PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000569515	[[121618561, 121618693], [121619310, 121619396], [121650296, 121650490], [121651981, 121652068]]	None
ENST00000360003	[[121588971, 121591112], [121591523, 121591612], [121595051, 121595216], [121596407, 121596541], [121598046, 121598212], [121600354, 121600472], [121601983, 121602107], [121602759, 121602938], [121607124, 121607225], [121608936, 121609088], [121612561, 121612706], [121616849, 121616951], [121618395, 121618437], [121618552, 121618693], [121619310, 121619396], [121632038, 121632266]]	[[121590985, 121591112], [121591523, 121591612], [121595051, 121595216], [121596407, 121596541], [121598046, 121598212], [121600354, 121600472], [121601983, 121602107], [121602759, 121602938], [121607124, 121607225], [121608936, 121609088], [121612561, 121612706], [121616849, 121616951], [121618395, 121618437], [121618552, 121618693], [121619310, 121619396], [121632038, 121632096]]
ENST00000369077	[[121590708, 121591112], [121591523, 121591612], [121595051, 121595216], [121596407, 121596541], [121598046, 121598212], [121600354, 121600472], [121601983, 121602107], [121602765, 121602938], [121607124, 121607225], [121608936, 121609088], [121612561, 121612706], [121616849, 121616951], [121618395, 121618437], [121618552, 121618693], [121619310, 121619396], [121632038, 121632361]]	[[121590985, 121591112], [121591523, 121591612], [121595051, 121595216], [121596407, 121596541], [121598046, 121598212], [121600354, 121600472], [121601983, 121602107], [121602765, 121602938], [121607124, 121607225], [121608936, 121609088], [121612561, 121612706], [121616849, 121616951], [121618395, 121618437], [121618552, 121618693], [121619310, 121619396], [121632038, 121632096]]
ENST00000466047	[[121590712, 121591112], [121591523, 121591612], [121595051, 121595216], [121596407, 121596541], [121598046, 121598212], [121600354, 121600472], [121601983, 121602107], [121602765, 121602938], [121607124, 121607225], [121608936, 121609088], [121612561, 121612684], [121616858, 121616951], [121618395, 121618437], [121618552, 121618693], [121619310, 121619396], [121632942, 121633133]]	None
ENST00000495407	[[121602293, 121602938], [121607124, 121607225], [121608936, 121609088], [121612561, 121612706], [121616849, 121617749]]	None
NM_024834	[[121588915, 121591112], [121591523, 121591612], [121595051, 121595216], [121596407, 121596541], [121598046, 121598212], [121600354, 121600472], [121601983, 121602107], [121602759, 121602938], [121607124, 121607225], [121608936, 121609088], [121612561, 121612706], [121616849, 121616951], [121618395, 121618437], [121618552, 121618693], [121619310, 121619396], [121632038, 121632395]]	[[121590985, 121591112], [121591523, 121591612], [121595051, 121595216], [121596407, 121596541], [121598046, 121598212], [121600354, 121600472], [121601983, 121602107], [121602759, 121602938], [121607124, 121607225], [121608936, 121609088], [121612561, 121612706], [121616849, 121616951], [121618395, 121618437], [121618552, 121618693], [121619310, 121619396], [121632038, 121632096]]
