PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000515255	[[106629940, 106630173], [106647735, 106647987], [106650562, 106650656], [106744110, 106744226], [106744387, 106744432], [106746828, 106746957], [106755617, 106755751], [106759015, 106759046], [106763221, 106763291], [106766597, 106766866]]	None
ENST00000394730	[[106629940, 106630173], [106638749, 106638935], [106640216, 106640684], [106647735, 106647987], [106650562, 106650656], [106744110, 106744226], [106744387, 106744432], [106746828, 106746957], [106755617, 106755751], [106759015, 106759046], [106763221, 106763291], [106766597, 106768882]]	[[106638770, 106638935], [106640216, 106640684], [106647735, 106647987], [106650562, 106650656], [106744110, 106744226], [106744387, 106744432], [106746828, 106746957], [106755617, 106755751], [106759015, 106759046], [106763221, 106763291], [106766597, 106766734]]
ENST00000484843	[[106629943, 106630173], [106638749, 106639196], [106640216, 106640684], [106647735, 106647987], [106650562, 106650656], [106744110, 106744847]]	None
ENST00000515279	[[106629974, 106630173], [106638749, 106639196], [106640216, 106640684], [106647735, 106647987], [106650562, 106650656], [106744110, 106744226], [106744387, 106744432], [106746828, 106746957], [106755617, 106755751], [106759015, 106759046], [106763221, 106763291], [106766597, 106768885]]	[[106638770, 106639196], [106640216, 106640684], [106647735, 106647987], [106650562, 106650656], [106744110, 106744226], [106744387, 106744432], [106746828, 106746957], [106755617, 106755751], [106759015, 106759046], [106763221, 106763291], [106766597, 106766734]]
ENST00000360505	[[106631966, 106632020], [106638749, 106639196], [106640216, 106640684], [106647735, 106647987], [106650562, 106650656], [106744110, 106744226], [106744387, 106744432], [106746828, 106746957], [106755617, 106755751], [106759015, 106759046], [106763221, 106763291], [106766597, 106766911]]	[[106638770, 106639196], [106640216, 106640684], [106647735, 106647987], [106650562, 106650656], [106744110, 106744226], [106744387, 106744432], [106746828, 106746957], [106755617, 106755751], [106759015, 106759046], [106763221, 106763291], [106766597, 106766734]]
ENST00000394728	[[106638770, 106639196], [106640216, 106640684], [106647735, 106647987], [106650562, 106650656], [106744110, 106744226], [106744387, 106744432], [106746828, 106746957], [106755617, 106755751], [106759015, 106759046], [106763221, 106763291], [106766597, 106768881]]	[[106638770, 106639196], [106640216, 106640684], [106647735, 106647987], [106650562, 106650656], [106744110, 106744226], [106744387, 106744432], [106746828, 106746957], [106755617, 106755751], [106759015, 106759046], [106763221, 106763291], [106766597, 106766734]]
ENST00000512828	[[106629934, 106630363], [106638749, 106638892]]	[[106638770, 106638892]]
ENST00000507281	[[106629943, 106630173], [106638749, 106638935], [106640216, 106640684], [106647735, 106647987], [106650562, 106650656], [106682181, 106683042]]	[[106638770, 106638935], [106640216, 106640684], [106647735, 106647987], [106650562, 106650656], [106682181, 106682225]]
ENST00000510865	[[106631969, 106632026], [106638749, 106639196], [106640216, 106640290]]	[[106638770, 106639196], [106640216, 106640290]]
ENST00000509336	[[106632002, 106632197], [106638749, 106639196], [106640216, 106640292]]	[[106638770, 106639196], [106640216, 106640292]]
ENST00000503409	[[106638782, 106638935], [106640216, 106640716]]	None
NM_024751	[[106629940, 106630173], [106638749, 106638935], [106640216, 106640684], [106647735, 106647987], [106650562, 106650656], [106744110, 106744226], [106744387, 106744432], [106746828, 106746957], [106755617, 106755751], [106759015, 106759046], [106763221, 106763291], [106766597, 106768882]]	[[106638770, 106638935], [106640216, 106640684], [106647735, 106647987], [106650562, 106650656], [106744110, 106744226], [106744387, 106744432], [106746828, 106746957], [106755617, 106755751], [106759015, 106759046], [106763221, 106763291], [106766597, 106766734]]
NM_001031720	[[106631969, 106632020], [106638749, 106639196], [106640216, 106640684], [106647735, 106647987], [106650562, 106650656], [106744110, 106744226], [106744387, 106744432], [106746828, 106746957], [106755617, 106755751], [106759015, 106759046], [106763221, 106763291], [106766597, 106768882]]	[[106638770, 106639196], [106640216, 106640684], [106647735, 106647987], [106650562, 106650656], [106744110, 106744226], [106744387, 106744432], [106746828, 106746957], [106755617, 106755751], [106759015, 106759046], [106763221, 106763291], [106766597, 106766734]]

