PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000468592	[[172290726, 172290780], [172291592, 172291696], [172300032, 172300123], [172305190, 172305327], [172306388, 172306467], [172309633, 172309723], [172314480, 172314585], [172325397, 172325540], [172330375, 172330485], [172333369, 172333460], [172334496, 172334580], [172336547, 172336703], [172337483, 172338668]]	None
ENST00000539783	[[172290760, 172291213], [172291592, 172291696], [172300032, 172300123], [172305190, 172305327], [172306388, 172306467], [172309633, 172309723], [172314480, 172314585], [172314881, 172314987], [172325397, 172325540], [172334496, 172334580], [172336547, 172336703], [172337483, 172341558]]	[[172291087, 172291213], [172291592, 172291696], [172300032, 172300123], [172305190, 172305327], [172306388, 172306467], [172309633, 172309723], [172314480, 172314585], [172314881, 172314987], [172325397, 172325540], [172334496, 172334580], [172336547, 172336703], [172337483, 172337624]]
ENST00000375255	[[172290760, 172291213], [172291592, 172291696], [172300032, 172300123], [172305190, 172305327], [172306388, 172306467], [172309633, 172309723], [172314480, 172314585], [172314881, 172314987], [172325397, 172325540], [172330375, 172330485], [172333369, 172333460], [172334496, 172334580], [172336547, 172336703], [172337483, 172341562]]	[[172291087, 172291213], [172291592, 172291696], [172300032, 172300123], [172305190, 172305327], [172306388, 172306467], [172309633, 172309723], [172314480, 172314585], [172314881, 172314987], [172325397, 172325540], [172330375, 172330485], [172333369, 172333460], [172334496, 172334580], [172336547, 172336703], [172337483, 172337624]]
ENST00000495925	[[172291166, 172291213], [172300032, 172300123], [172305190, 172305327], [172306388, 172306435]]	None
ENST00000436317	[[172291173, 172291213], [172291592, 172291696], [172300032, 172300123], [172303895, 172304013], [172305190, 172305327], [172306388, 172306467], [172309633, 172309723], [172314480, 172314579]]	[[172291173, 172291213], [172291592, 172291696], [172300032, 172300123], [172303895, 172304013], [172305190, 172305222]]
ENST00000490217	[[172291211, 172291507], [172291592, 172291696], [172300032, 172300123], [172305190, 172305327], [172306388, 172306468]]	None
ENST00000480855	[[172299646, 172300123], [172305190, 172305327], [172306388, 172306585]]	None
ENST00000339506	[[172309633, 172309723], [172325397, 172325540], [172330375, 172330485], [172333369, 172333460], [172334496, 172334580], [172336547, 172336703], [172337483, 172337677]]	[[172309633, 172309723], [172325397, 172325540], [172330375, 172330485], [172333369, 172333460], [172334496, 172334580], [172336547, 172336703], [172337483, 172337624]]
ENST00000493106	[[172325486, 172325540], [172330375, 172330894]]	None
ENST00000431110	[[172329379, 172329465], [172330375, 172330485], [172333369, 172333460], [172334496, 172334580], [172336547, 172336703], [172337483, 172337789]]	[[172329379, 172329465], [172330375, 172330485], [172333369, 172333460], [172334496, 172334580], [172336547, 172336703], [172337483, 172337624]]
ENST00000498486	[[172336165, 172336703], [172337483, 172337642]]	None