NM_001256378	[[121588915, 121591112], [121591523, 121591612], [121595051, 121595216], [121596407, 121596541], [121598046, 121598212], [121600354, 121600472], [121601983, 121602107], [121602765, 121602938], [121607124, 121607225], [121608936, 121609088], [121612561, 121612706], [121616849, 121616951], [121618395, 121618437], [121618552, 121618693], [121619310, 121619396], [121632038, 121632395]]	[[121590985, 121591112], [121591523, 121591612], [121595051, 121595216], [121596407, 121596541], [121598046, 121598212], [121600354, 121600472], [121601983, 121602107], [121602765, 121602938], [121607124, 121607225], [121608936, 121609088], [121612561, 121612706], [121616849, 121616951], [121618395, 121618437], [121618552, 121618693], [121619310, 121619396], [121632038, 121632096]]
NM_001256379	[[121588915, 121591112], [121591523, 121591612], [121595051, 121595216], [121596407, 121596541], [121598046, 121598212], [121600354, 121600472], [121601983, 121602107], [121602765, 121602938], [121607124, 121607225], [121608936, 121609088], [121612561, 121612684], [121616858, 121616951], [121618395, 121618437], [121618552, 121618693], [121619310, 121619396], [121632942, 121633140]]	[[121590985, 121591112], [121591523, 121591612], [121595051, 121595216], [121596407, 121596541], [121598046, 121598212], [121600354, 121600472], [121601983, 121602107], [121602765, 121602938], [121607124, 121607225], [121608936, 121609088], [121612561, 121612616]]

Promoter

Chrom	Start	End	Description
chr10	121632344	121632418	CAGE_peak_1_at_MCMBP_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr10	GH10I119650	119650584	119660678	2.72	[{'connected_gene': 'BAG3', 'score': 568.34}, {'connected_gene': 'TIAL1', 'score': 21.86}, {'connected_gene': 'SEC23IP', 'score': 20.53}, {'connected_gene': 'INPP5F', 'score': 11.7}, {'connected_gene': 'MCMBP', 'score': 10.82}, {'connected_gene': 'GRK5', 'score': 1.18}, {'connected_gene': 'TXNP1', 'score': 0.31}]
chr10	GH10I119078	119078210	119082192	2.26	[{'connected_gene': 'EIF3A', 'score': 550.77}, {'connected_gene': 'GC10P119080', 'score': 550.77}, {'connected_gene': 'TIAL1', 'score': 24.87}, {'connected_gene': 'SEC23IP', 'score': 23.99}, {'connected_gene': 'MCMBP', 'score': 21.83}, {'connected_gene': 'NANOS1', 'score': 9.97}, {'connected_gene': 'RN7SL749P', 'score': 4.76}, {'connected_gene': 'ENSG00000222588', 'score': 0.37}]
chr10	GH10I119871	119871000	119874233	2.01	[{'connected_gene': 'MCMBP', 'score': 563.16}, {'connected_gene': 'SEC23IP', 'score': 18.88}, {'connected_gene': 'TIAL1', 'score': 16.31}, {'connected_gene': 'WDR11', 'score': 9.76}, {'connected_gene': 'INPP5F', 'score': 8.57}, {'connected_gene': 'ENSG00000282413', 'score': 0.23}]
chr10	GH10I119891	119891514	119893918	2.08	[{'connected_gene': 'MCMBP', 'score': 557.71}, {'connected_gene': 'SEC23IP', 'score': 557.3}, {'connected_gene': 'INPP5F', 'score': 8.18}, {'connected_gene': 'MIR4682', 'score': 0.2}]
chr10	GH10I119279	119279226	119280589	0.62	[{'connected_gene': 'TIAL1', 'score': 17.39}, {'connected_gene': 'SEC23IP', 'score': 15.9}, {'connected_gene': 'MCMBP', 'score': 12.98}, {'connected_gene': 'RPL17P36', 'score': 10.76}, {'connected_gene': 'GC10P119246', 'score': 0.29}, {'connected_gene': 'LOC105378511', 'score': 0.22}, {'connected_gene': 'GRK5', 'score': 0.19}]
