 0.29}]
chr7	GH07I001475	1475449	1476127	0.31	[{'connected_gene': 'MICALL2', 'score': 6.72}, {'connected_gene': 'ENSG00000273230', 'score': 0.44}, {'connected_gene': 'GC07M001472', 'score': 0.44}, {'connected_gene': 'INTS1', 'score': 0.31}]
chr7	GH07I001446	1446578	1447105	0.52	[{'connected_gene': 'MICALL2', 'score': 0.39}, {'connected_gene': 'ENSG00000233082', 'score': 0.1}]
chr7	GH07I001369	1369165	1369334	0.79	[{'connected_gene': 'MICALL2', 'score': 0.16}, {'connected_gene': 'ENSG00000233082', 'score': 0.15}]
chr7	GH07I001411	1411852	1413533	1.1	[{'connected_gene': 'MICALL2', 'score': 5.76}, {'connected_gene': 'ENSG00000233082', 'score': 0.11}]
chr7	GH07I001447	1447453	1448826	0.6	[{'connected_gene': 'MICALL2', 'score': 0.39}, {'connected_gene': 'ENSG00000233082', 'score': 0.09}]
chr7	GH07I001452	1452385	1452534	0.63	[{'connected_gene': 'MICALL2', 'score': 0.44}, {'connected_gene': 'ENSG00000233082', 'score': 0.09}]
chr7	GH07I001418	1418545	1418734	0.74	[{'connected_gene': 'MICALL2', 'score': 0.26}, {'connected_gene': 'ENSG00000233082', 'score': 0.1}]
chr7	GH07I001444	1444281	1446197	0.43	[{'connected_gene': 'MICALL2', 'score': 0.39}, {'connected_gene': 'ENSG00000233082', 'score': 0.1}]
chr7	GH07I001417	1417422	1418000	1.03	[{'connected_gene': 'CHST12', 'score': 10.26}, {'connected_gene': 'MICALL2', 'score': 7.54}, {'connected_gene': 'ENSG00000233082', 'score': 0.1}]
chr7	GH07I001323	1323362	1323789	0.49	[{'connected_gene': 'UNCX', 'score': 11.73}, {'connected_gene': 'ENSG00000233082', 'score': 0.22}, {'connected_gene': 'MICALL2', 'score': 0.12}]
chr7	GH07I002279	2279311	2282974	1	[{'connected_gene': 'SNX8', 'score': 7.27}, {'connected_gene': 'MICALL2', 'score': 6.58}, {'connected_gene': 'IMMP1LP3', 'score': 0.44}, {'connected_gene': 'GC07P002270', 'score': 0.39}]
chr7	GH07I001453	1453934	1456433	1.2	[{'connected_gene': 'INTS1', 'score': 31.88}, {'connected_gene': 'ENSG00000225981', 'score': 15.7}, {'connected_gene': 'EIF3B', 'score': 10.44}, {'connected_gene': 'MICALL2', 'score': 0.77}, {'connected_gene': 'ENSG00000233082', 'score': 0.09}]
chr7	GH07I001377	1377178	1377521	0.53	[{'connected_gene': 'INTS1', 'score': 5.35}, {'connected_gene': 'MICALL2', 'score': 0.18}, {'connected_gene': 'ENSG00000233082', 'score': 0.14}]
chr7	GH07I001512	1512202	1518419	1.65	[{'connected_gene': 'INTS1', 'score': 23.41}, {'connected_gene': 'TMEM184A', 'score': 16.8}, {'connected_gene': 'MAFK', 'score': 6.9}, {'connected_gene': 'MICALL2', 'score': 5.2}, {'connected_gene': 'ZFAND2A', 'score': 2.92}, {'connected_gene': 'ENSG00000231927', 'score': 0.44}]
chr7	GH07I001289	1289271	1291691	1.04	[{'connected_gene': 'INTS1', 'score': 4.75}, {'connected_gene': 'PSMG3-AS1', 'score': 4.47}, {'connected_gene': 'ENSG00000233082', 'score': 0.34}, {'connected_gene': 'MICALL2', 'score': 0.1}]
chr7	GH07I001553	1553774	1561271	1.92	[{'connected_gene': 'TMEM184A', 'score': 564.19}, {'connected_gene': 'INTS1', 'score': 11.78}, {'connected_gene': 'PSMG3-AS1', 'score': 7.7}, {'connected_gene': 'MICALL2', 'score': 4.51}, {'connected_gene': 'PIR48186', 'score': 0.37}]
chr7	GH07I001449	1449796	1451396	0.31	[{'connected_gene': 'PSMG3-AS1', 'score': 11.21}, {'connected_gene': 'PSMG3', 'score': 11.21}, {'connected_gene': 'MICALL2', 'score': 0.44}, {'connected_gene': 'ENSG00000233082', 'score': 0.09}]
chr7	GH07I001313	1313485	1314691	0.43	[{'connected_gene': 'ENSG00000233082', 'score': 0.25}, {'connected_gene': 'MICALL2', 'score': 0.11}]
chr7	GH07I001300	1300117	1303083	0.43	[{'connected_gene': 'ENSG00000233082', 'score': 0.29}, {'connected_gene': 'MICALL2', 'score': 0.1}]
chr7	GH07I001274	1274522	1276887	0.52	[{'connected_gene': 'ENSG00000233082', 'score': 0.44}, {'connected_gene': 'MICALL2', 'score': 0.09}]
chr7	GH07I001297	1297788	1298099	0.6	[{'connected_gene': 'ENSG00000233082', 'score': 0.29}, {'connected_gene': 'MICALL2', 'score': 0.1}]
chr7	GH07I001268	1268983	1269209	1	[{'connected_gene': 'ENSG00000233082', 'score': 550.77}, {'connected_gene': 'MICALL2', 'score': 0.08}]
chr7	GH07I001540	1540666	1542184	0.38	[{'connected_gene': 'PIR48186', 'score': 550.77}, {'connected_gene': 'PIR32494', 'score': 550.77}, {'connected_gene': 'GC07P001540', 'score': 550.77}, {'connected_gene': 'INTS1', 'score': 17.86}, {'connected_gene': 'MICALL2', 'score': 7.13}, {'connected_gene': 'MAFK', 'score': 0.39}, {'connected_gene': 'TMEM184A', 'score': 0.37}]