NR_028482	[[172290760, 172291213], [172291592, 172291696], [172300032, 172300123], [172305190, 172305327], [172306388, 172306467], [172309633, 172309723], [172314480, 172314585], [172325397, 172325540], [172330375, 172330485], [172333369, 172333460], [172334496, 172334580], [172336547, 172336703], [172337483, 172341562]]	None
NM_001164821	[[172290760, 172291213], [172291592, 172291696], [172300032, 172300123], [172305190, 172305327], [172306388, 172306467], [172309633, 172309723], [172314480, 172314585], [172314881, 172314987], [172325397, 172325540], [172334496, 172334580], [172336547, 172336703], [172337483, 172341562]]	[[172291087, 172291213], [172291592, 172291696], [172300032, 172300123], [172305190, 172305327], [172306388, 172306467], [172309633, 172309723], [172314480, 172314585], [172314881, 172314987], [172325397, 172325540], [172334496, 172334580], [172336547, 172336703], [172337483, 172337624]]
NM_025000	[[172290760, 172291213], [172291592, 172291696], [172300032, 172300123], [172305190, 172305327], [172306388, 172306467], [172309633, 172309723], [172314480, 172314585], [172314881, 172314987], [172325397, 172325540], [172330375, 172330485], [172333369, 172333460], [172334496, 172334580], [172336547, 172336703], [172337483, 172341562]]	[[172291087, 172291213], [172291592, 172291696], [172300032, 172300123], [172305190, 172305327], [172306388, 172306467], [172309633, 172309723], [172314480, 172314585], [172314881, 172314987], [172325397, 172325540], [172330375, 172330485], [172333369, 172333460], [172334496, 172334580], [172336547, 172336703], [172337483, 172337624]]

Promoter

Chrom	Start	End	Description
chr2	172290707	172290764	CAGE_peak_1_at_DCAF17_5end
chr2	172290765	172290787	CAGE_peak_4_at_DCAF17_5end
chr2	172290817	172290845	CAGE_peak_2_at_DCAF17_5end
chr2	172309636	172309643	CAGE_peak_11_at_DCAF17_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr2	GH02I171158	171158132	171162490	2.25	[{'connected_gene': 'TLK1', 'score': 550.19}, {'connected_gene': 'GORASP2', 'score': 15.24}, {'connected_gene': 'DCAF17', 'score': 13.59}, {'connected_gene': 'HAT1', 'score': 11.7}, {'connected_gene': 'METAP1D', 'score': 10.24}, {'connected_gene': 'DAP3P2', 'score': 9.93}, {'connected_gene': 'GC02P171119', 'score': 0.26}, {'connected_gene': 'GC02P171227', 'score': 0.2}]
chr2	GH02I171921	171921334	171924718	2.07	[{'connected_gene': 'HAT1', 'score': 563.36}, {'connected_gene': 'LOC105373740', 'score': 550.77}, {'connected_gene': 'DAP3P2', 'score': 13.34}, {'connected_gene': 'DCAF17', 'score': 10.9}, {'connected_gene': 'SLC25A12', 'score': 10.58}, {'connected_gene': 'GC02M171942', 'score': 0.37}]
chr2	GH02I171430	171430548	171435764	2.35	[{'connected_gene': 'DCAF17', 'score': 577.18}, {'connected_gene': 'METTL8', 'score': 569.3}, {'connected_gene': 'DAP3P2', 'score': 33.87}, {'connected_gene': 'GORASP2', 'score': 20.84}, {'connected_gene': 'RPS15P4', 'score': 10.42}, {'connected_gene': 'CYBRD1', 'score': 7.54}, {'connected_gene': 'TLK1', 'score': 1.93}, {'connected_gene': 'GC02M171404', 'score': 0.31}]
