PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000442697	[[100817404, 100822309], [100824882, 100825055], [100826753, 100826863], [100827673, 100827768], [100829867, 100830053], [100844196, 100844342], [100851606, 100851778], [100867595, 100867883]]	[[100822184, 100822309], [100824882, 100825055], [100826753, 100826863], [100827673, 100827768], [100829867, 100830053], [100844196, 100844342], [100851606, 100851778], [100867595, 100867728]]
ENST00000420137	[[100819916, 100822309], [100824882, 100825055], [100826753, 100826863], [100827673, 100827768], [100829867, 100830053], [100844196, 100844342], [100845916, 100845972], [100848873, 100848995], [100849698, 100849774], [100851606, 100851691]]	[[100849713, 100849774], [100851606, 100851691]]
ENST00000471101	[[100820552, 100822309], [100824882, 100825055], [100826753, 100826863], [100827673, 100827768], [100829867, 100830053], [100844196, 100844342], [100845916, 100848248]]	None
ENST00000334223	[[100820552, 100822309], [100824882, 100825055], [100826753, 100826863], [100827673, 100827768], [100829867, 100830053], [100844196, 100844342], [100867595, 100867745]]	[[100844337, 100844342], [100867595, 100867728]]
ENST00000455208	[[100821791, 100822309], [100824882, 100825055], [100826753, 100826863], [100827194, 100827310], [100827673, 100827754]]	[[100827265, 100827310], [100827673, 100827754]]
ENST00000398991	[[100824934, 100825055], [100826753, 100826863], [100827673, 100827768], [100829867, 100830053], [100831505, 100831532], [100844196, 100844342], [100867595, 100867752]]	[[100844337, 100844342], [100867595, 100867728]]
ENST00000426476	[[100829885, 100830053], [100844196, 100844342], [100845916, 100845972], [100851606, 100851778], [100867595, 100867715]]	[[100845947, 100845972], [100851606, 100851778], [100867595, 100867715]]
ENST00000474664	[[100843676, 100844342], [100851606, 100851778], [100867595, 100867717]]	None
ENST00000493110	[[100844196, 100844342], [100848873, 100848995], [100851606, 100851746]]	None
ENST00000471738	[[100844837, 100845034], [100845916, 100845972], [100851606, 100851778], [100867595, 100867731]]	None
ENST00000469942	[[100845463, 100851778], [100867595, 100867743]]	None
NM_001031723	[[100817404, 100822309], [100824882, 100825055], [100826753, 100826863], [100827673, 100827768], [100829867, 100830053], [100844196, 100844342], [100851606, 100851778], [100867595, 100867883]]	[[100822184, 100822309], [100824882, 100825055], [100826753, 100826863], [100827673, 100827768], [100829867, 100830053], [100844196, 100844342], [100851606, 100851778], [100867595, 100867728]]
NM_001278310	[[100817404, 100822309], [100824882, 100825055], [100826753, 100826863], [100827673, 100827768], [100829867, 100830053], [100844196, 100844342], [100867595, 100867883]]	[[100822184, 100822309], [100824882, 100825055], [100826753, 100826863], [100827673, 100827768], [100829867, 100830053], [100844196, 100844342], [100867595, 100867699]]
NM_001278311	[[100844840, 100845034], [100845916, 100845972], [100851606, 100851778], [100867595, 100867883]]	[[100845947, 100845972], [100851606, 100851778], [100867595, 100867728]]

Promoter

Chrom	Start	End	Description
chr4	100867736	100867782	CAGE_peak_1_at_DNAJB14_5end
chr4	100867784	100867795	CAGE_peak_5_at_DNAJB14_5end
chr4	100867802	100867819	CAGE_peak_4_at_DNAJB14_5end
chr4	100867825	100867863	CAGE_peak_2_at_DNAJB14_5end
chr4	100867864	100867889	CAGE_peak_3_at_DNAJB14_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr4	GH04I099829	99829998	99837548	0.46	[{'connected_gene': 'LAMTOR3', 'score': 10.57}, {'connected_gene': 'TRMT10A', 'score': 10.5}, {'connected_gene': 'MTTP', 'score': 10.5}, {'connected_gene': 'DAPP1', 'score': 8.18}, {'connected_gene': 'DNAJB14', 'score': 7.22}, {'connected_gene': 'ENSG00000279913', 'score': 0.39}, {'connected_gene': 'LOC285556', 'score': 0.39}]
