PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000224950	[[105642299, 105642599], [105648829, 105648902], [105651887, 105652010], [105657305, 105657477], [105658634, 105658758], [105659819, 105659981], [105664848, 105664914], [105670284, 105670380], [105677219, 105677414], [105677857, 105677963]]	[[105642441, 105642599], [105648829, 105648902], [105651887, 105652010], [105657305, 105657477], [105658634, 105658758], [105659819, 105659981], [105664848, 105664914], [105670284, 105670380], [105677219, 105677352]]
ENST00000369764	[[105642312, 105642599], [105648829, 105648902], [105651887, 105652010], [105657305, 105657477], [105658634, 105658758], [105659819, 105659981], [105664848, 105664914], [105670284, 105670380], [105677219, 105677427]]	[[105642441, 105642599], [105648829, 105648902], [105651887, 105652010], [105657305, 105657477], [105658634, 105658758], [105659819, 105659981], [105664848, 105664914], [105670284, 105670380], [105677219, 105677352]]
ENST00000466828	[[105642312, 105642599], [105648829, 105648902], [105651887, 105652010], [105657305, 105657477], [105658050, 105658135], [105658634, 105658758], [105659819, 105659981], [105664848, 105664914], [105670284, 105670380], [105677219, 105677414], [105677857, 105677888]]	None
ENST00000472951	[[105642502, 105642599], [105648829, 105648902], [105651887, 105652010], [105657305, 105657477], [105658634, 105658758], [105659717, 105659911]]	None
NM_024928	[[105637315, 105642599], [105648829, 105648902], [105651887, 105652010], [105657305, 105657477], [105658634, 105658758], [105659819, 105659981], [105664848, 105664914], [105670284, 105670380], [105677219, 105677414], [105677857, 105678045]]	[[105642441, 105642599], [105648829, 105648902], [105651887, 105652010], [105657305, 105657477], [105658634, 105658758], [105659819, 105659981], [105664848, 105664914], [105670284, 105670380], [105677219, 105677352]]

Promoter

Chrom	Start	End	Description
chr10	105677381	105677409	CAGE_peak_5_at_OBFC1_5end
chr10	105677427	105677438	CAGE_peak_7_at_OBFC1_5end
chr10	105677503	105677526	CAGE_peak_4_at_OBFC1_5end
chr10	105677535	105677580	CAGE_peak_2_at_OBFC1_5end
chr10	105677759	105677790	CAGE_peak_3_at_OBFC1_5end
chr10	105677886	105677995	CAGE_peak_1_at_OBFC1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr10	GH10I103905	103905129	103914106	1.77	[{'connected_gene': 'SLK', 'score': 17.12}, {'connected_gene': 'STN1', 'score': 7.17}, {'connected_gene': 'ENSG00000260461', 'score': 6.19}, {'connected_gene': 'GSTO2', 'score': 5.62}, {'connected_gene': 'SH3PXD2A', 'score': 4.74}, {'connected_gene': 'GSTO1', 'score': 3.03}, {'connected_gene': 'GC10M103885', 'score': 0.37}]
chr10	GH10I103922	103922932	103924122	0.69	[{'connected_gene': 'SLK', 'score': 6.77}, {'connected_gene': 'STN1', 'score': 0.44}, {'connected_gene': 'LOC102724351', 'score': 0.26}]
chr10	GH10I103925	103925723	103925872	0.2	[{'connected_gene': 'SLK', 'score': 5.94}, {'connected_gene': 'STN1', 'score': 0.44}, {'connected_gene': 'LOC102724351', 'score': 0.26}]
chr10	GH10I103926	103926103	103926252	0.2	[{'connected_gene': 'SLK', 'score': 6.78}, {'connected_gene': 'STN1', 'score': 0.44}, {'connected_gene': 'LOC102724351', 'score': 0.26}]
chr10	GH10I103941	103941372	103943237	0.31	[{'connected_gene': 'SLK', 'score': 7.82}, {'connected_gene': 'CALHM2', 'score': 5.46}, {'connected_gene': 'STN1', 'score': 0.34}, {'connected_gene': 'LOC102724351', 'score': 0.34}]
chr10	GH10I103899	103899443	103899592	0.4	[{'connected_gene': 'SLK', 'score': 11.66}, {'connected_gene': 'MIR936', 'score': 10.7}, {'connected_gene': 'GC10M103885', 'score': 0.44}, {'connected_gene': 'STN1', 'score': 0.37}]
chr10	GH10I103900	103899859	103901854	0.66	[{'connected_gene': 'SLK', 'score': 16.33}, {'connected_gene': 'MIR936', 'score': 10.7}, {'connected_gene': 'STN1', 'score': 5.06}, {'connected_gene': 'GC10M103885', 'score': 0.44}]