Promoter

Chrom	Start	End	Description
chr4	106629929	106629982	CAGE_peak_1_at_GSTCD_5end
chr4	106629993	106630007	CAGE_peak_2_at_GSTCD_5end
chr4	106630025	106630034	CAGE_peak_3_at_GSTCD_5end
chr4	106631966	106631974	CAGE_peak_4_at_GSTCD_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr4	GH04I105540	105540571	105542273	0.31	[{'connected_gene': 'GSTCD', 'score': 9.73}, {'connected_gene': 'INTS12', 'score': 9.68}, {'connected_gene': 'ENSG00000248778', 'score': 7.97}, {'connected_gene': 'PPA2', 'score': 5.15}, {'connected_gene': 'ATP5F1EP1', 'score': 0.44}, {'connected_gene': 'LOC105377352', 'score': 0.39}]
chr4	GH04I105707	105707230	105711253	2.15	[{'connected_gene': 'GSTCD', 'score': 604.06}, {'connected_gene': 'INTS12', 'score': 568.23}, {'connected_gene': 'LOC101929577', 'score': 54.73}, {'connected_gene': 'TBCK', 'score': 44.36}, {'connected_gene': 'EEF1A1P9', 'score': 21.37}, {'connected_gene': 'AIMP1', 'score': 18.47}, {'connected_gene': 'LOC101929529', 'score': 11.76}, {'connected_gene': 'TET2', 'score': 9.93}, {'connected_gene': 'ARHGEF38', 'score': 0.1}]
chr4	GH04I105859	105859324	105859473	0.6	[{'connected_gene': 'GSTCD', 'score': 6.74}, {'connected_gene': 'LOC101929529', 'score': 0.29}, {'connected_gene': 'INTS12', 'score': 0.28}, {'connected_gene': 'NPNT', 'score': 0.28}]
chr4	GH04I105765	105765644	105766566	0.89	[{'connected_gene': 'GSTCD', 'score': 0.22}, {'connected_gene': 'LOC101929529', 'score': 0.21}, {'connected_gene': 'INTS12', 'score': 0.13}]
chr4	GH04I105683	105683124	105683313	0.57	[{'connected_gene': 'INTS12', 'score': 29.11}, {'connected_gene': 'GSTCD', 'score': 11.2}, {'connected_gene': 'ENSG00000248778', 'score': 0.77}, {'connected_gene': 'ARHGEF38', 'score': 0.12}]
chr4	GH04I105713	105713946	105715200	0.77	[{'connected_gene': 'INTS12', 'score': 18.23}, {'connected_gene': 'GSTCD', 'score': 0.44}, {'connected_gene': 'LOC101929529', 'score': 0.14}]
chr4	GH04I105612	105612919	105614499	0.52	[{'connected_gene': 'INTS12', 'score': 18.37}, {'connected_gene': 'ARHGEF38', 'score': 10.54}, {'connected_gene': 'LOC105377352', 'score': 10.54}, {'connected_gene': 'GSTCD', 'score': 10.05}, {'connected_gene': 'ARHGEF38-IT1', 'score': 0.23}, {'connected_gene': 'ENSG00000248778', 'score': 0.2}]
chr4	GH04I105808	105808153	105809465	0.77	[{'connected_gene': 'INTS12', 'score': 16.98}, {'connected_gene': 'LOC101929529', 'score': 0.37}, {'connected_gene': 'GSTCD', 'score': 0.15}]
chr4	GH04I105841	105841179	105843220	0.2	[{'connected_gene': 'INTS12', 'score': 16.75}, {'connected_gene': 'LOC101929529', 'score': 0.37}, {'connected_gene': 'NPNT', 'score': 0.23}, {'connected_gene': 'GSTCD', 'score': 0.12}]
chr4	GH04I105718	105718743	105719848	0.31	[{'connected_gene': 'PPA2', 'score': 4.95}, {'connected_gene': 'GSTCD', 'score': 0.39}, {'connected_gene': 'LOC101929529', 'score': 0.14}, {'connected_gene': 'INTS12', 'score': 0.1}]
chr4	GH04I105637	105637601	105637800	0.84	[{'connected_gene': 'LOC101929577', 'score': 43.36}, {'connected_gene': 'GSTCD', 'score': 42.29}, {'connected_gene': 'TBCK', 'score': 26.89}, {'connected_gene': 'LOC105377352', 'score': 10.81}, {'connected_gene': 'ARHGEF38', 'score': 10.81}, {'connected_gene': 'AIMP1', 'score': 9.88}, {'connected_gene': 'ENSG00000248778', 'score': 0.26}, {'connected_gene': 'ARHGEF38-IT1', 'score': 0.18}]
chr4	GH04I104905	104905502	104907564	0.54	[{'connected_gene': 'ENSG00000248373', 'score': 550.77}, {'connected_gene': 'GSTCD', 'score': 4.57}, {'connected_gene': 'GC04P104900', 'score': 0.44}, {'connected_gene': 'ENSG00000248242', 'score': 0.21}]
chr4	GH04I105969	105969816	105971495	0.2	[{'connected_gene': 'ENSG00000250740', 'score': 10.92}, {'connected_gene': 'INTS12', 'score': 10.16}, {'connected_gene': 'NPNT', 'score': 10.15}, {'connected_gene': 'GSTCD', 'score': 4.41}, {'connected_gene': 'LOC101929577', 'score': 0.23}]
chr4	GH04I104965	104965751	104968245	0.97	[{'connected_gene': 'ENSG00000248242', 'score': 550.77}, {'connected_gene': 'TET2', 'score': 11.05}, {'connected_gene': 'GSTCD', 'score': 5.0}, {'connected_gene': 'RNU6-351P', 'score': 0.44}, {'connected_gene': 'ENSG00000248373', 'score': 0.22}]