chr4	GH04I099893	99893122	99895379	1.96	[{'connected_gene': 'LAMTOR3', 'score': 550.77}, {'connected_gene': 'DNAJB14', 'score': 23.39}, {'connected_gene': 'LOC256880', 'score': 12.13}, {'connected_gene': 'H2AFZ', 'score': 12.13}, {'connected_gene': 'MTTP', 'score': 9.98}, {'connected_gene': 'TRMT10A', 'score': 9.98}, {'connected_gene': 'DAPP1', 'score': 4.18}, {'connected_gene': 'ENSG00000279913', 'score': 0.23}]
chr4	GH04I099870	99870296	99872782	0.31	[{'connected_gene': 'LAMTOR3', 'score': 22.02}, {'connected_gene': 'DAPP1', 'score': 19.55}, {'connected_gene': 'TRMT10A', 'score': 10.34}, {'connected_gene': 'MTTP', 'score': 10.34}, {'connected_gene': 'DNAJB14', 'score': 9.1}, {'connected_gene': 'ENSG00000279913', 'score': 0.31}]
chr4	GH04I100095	100095801	100096400	0.96	[{'connected_gene': 'DNAJB14', 'score': 7.6}, {'connected_gene': 'LAMTOR3', 'score': 7.21}, {'connected_gene': 'DYNLL1P6', 'score': 0.23}, {'connected_gene': 'LOC101929353', 'score': 0.16}, {'connected_gene': 'LOC256880', 'score': 0.11}]
chr4	GH04I100093	100093064	100094309	1.16	[{'connected_gene': 'DNAJB14', 'score': 8.83}, {'connected_gene': 'LAMTOR3', 'score': 7.29}, {'connected_gene': 'DYNLL1P6', 'score': 0.23}, {'connected_gene': 'LOC101929353', 'score': 0.15}, {'connected_gene': 'LOC256880', 'score': 0.11}]
chr4	GH04I100016	100016068	100016609	0.31	[{'connected_gene': 'DNAJB14', 'score': 8.41}, {'connected_gene': 'LOC644721', 'score': 0.34}, {'connected_gene': 'DYNLL1P6', 'score': 0.31}, {'connected_gene': 'LOC256880', 'score': 0.2}]
chr4	GH04I099862	99862869	99864527	0.71	[{'connected_gene': 'DNAJB14', 'score': 20.58}, {'connected_gene': 'DAPP1', 'score': 11.71}, {'connected_gene': 'LOC256880', 'score': 11.49}, {'connected_gene': 'H2AFZ', 'score': 11.49}, {'connected_gene': 'LAMTOR3', 'score': 9.89}, {'connected_gene': 'ENSG00000279913', 'score': 0.37}]
chr4	GH04I099855	99855201	99858200	1.05	[{'connected_gene': 'DNAJB14', 'score': 20.33}, {'connected_gene': 'DAPP1', 'score': 12.22}, {'connected_gene': 'LOC256880', 'score': 11.46}, {'connected_gene': 'H2AFZ', 'score': 11.46}, {'connected_gene': 'ENSG00000279913', 'score': 0.39}, {'connected_gene': 'LAMTOR3', 'score': 0.28}]
chr4	GH04I099944	99944875	99951427	2.11	[{'connected_gene': 'DNAJB14', 'score': 562.96}, {'connected_gene': 'LOC256880', 'score': 550.77}, {'connected_gene': 'H2AFZ', 'score': 550.77}, {'connected_gene': 'LAMTOR3', 'score': 10.29}, {'connected_gene': 'DAPP1', 'score': 6.41}]
chr4	GH04I099827	99827064	99828974	0.77	[{'connected_gene': 'DNAJB14', 'score': 10.68}, {'connected_gene': 'LOC256880', 'score': 10.68}, {'connected_gene': 'H2AFZ', 'score': 10.68}, {'connected_gene': 'MTTP', 'score': 10.28}, {'connected_gene': 'TRMT10A', 'score': 10.28}, {'connected_gene': 'LAMTOR3', 'score': 9.71}, {'connected_gene': 'DAPP1', 'score': 8.89}, {'connected_gene': 'LOC100507053', 'score': 5.45}, {'connected_gene': 'LOC285556', 'score': 0.44}, {'connected_gene': 'ENSG00000279913', 'score': 0.37}]
chr4	GH04I099917	99917860	99920089	0.38	[{'connected_gene': 'DNAJB14', 'score': 24.07}, {'connected_gene': 'LOC256880', 'score': 12.63}, {'connected_gene': 'H2AFZ', 'score': 12.63}, {'connected_gene': 'DAPP1', 'score': 7.97}, {'connected_gene': 'ENSG00000279098', 'score': 0.34}, {'connected_gene': 'LAMTOR3', 'score': 0.34}]
chr4	GH04I100023	100023044	100023193	0.38	[{'connected_gene': 'DNAJB14', 'score': 12.79}, {'connected_gene': 'DYNLL1P6', 'score': 0.37}, {'connected_gene': 'LOC644721', 'score': 0.29}, {'connected_gene': 'LOC256880', 'score': 0.19}]
chr4	GH04I099810	99810416	99810693	0.22	[{'connected_gene': 'MTTP', 'score': 10.88}, {'connected_gene': 'TRMT10A', 'score': 10.88}, {'connected_gene': 'LOC256880', 'score': 10.5}, {'connected_gene': 'H2AFZ', 'score': 10.5}, {'connected_gene': 'DNAJB14', 'score': 10.5}, {'connected_gene': 'DAPP1', 'score': 8.77}, {'connected_gene': 'LOC285556', 'score': 0.39}, {'connected_gene': 'ENSG00000248676', 'score': 0.09}]