chr2	GH02I172246	172246478	172255329	1.69	[{'connected_gene': 'DCAF17', 'score': 43.51}, {'connected_gene': 'ITGA6', 'score': 20.62}, {'connected_gene': 'ENSG00000226963', 'score': 11.26}, {'connected_gene': 'METAP1D', 'score': 10.28}, {'connected_gene': 'DAP3P2', 'score': 9.91}, {'connected_gene': 'ENSG00000232555', 'score': 0.21}, {'connected_gene': 'GC02M172117', 'score': 0.21}]
chr2	GH02I172223	172223059	172233200	1.21	[{'connected_gene': 'DCAF17', 'score': 23.82}, {'connected_gene': 'ITGA6', 'score': 5.13}, {'connected_gene': 'GC02M172117', 'score': 0.28}, {'connected_gene': 'ENSG00000232555', 'score': 0.17}]
chr2	GH02I171510	171510471	171510620	0.46	[{'connected_gene': 'DCAF17', 'score': 18.15}, {'connected_gene': 'GORASP2', 'score': 10.37}, {'connected_gene': 'RPS15P4', 'score': 0.44}, {'connected_gene': 'GC02P171494', 'score': 0.37}]
chr2	GH02I171244	171244099	171246180	1.45	[{'connected_gene': 'DCAF17', 'score': 17.03}, {'connected_gene': 'GORASP2', 'score': 12.38}, {'connected_gene': 'DAP3P2', 'score': 11.99}, {'connected_gene': 'METAP1D', 'score': 10.11}, {'connected_gene': 'METTL8', 'score': 5.22}, {'connected_gene': 'TLK1', 'score': 0.39}, {'connected_gene': 'GC02M171274', 'score': 0.31}, {'connected_gene': 'LOC105373737', 'score': 0.22}]
chr2	GH02I171408	171408833	171410894	0.79	[{'connected_gene': 'CYBRD1', 'score': 5.33}, {'connected_gene': 'GC02M171404', 'score': 0.77}, {'connected_gene': 'METTL8', 'score': 0.34}, {'connected_gene': 'DCAF17', 'score': 0.34}]
chr2	GH02I171412	171412201	171412400	0.2	[{'connected_gene': 'CYBRD1', 'score': 5.34}, {'connected_gene': 'GC02M171404', 'score': 0.44}, {'connected_gene': 'METTL8', 'score': 0.34}, {'connected_gene': 'DCAF17', 'score': 0.34}]
chr2	GH02I171415	171415656	171416840	1.14	[{'connected_gene': 'CYBRD1', 'score': 5.28}, {'connected_gene': 'GC02M171404', 'score': 0.39}, {'connected_gene': 'METTL8', 'score': 0.37}, {'connected_gene': 'DCAF17', 'score': 0.37}]
chr2	GH02I171482	171482167	171483660	0.49	[{'connected_gene': 'CYBRD1', 'score': 12.17}, {'connected_gene': 'METTL8', 'score': 12.07}, {'connected_gene': 'GC02M171472', 'score': 0.44}, {'connected_gene': 'DAP3P2', 'score': 0.44}, {'connected_gene': 'DCAF17', 'score': 0.25}]
chr2	GH02I170713	170713093	170717789	2.34	[{'connected_gene': 'SP5', 'score': 550.77}, {'connected_gene': 'LINC01124', 'score': 550.77}, {'connected_gene': 'LOC101926913', 'score': 14.21}, {'connected_gene': 'DCAF17', 'score': 13.94}, {'connected_gene': 'GAD1', 'score': 8.74}, {'connected_gene': 'EIF2S2P4', 'score': 0.28}]
chr2	GH02I172118	172118572	172119760	0.79	[{'connected_gene': 'DAP3P2', 'score': 12.67}, {'connected_gene': 'DCAF17', 'score': 10.16}, {'connected_gene': 'LOC105373741', 'score': 0.37}, {'connected_gene': 'DLX2-AS1', 'score': 0.37}, {'connected_gene': 'GC02M172117', 'score': 0.19}]
chr2	GH02I171490	171490414	171491209	0.31	[{'connected_gene': 'DAP3P2', 'score': 550.77}, {'connected_gene': 'CYBRD1', 'score': 21.61}, {'connected_gene': 'METTL8', 'score': 7.51}, {'connected_gene': 'GC02M171472', 'score': 0.39}, {'connected_gene': 'DCAF17', 'score': 0.22}]