chr10	GH10I103737	103737957	103741667	0.97	[{'connected_gene': 'SH3PXD2A', 'score': 11.36}, {'connected_gene': 'STN1', 'score': 10.5}, {'connected_gene': 'GSTO1', 'score': 5.89}, {'connected_gene': 'GC10M103742', 'score': 0.77}, {'connected_gene': 'ENSG00000222503', 'score': 0.2}]
chr10	GH10I103848	103848984	103856580	2.67	[{'connected_gene': 'SH3PXD2A', 'score': 555.7}, {'connected_gene': 'ENSG00000260461', 'score': 5.63}, {'connected_gene': 'STN1', 'score': 5.6}, {'connected_gene': 'CFAP43', 'score': 4.67}, {'connected_gene': 'SH3PXD2A-AS1', 'score': 0.14}]
chr10	GH10I103578	103578375	103581708	1.09	[{'connected_gene': 'NEURL1', 'score': 16.18}, {'connected_gene': 'NEURL1-AS1', 'score': 15.1}, {'connected_gene': 'CALHM2', 'score': 4.88}, {'connected_gene': 'STN1', 'score': 4.69}, {'connected_gene': 'GC10P103582', 'score': 0.77}, {'connected_gene': 'ENSG00000226431', 'score': 0.29}]
chr10	GH10I103892	103892293	103897049	1.54	[{'connected_gene': 'STN1', 'score': 17.12}, {'connected_gene': 'SLK', 'score': 15.97}, {'connected_gene': 'SH3PXD2A', 'score': 11.45}, {'connected_gene': 'MIR936', 'score': 10.69}, {'connected_gene': 'COL17A1', 'score': 10.54}, {'connected_gene': 'GC10M103885', 'score': 0.77}]
chr10	GH10I103914	103914453	103920574	2.26	[{'connected_gene': 'STN1', 'score': 558.08}, {'connected_gene': 'SLK', 'score': 11.47}, {'connected_gene': 'SORCS3', 'score': 5.54}, {'connected_gene': 'GC10M103885', 'score': 0.31}]
chr10	GH10I103928	103928644	103929903	0.72	[{'connected_gene': 'STN1', 'score': 6.86}, {'connected_gene': 'SLK', 'score': 6.81}, {'connected_gene': 'GSTO2', 'score': 4.91}, {'connected_gene': 'LOC102724351', 'score': 0.28}]
chr10	GH10I103897	103897168	103897840	0.38	[{'connected_gene': 'STN1', 'score': 17.88}, {'connected_gene': 'SLK', 'score': 11.66}, {'connected_gene': 'MIR936', 'score': 10.69}, {'connected_gene': 'GC10M103885', 'score': 0.44}]
chr10	GH10I103884	103884743	103884932	0.85	[{'connected_gene': 'STN1', 'score': 16.08}, {'connected_gene': 'SH3PXD2A', 'score': 12.01}, {'connected_gene': 'MIR609', 'score': 9.93}, {'connected_gene': 'PIR55313', 'score': 0.77}, {'connected_gene': 'GC10M103884', 'score': 0.77}, {'connected_gene': 'GC10M103885', 'score': 0.44}]
chr10	GH10I103986	103986401	103986692	0.58	[{'connected_gene': 'STN1', 'score': 11.13}, {'connected_gene': 'COL17A1', 'score': 9.86}, {'connected_gene': 'GSTO1', 'score': 5.79}, {'connected_gene': 'RN7SL524P', 'score': 0.39}, {'connected_gene': 'SLK', 'score': 0.37}, {'connected_gene': 'MIR936', 'score': 0.21}]
chr10	GH10I103982	103982736	103984599	0.79	[{'connected_gene': 'STN1', 'score': 11.47}, {'connected_gene': 'COL17A1', 'score': 8.68}, {'connected_gene': 'RN7SL524P', 'score': 0.44}, {'connected_gene': 'SLK', 'score': 0.37}, {'connected_gene': 'MIR936', 'score': 0.21}]
chr10	GH10I103958	103958796	103959809	0.2	[{'connected_gene': 'STN1', 'score': 12.21}, {'connected_gene': 'SFR1', 'score': 10.94}, {'connected_gene': 'SLK', 'score': 7.14}, {'connected_gene': 'CALHM2', 'score': 4.68}, {'connected_gene': 'LOC102724351', 'score': 0.44}]
chr10	GH10I103920	103920643	103920697	0.4	[{'connected_gene': 'STN1', 'score': 0.77}, {'connected_gene': 'LOC102724351', 'score': 0.25}]
chr10	GH10I103931	103931094	103932514	0.54	[{'connected_gene': 'STN1', 'score': 0.39}, {'connected_gene': 'LOC102724351', 'score': 0.28}]
chr10	GH10I103921	103921759	103922200	1.44	[{'connected_gene': 'STN1', 'score': 0.77}, {'connected_gene': 'LOC102724351', 'score': 0.25}]
chr10	GH10I104109	104109362	104110946	1.45	[{'connected_gene': 'SFR1', 'score': 42.77}, {'connected_gene': 'COL17A1', 'score': 11.61}, {'connected_gene': 'MIR936', 'score': 11.17}, {'connected_gene': 'STN1', 'score': 10.59}, {'connected_gene': 'CFAP43', 'score': 8.04}, {'connected_gene': 'GSTO1', 'score': 6.52}, {'connected_gene': 'CFAP58', 'score': 5.41}, {'connected_gene': 'SLK', 'score': 1.47}]