chr4	GH04I099811	99811904	99812013	0.59	[{'connected_gene': 'MTTP', 'score': 10.88}, {'connected_gene': 'TRMT10A', 'score': 10.88}, {'connected_gene': 'LOC256880', 'score': 10.5}, {'connected_gene': 'H2AFZ', 'score': 10.5}, {'connected_gene': 'DNAJB14', 'score': 10.5}, {'connected_gene': 'DAPP1', 'score': 0.77}, {'connected_gene': 'LOC285556', 'score': 0.39}, {'connected_gene': 'ENSG00000248676', 'score': 0.09}]
chr4	GH04I099824	99824442	99826151	0.58	[{'connected_gene': 'H2AFZ', 'score': 11.29}, {'connected_gene': 'LOC256880', 'score': 11.28}, {'connected_gene': 'DNAJB14', 'score': 11.28}, {'connected_gene': 'MTTP', 'score': 11.03}, {'connected_gene': 'TRMT10A', 'score': 11.03}, {'connected_gene': 'LAMTOR3', 'score': 9.2}, {'connected_gene': 'DAPP1', 'score': 8.93}, {'connected_gene': 'LOC285556', 'score': 0.77}, {'connected_gene': 'ENSG00000279913', 'score': 0.37}]
chr4	GH04I099819	99819836	99823026	1.3	[{'connected_gene': 'LOC285556', 'score': 550.77}, {'connected_gene': 'DNAJB14', 'score': 17.2}, {'connected_gene': 'TRMT10A', 'score': 13.12}, {'connected_gene': 'DAPP1', 'score': 12.77}, {'connected_gene': 'H2AFZ', 'score': 12.4}, {'connected_gene': 'MTTP', 'score': 11.03}, {'connected_gene': 'LOC256880', 'score': 10.59}, {'connected_gene': 'LAMTOR3', 'score': 10.53}, {'connected_gene': 'DDIT4L', 'score': 2.39}]
chr4	GH04I099845	99845009	99848258	1.49	[{'connected_gene': 'DAPP1', 'score': 22.91}, {'connected_gene': 'TRMT10A', 'score': 12.23}, {'connected_gene': 'MTTP', 'score': 10.58}, {'connected_gene': 'LAMTOR3', 'score': 10.0}, {'connected_gene': 'DNAJB14', 'score': 8.06}, {'connected_gene': 'ENSG00000279913', 'score': 0.77}]
chr4	GH04I099814	99814898	99818958	2.23	[{'connected_gene': 'DAPP1', 'score': 564.34}, {'connected_gene': 'TRMT10A', 'score': 12.27}, {'connected_gene': 'MTTP', 'score': 10.72}, {'connected_gene': 'DNAJB14', 'score': 10.59}, {'connected_gene': 'LOC256880', 'score': 10.58}, {'connected_gene': 'H2AFZ', 'score': 10.58}, {'connected_gene': 'LAMTOR3', 'score': 6.71}, {'connected_gene': 'LOC285556', 'score': 0.44}]
chr4	GH04I099868	99868008	99868681	0.31	[{'connected_gene': 'DAPP1', 'score': 11.69}, {'connected_gene': 'DNAJB14', 'score': 11.5}, {'connected_gene': 'LOC256880', 'score': 11.5}, {'connected_gene': 'H2AFZ', 'score': 11.5}, {'connected_gene': 'ENSG00000279913', 'score': 0.34}, {'connected_gene': 'LAMTOR3', 'score': 0.31}]
chr4	GH04I099838	99838291	99839489	0.2	[{'connected_gene': 'DAPP1', 'score': 11.65}, {'connected_gene': 'MTTP', 'score': 10.34}, {'connected_gene': 'TRMT10A', 'score': 10.34}, {'connected_gene': 'LAMTOR3', 'score': 10.04}, {'connected_gene': 'DNAJB14', 'score': 9.5}, {'connected_gene': 'ENSG00000279913', 'score': 0.44}, {'connected_gene': 'LOC285556', 'score': 0.37}]
chr4	GH04I099864	99864567	99865892	0.31	[{'connected_gene': 'DAPP1', 'score': 11.71}, {'connected_gene': 'LOC256880', 'score': 11.5}, {'connected_gene': 'DNAJB14', 'score': 11.5}, {'connected_gene': 'H2AFZ', 'score': 11.49}, {'connected_gene': 'ENSG00000279913', 'score': 0.34}, {'connected_gene': 'LAMTOR3', 'score': 0.31}]
chr4	GH04I100189	100189401	100190801	1.54	[{'connected_gene': 'DDIT4L', 'score': 550.77}, {'connected_gene': 'LOC101929353', 'score': 550.77}, {'connected_gene': 'DNAJB14', 'score': 5.61}, {'connected_gene': 'LOC256880', 'score': 0.07}]
chr4	GH04I099842	99842034	99843311	1.18	[{'connected_gene': 'ENSG00000279913', 'score': 550.77}, {'connected_gene': 'DAPP1', 'score': 11.68}, {'connected_gene': 'TRMT10A', 'score': 10.34}, {'connected_gene': 'MTTP', 'score': 10.34}, {'connected_gene': 'DNAJB14', 'score': 9.29}, {'connected_gene': 'LOC285556', 'score': 0.34}]