PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000409484	[[172378756, 172378801], [172398094, 172398303], [172409855, 172410010], [172411033, 172412117]]	[[172378782, 172378801], [172398094, 172398303], [172409855, 172410010], [172411033, 172411337]]
ENST00000468308	[[172378857, 172379248], [172398094, 172398303], [172407487, 172407650]]	None
ENST00000321348	[[172378857, 172379248], [172398094, 172398303], [172409855, 172410010], [172411033, 172414643]]	[[172379055, 172379248], [172398094, 172398303], [172409855, 172410010], [172411033, 172411337]]
ENST00000375252	[[172378986, 172379248], [172409855, 172410010], [172411033, 172414156]]	[[172379055, 172379248], [172409855, 172410010], [172411033, 172411159]]
ENST00000474182	[[172379019, 172379248], [172396333, 172396381], [172398094, 172398282]]	None
ENST00000494587	[[172379020, 172379248], [172397317, 172397638]]	None
ENST00000445146	[[172379588, 172379822], [172398094, 172398303], [172409855, 172410010], [172411033, 172411117]]	[[172379746, 172379822], [172398094, 172398303], [172409855, 172410010], [172411033, 172411117]]
NM_001256909	[[172378756, 172378801], [172398094, 172398303], [172409855, 172410010], [172411033, 172414643]]	[[172378782, 172378801], [172398094, 172398303], [172409855, 172410010], [172411033, 172411337]]
NM_001127383	[[172378865, 172379248], [172409855, 172410010], [172411033, 172414643]]	[[172379055, 172379248], [172409855, 172410010], [172411033, 172411159]]
NM_024843	[[172378865, 172379248], [172398094, 172398303], [172409855, 172410010], [172411033, 172414643]]	[[172379055, 172379248], [172398094, 172398303], [172409855, 172410010], [172411033, 172411337]]

Promoter

Chrom	Start	End	Description
chr2	172378603	172378632	CAGE_peak_5_at_CYBRD1_5end
chr2	172378976	172378999	CAGE_peak_1_at_CYBRD1_5end
chr2	172379010	172379029	CAGE_peak_2_at_CYBRD1_5end
chr2	172412030	172412046	CAGE_peak_3_at_CYBRD1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr2	GH02I171430	171430548	171435764	2.35	[{'connected_gene': 'DCAF17', 'score': 577.18}, {'connected_gene': 'METTL8', 'score': 569.3}, {'connected_gene': 'DAP3P2', 'score': 33.87}, {'connected_gene': 'GORASP2', 'score': 20.84}, {'connected_gene': 'RPS15P4', 'score': 10.42}, {'connected_gene': 'CYBRD1', 'score': 7.54}, {'connected_gene': 'TLK1', 'score': 1.93}, {'connected_gene': 'GC02M171404', 'score': 0.31}]
chr2	GH02I171408	171408833	171410894	0.79	[{'connected_gene': 'CYBRD1', 'score': 5.33}, {'connected_gene': 'GC02M171404', 'score': 0.77}, {'connected_gene': 'METTL8', 'score': 0.34}, {'connected_gene': 'DCAF17', 'score': 0.34}]
chr2	GH02I171412	171412201	171412400	0.2	[{'connected_gene': 'CYBRD1', 'score': 5.34}, {'connected_gene': 'GC02M171404', 'score': 0.44}, {'connected_gene': 'METTL8', 'score': 0.34}, {'connected_gene': 'DCAF17', 'score': 0.34}]
chr2	GH02I171415	171415656	171416840	1.14	[{'connected_gene': 'CYBRD1', 'score': 5.28}, {'connected_gene': 'GC02M171404', 'score': 0.39}, {'connected_gene': 'METTL8', 'score': 0.37}, {'connected_gene': 'DCAF17', 'score': 0.37}]
chr2	GH02I171482	171482167	171483660	0.49	[{'connected_gene': 'CYBRD1', 'score': 12.17}, {'connected_gene': 'METTL8', 'score': 12.07}, {'connected_gene': 'GC02M171472', 'score': 0.44}, {'connected_gene': 'DAP3P2', 'score': 0.44}, {'connected_gene': 'DCAF17', 'score': 0.25}]