chr10	GH10I119219	119219503	119224252	1.21	[{'connected_gene': 'TIAL1', 'score': 31.78}, {'connected_gene': 'SEC23IP', 'score': 27.72}, {'connected_gene': 'SFXN4', 'score': 24.34}, {'connected_gene': 'RPL17P36', 'score': 19.04}, {'connected_gene': 'MCMBP', 'score': 14.29}, {'connected_gene': 'RN7SL749P', 'score': 0.44}, {'connected_gene': 'GRK5', 'score': 0.39}, {'connected_gene': 'GC10P119246', 'score': 0.34}]
chr10	GH10I119594	119594834	119598085	2.09	[{'connected_gene': 'TIAL1', 'score': 575.61}, {'connected_gene': 'LOC105378512', 'score': 550.77}, {'connected_gene': 'GC10P119597', 'score': 550.77}, {'connected_gene': 'SEC23IP', 'score': 24.02}, {'connected_gene': 'MCMBP', 'score': 21.86}, {'connected_gene': 'ENSG00000271353', 'score': 5.36}, {'connected_gene': 'RGS10', 'score': 4.96}]
chr10	GH10I120850	120850540	120852993	2.11	[{'connected_gene': 'WDR11', 'score': 628.14}, {'connected_gene': 'WDR11-AS1', 'score': 550.77}, {'connected_gene': 'SEC23IP', 'score': 28.64}, {'connected_gene': 'MCMBP', 'score': 9.77}, {'connected_gene': 'ENSG00000271670', 'score': 0.31}]
chr10	GH10I119848	119848125	119851265	0.38	[{'connected_gene': 'INPP5F', 'score': 20.17}, {'connected_gene': 'MCMBP', 'score': 17.99}, {'connected_gene': 'SEC23IP', 'score': 10.92}, {'connected_gene': 'BAG3', 'score': 10.5}, {'connected_gene': 'EIF3A', 'score': 9.16}, {'connected_gene': 'ENSG00000222588', 'score': 9.16}, {'connected_gene': 'SNORA19', 'score': 9.16}, {'connected_gene': 'ENSG00000282413', 'score': 0.29}]
chr10	GH10I119759	119759787	119762329	0.79	[{'connected_gene': 'INPP5F', 'score': 24.06}, {'connected_gene': 'MCMBP', 'score': 11.77}, {'connected_gene': 'SEC23IP', 'score': 10.84}, {'connected_gene': 'GC10P119759', 'score': 0.77}, {'connected_gene': 'RN7SL846P', 'score': 0.44}]
chr10	GH10I119677	119677923	119683217	1.26	[{'connected_gene': 'INPP5F', 'score': 18.97}, {'connected_gene': 'TIAL1', 'score': 17.51}, {'connected_gene': 'SEC23IP', 'score': 15.95}, {'connected_gene': 'MCMBP', 'score': 13.03}, {'connected_gene': 'RPL17P36', 'score': 10.74}, {'connected_gene': 'TXNP1', 'score': 8.67}, {'connected_gene': 'BAG3', 'score': 7.94}]
chr10	GH10I119313	119313373	119320166	1.72	[{'connected_gene': 'SEC23IP', 'score': 27.76}, {'connected_gene': 'TIAL1', 'score': 21.84}, {'connected_gene': 'MCMBP', 'score': 14.29}, {'connected_gene': 'RPL17P36', 'score': 10.05}, {'connected_gene': 'LOC105378511', 'score': 0.37}, {'connected_gene': 'GC10P119246', 'score': 0.19}, {'connected_gene': 'GRK5', 'score': 0.14}]
chr10	GH10I119859	119859509	119859658	0.59	[{'connected_gene': 'SEC23IP', 'score': 11.54}, {'connected_gene': 'INPP5F', 'score': 10.98}, {'connected_gene': 'BAG3', 'score': 10.37}, {'connected_gene': 'MCMBP', 'score': 0.29}, {'connected_gene': 'ENSG00000282413', 'score': 0.26}]
chr10	GH10I119333	119333424	119338887	1.13	[{'connected_gene': 'LOC105378511', 'score': 550.77}, {'connected_gene': 'TIAL1', 'score': 17.4}, {'connected_gene': 'SEC23IP', 'score': 15.9}, {'connected_gene': 'RPL17P36', 'score': 14.56}, {'connected_gene': 'MCMBP', 'score': 12.98}, {'connected_gene': 'GC10P119246', 'score': 0.17}, {'connected_gene': 'GRK5', 'score': 0.13}]