chr2	GH02I170927	170927616	170931412	2.58	[{'connected_gene': 'GORASP2', 'score': 557.26}, {'connected_gene': 'GC02M170927', 'score': 550.77}, {'connected_gene': 'DAP3P2', 'score': 37.58}, {'connected_gene': 'RPS15P4', 'score': 20.44}, {'connected_gene': 'DCAF17', 'score': 10.37}, {'connected_gene': 'TLK1', 'score': 3.17}, {'connected_gene': 'GC02P170969', 'score': 0.28}]
chr2	GH02I170815	170815811	170815980	0.87	[{'connected_gene': 'GAD1', 'score': 23.19}, {'connected_gene': 'DAP3P2', 'score': 14.27}, {'connected_gene': 'RPS15P4', 'score': 11.91}, {'connected_gene': 'DCAF17', 'score': 10.36}, {'connected_gene': 'ENSG00000235934', 'score': 0.77}, {'connected_gene': 'GC02P170803', 'score': 0.39}]
chr2	GH02I171999	171999271	172001280	1.59	[{'connected_gene': 'METAP1D', 'score': 560.85}, {'connected_gene': 'SLC25A12', 'score': 559.49}, {'connected_gene': 'DCAF17', 'score': 25.5}, {'connected_gene': 'DAP3P2', 'score': 24.41}, {'connected_gene': 'RPS15P4', 'score': 11.92}, {'connected_gene': 'GC02P172074', 'score': 0.19}]
chr2	GH02I171686	171686851	171689362	2.08	[{'connected_gene': 'DYNC1I2', 'score': 550.77}, {'connected_gene': 'DAP3P2', 'score': 25.45}, {'connected_gene': 'RPS15P4', 'score': 10.33}, {'connected_gene': 'DCAF17', 'score': 10.03}, {'connected_gene': 'GORASP2', 'score': 9.9}, {'connected_gene': 'TLK1', 'score': 9.84}, {'connected_gene': 'HAT1', 'score': 5.41}, {'connected_gene': 'GC02P171811', 'score': 0.13}]
chr2	GH02I172092	172092917	172103444	3.39	[{'connected_gene': 'DLX2', 'score': 562.0}, {'connected_gene': 'DCAF17', 'score': 42.54}, {'connected_gene': 'DAP3P2', 'score': 38.33}, {'connected_gene': 'RPS15P4', 'score': 10.32}, {'connected_gene': 'METAP1D', 'score': 10.24}, {'connected_gene': 'HAT1', 'score': 9.98}, {'connected_gene': 'ITGA6', 'score': 9.94}, {'connected_gene': 'ENSG00000232788', 'score': 9.93}, {'connected_gene': 'DLX1', 'score': 7.9}, {'connected_gene': 'DYNC1I2', 'score': 1.64}, {'connected_gene': 'DLX2-AS1', 'score': 0.77}, {'connected_gene': 'GC02P172093', 'score': 0.77}]
chr2	GH02I170769	170769789	170772400	1.71	[{'connected_gene': 'LOC101926913', 'score': 550.77}, {'connected_gene': 'ENSG00000239467', 'score': 550.77}, {'connected_gene': 'ERICH2', 'score': 550.77}, {'connected_gene': 'DAP3P2', 'score': 14.27}, {'connected_gene': 'RPS15P4', 'score': 11.91}, {'connected_gene': 'DCAF17', 'score': 10.36}]
chr2	GH02I170820	170820251	170820400	0.52	[{'connected_gene': 'GC02M170820', 'score': 550.77}, {'connected_gene': 'DCAF17', 'score': 13.95}, {'connected_gene': 'GAD1', 'score': 13.72}, {'connected_gene': 'ENSG00000235934', 'score': 0.77}, {'connected_gene': 'GC02P170803', 'score': 0.37}]
chr2	GH02I171411	171411891	171412040	0.38	[{'connected_gene': 'GC02M171404', 'score': 0.44}, {'connected_gene': 'METTL8', 'score': 0.34}, {'connected_gene': 'DCAF17', 'score': 0.34}]
chr2	GH02I170816	170816113	170816220	0.8	[{'connected_gene': 'ENSG00000235934', 'score': 550.77}, {'connected_gene': 'DAP3P2', 'score': 14.27}, {'connected_gene': 'RPS15P4', 'score': 11.91}, {'connected_gene': 'DCAF17', 'score': 10.36}, {'connected_gene': 'GAD1', 'score': 0.77}, {'connected_gene': 'GC02P170803', 'score': 0.39}]