chr2	GH02I171346	171346330	171348682	1.2	[{'connected_gene': 'CYBRD1', 'score': 11.05}, {'connected_gene': 'GC02M171300', 'score': 0.44}, {'connected_gene': 'GC02M171375', 'score': 0.31}, {'connected_gene': 'METTL8', 'score': 0.17}]
chr2	GH02I171513	171513610	171514660	0.88	[{'connected_gene': 'CYBRD1', 'score': 13.42}, {'connected_gene': 'RPS15P4', 'score': 0.77}, {'connected_gene': 'GC02P171494', 'score': 0.34}]
chr2	GH02I171521	171521173	171524888	2.03	[{'connected_gene': 'CYBRD1', 'score': 588.66}, {'connected_gene': 'DAP3P2', 'score': 25.67}, {'connected_gene': 'RPS15P4', 'score': 10.68}, {'connected_gene': 'GORASP2', 'score': 9.9}, {'connected_gene': 'GC02P171545', 'score': 0.34}]
chr2	GH02I171613	171613974	171615587	0.58	[{'connected_gene': 'CYBRD1', 'score': 5.24}, {'connected_gene': 'RPL21P38', 'score': 0.31}, {'connected_gene': 'GC02M171653', 'score': 0.28}]
chr2	GH02I171553	171553971	171554120	0.75	[{'connected_gene': 'CYBRD1', 'score': 16.69}, {'connected_gene': 'GC02M171544', 'score': 0.44}, {'connected_gene': 'GC02M171563', 'score': 0.34}]
chr2	GH02I171574	171574046	171574600	1.04	[{'connected_gene': 'CYBRD1', 'score': 15.53}, {'connected_gene': 'GC02M171563', 'score': 0.77}, {'connected_gene': 'GC02M171544', 'score': 0.31}]
chr2	GH02I171530	171530317	171532506	0.86	[{'connected_gene': 'CYBRD1', 'score': 16.0}, {'connected_gene': 'GC02P171545', 'score': 0.39}]
chr2	GH02I171517	171517401	171517800	0.61	[{'connected_gene': 'RPS15P4', 'score': 550.77}, {'connected_gene': 'CYBRD1', 'score': 20.93}, {'connected_gene': 'GC02P171494', 'score': 0.34}]
chr2	GH02I171490	171490414	171491209	0.31	[{'connected_gene': 'DAP3P2', 'score': 550.77}, {'connected_gene': 'CYBRD1', 'score': 21.61}, {'connected_gene': 'METTL8', 'score': 7.51}, {'connected_gene': 'GC02M171472', 'score': 0.39}, {'connected_gene': 'DCAF17', 'score': 0.22}]
chr2	GH02I171491	171491871	171491960	0.2	[{'connected_gene': 'DAP3P2', 'score': 550.77}, {'connected_gene': 'GC02P171494', 'score': 550.77}, {'connected_gene': 'ENSG00000234061', 'score': 550.77}, {'connected_gene': 'CYBRD1', 'score': 10.78}]
chr2	GH02I171335	171335984	171337339	0.86	[{'connected_gene': 'GC02M171300', 'score': 550.77}, {'connected_gene': 'CYBRD1', 'score': 9.76}, {'connected_gene': 'GC02M171324', 'score': 0.39}, {'connected_gene': 'GC02M171323', 'score': 0.39}, {'connected_gene': 'METTL8', 'score': 0.15}]
chr2	GH02I171314	171314362	171328539	1.3	[{'connected_gene': 'GC02M171318', 'score': 550.77}, {'connected_gene': 'METTL8', 'score': 11.52}, {'connected_gene': 'CYBRD1', 'score': 9.35}, {'connected_gene': 'GC02M171324', 'score': 0.77}, {'connected_gene': 'GC02M171323', 'score': 0.77}, {'connected_gene': 'GC02M171300', 'score': 0.37}]
chr2	GH02I171403	171403048	171407885	1	[{'connected_gene': 'GC02M171404', 'score': 550.77}, {'connected_gene': 'METTL8', 'score': 12.11}, {'connected_gene': 'CYBRD1', 'score': 5.32}, {'connected_gene': 'GC02P171375', 'score': 0.31}]
chr2	GH02I172453	172452098	172452717	0.2	[{'connected_gene': 'ENSG00000226963', 'score': 12.63}, {'connected_gene': 'ITGA6', 'score': 12.6}, {'connected_gene': 'CYBRD1', 'score': 5.14}, {'connected_gene': 'ENSG00000232788', 'score': 0.39}]