chr10	GH10I103965	103965843	103970825	2	[{'connected_gene': 'LOC102724351', 'score': 550.77}, {'connected_gene': 'SLK', 'score': 550.77}, {'connected_gene': 'PDCD11', 'score': 20.71}, {'connected_gene': 'ENSG00000260461', 'score': 18.82}, {'connected_gene': 'TAF5', 'score': 15.88}, {'connected_gene': 'STN1', 'score': 11.29}, {'connected_gene': 'PCGF6', 'score': 10.19}, {'connected_gene': 'COL17A1', 'score': 9.81}, {'connected_gene': 'GC10P103974', 'score': 0.44}]
chr10	GH10I103744	103744462	103749621	1.04	[{'connected_gene': 'SH3PXD2A-AS1', 'score': 550.77}, {'connected_gene': 'SH3PXD2A', 'score': 11.38}, {'connected_gene': 'STN1', 'score': 10.5}, {'connected_gene': 'COL17A1', 'score': 9.35}, {'connected_gene': 'NT5C2', 'score': 4.72}, {'connected_gene': 'GSTO1', 'score': 4.63}, {'connected_gene': 'GSTO2', 'score': 4.55}]
chr10	GH10I103887	103887370	103891592	1.61	[{'connected_gene': 'GC10M103885', 'score': 550.77}, {'connected_gene': 'SLK', 'score': 17.77}, {'connected_gene': 'SH3PXD2A', 'score': 11.47}, {'connected_gene': 'MIR936', 'score': 10.68}, {'connected_gene': 'ENSG00000260461', 'score': 10.08}, {'connected_gene': 'STN1', 'score': 5.01}, {'connected_gene': 'COL17A1', 'score': 2.44}, {'connected_gene': 'SFR1', 'score': 2.24}, {'connected_gene': 'GSTO2', 'score': 2.21}, {'connected_gene': 'GSTO1', 'score': 1.33}, {'connected_gene': 'PIR55313', 'score': 0.44}, {'connected_gene': 'GC10M103884', 'score': 0.44}]
chr10	GH10I103742	103742968	103744260	0.46	[{'connected_gene': 'GC10M103742', 'score': 550.77}, {'connected_gene': 'SH3PXD2A', 'score': 11.37}, {'connected_gene': 'STN1', 'score': 10.5}, {'connected_gene': 'GSTO2', 'score': 4.51}, {'connected_gene': 'GSTO1', 'score': 4.49}, {'connected_gene': 'SH3PXD2A-AS1', 'score': 0.77}]
chr10	GH10I103869	103869557	103873902	1.01	[{'connected_gene': 'PIR55627', 'score': 550.77}, {'connected_gene': 'STN1', 'score': 11.78}, {'connected_gene': 'SH3PXD2A', 'score': 11.47}, {'connected_gene': 'SLK', 'score': 10.77}, {'connected_gene': 'MIR936', 'score': 10.6}, {'connected_gene': 'COL17A1', 'score': 6.44}, {'connected_gene': 'GSTO2', 'score': 4.47}, {'connected_gene': 'ENSG00000260461', 'score': 0.44}]
chr10	GH10I103878	103878502	103883866	0.66	[{'connected_gene': 'ENSG00000260461', 'score': 556.49}, {'connected_gene': 'PIR55313', 'score': 550.77}, {'connected_gene': 'GC10M103884', 'score': 550.77}, {'connected_gene': 'PIR46931', 'score': 550.77}, {'connected_gene': 'GC10M103883', 'score': 550.77}, {'connected_gene': 'STN1', 'score': 17.59}, {'connected_gene': 'SH3PXD2A', 'score': 16.65}, {'connected_gene': 'MIR936', 'score': 10.6}, {'connected_gene': 'MIR609', 'score': 9.93}]
chr10	GH10I103833	103833202	103841810	1.34	[{'connected_gene': 'ENSG00000260461', 'score': 40.56}, {'connected_gene': 'PDCD11', 'score': 33.65}, {'connected_gene': 'GSTO2', 'score': 4.83}, {'connected_gene': 'STN1', 'score': 4.62}, {'connected_gene': 'SLK', 'score': 4.46}, {'connected_gene': 'SH3PXD2A', 'score': 0.37}, {'connected_gene': 'SH3PXD2A-AS1', 'score': 0.16}]
chr10	GH10I103692	103691981	103693499	1.84	[{'connected_gene': 'ENSG00000260461', 'score': 31.35}, {'connected_gene': 'SFR1', 'score': 12.58}, {'connected_gene': 'SLK', 'score': 12.14}, {'connected_gene': 'PDCD11', 'score': 11.85}, {'connected_gene': 'CALHM2', 'score': 10.52}, {'connected_gene': 'PCGF6', 'score': 9.8}, {'connected_gene': 'STN1', 'score': 4.17}, {'connected_gene': 'AS3MT', 'score': 4.15}, {'connected_gene': 'ENSG00000222503', 'score': 0.37}, {'connected_gene': 'GC10M103742', 'score': 0.25}, {'connected_gene': 'SH3PXD2A', 'score': 0.1}]