Visualization of regulatory element with DNMs in transcripts


Visualization of de novo variants in transcripts


Visualization of original de novo CNV set
   There is no corresponding data published yet, we will update it when such data available.
Transcripts
Transcript ID Transcript exon region Coding exon region
ENST00000338488 [[102584136, 102584689], [102587940, 102588114], [102590322, 102591275], [102594970, 102595100], [102595563, 102596341]] [[102590324, 102591275], [102594970, 102595100], [102595563, 102595814]]
ENST00000395097 [[102584136, 102584689], [102587940, 102588114], [102590322, 102591275], [102594970, 102595100], [102595563, 102595736], [102606930, 102607130], [102609718, 102609897], [102625901, 102627333]] [[102590324, 102591275], [102594970, 102595100], [102595563, 102595736], [102606930, 102607130], [102609718, 102609897], [102625901, 102626149]]
ENST00000330847 [[102589008, 102589083], [102590322, 102591275], [102594970, 102595100], [102595563, 102595736], [102606930, 102607130], [102609718, 102609897], [102625901, 102629173]] [[102589052, 102589083], [102590322, 102591275], [102594970, 102595100], [102595563, 102595736], [102606930, 102607130], [102609718, 102609897], [102625901, 102626149]]
NM_173199 [[102584136, 102584689], [102587940, 102588114], [102590322, 102591275], [102594970, 102595100], [102595563, 102596341]] [[102590324, 102591275], [102594970, 102595100], [102595563, 102595814]]
NM_006981 [[102584136, 102584689], [102587940, 102588114], [102590322, 102591275], [102594970, 102595100], [102595563, 102595736], [102606930, 102607130], [102609718, 102609897], [102625901, 102629173]] [[102590324, 102591275], [102594970, 102595100], [102595563, 102595736], [102606930, 102607130], [102609718, 102609897], [102625901, 102626149]]
NM_173200 [[102584136, 102584689], [102587940, 102588114], [102589011, 102589083], [102590322, 102591275], [102594970, 102595100], [102595563, 102595736], [102606930, 102607130], [102609718, 102609897], [102625901, 102629173]] [[102589052, 102589083], [102590322, 102591275], [102594970, 102595100], [102595563, 102595736], [102606930, 102607130], [102609718, 102609897], [102625901, 102626149]]
Promoter
Chrom Start End Description
chr9 102583633 102583644 CAGE_peak_8_at_NR4A3_5end
chr9 102584128 102584144 CAGE_peak_3_at_NR4A3_5end
chr9 102584159 102584174 CAGE_peak_2_at_NR4A3_5end
chr9 102584241 102584261 CAGE_peak_4_at_NR4A3_5end
chr9 102584262 102584276 CAGE_peak_1_at_NR4A3_5end
chr9 102584278 102584285 CAGE_peak_5_at_NR4A3_5end
chr9 102584329 102584341 CAGE_peak_6_at_NR4A3_5end
chr9 102590781 102590789 CAGE_peak_14_at_NR4A3_5end
Enhancer
Chrom Start End Genehancer ID Score Attributes
chr9 GH09I099430 99430124 99431795 0.8 [{'connected_gene': 'ALG2', 'score': 4.49}, {'connected_gene': 'NR4A3', 'score': 3.45}, {'connected_gene': 'NAMA', 'score': 0.23}, {'connected_gene': 'ENSG00000234860', 'score': 0.15}]
chr9 GH09I099597 99597204 99597356 0.22 [{'connected_gene': 'NR4A3', 'score': 3.94}, {'connected_gene': 'ALG2', 'score': 3.09}, {'connected_gene': 'ENSG00000234860', 'score': 0.2}, {'connected_gene': 'GC09M099818', 'score': 0.07}, {'connected_gene': 'LOC101928438', 'score': 0.07}]
chr9 GH09I099590 99590346 99591608 1.12 [{'connected_gene': 'NR4A3', 'score': 8.34}, {'connected_gene': 'TGFBR1', 'score': 1.21}, {'connected_gene': 'ENSG00000234860', 'score': 0.22}, {'connected_gene': 'GC09M099818', 'score': 0.07}, {'connected_gene': 'LOC101928438', 'score': 0.07}]
chr9 GH09I099515 99515220 99515368 0.49 [{'connected_gene': 'NR4A3', 'score': 6.74}, {'connected_gene': 'TGFBR1', 'score': 1.3}, {'connected_gene': 'ENSG00000234860', 'score': 0.37}, {'connected_gene': 'NAMA', 'score': 0.12}]
chr9 GH09I099432 99432944 99434783 1.38 [{'connected_gene': 'NR4A3', 'score': 5.49}, {'connected_gene': 'TGFBR1', 'score': 1.23}, {'connected_gene': 'NAMA', 'score': 0.22}, {'connected_gene': 'ENSG00000234860', 'score': 0.15}]
chr9 GH09I099516 99516776 99516928 0.79 [{'connected_gene': 'NR4A3', 'score': 5.64}, {'connected_gene': 'TGFBR1', 'score': 1.43}, {'connected_gene': 'ENSG00000234860', 'score': 0.39}, {'connected_gene': 'NAMA', 'score': 0.12}]
chr9 GH09I099748 99748308 99748687 0.32 [{'connected_gene': 'NR4A3', 'score': 6.42}, {'connected_gene': 'ERP44', 'score': 1.9}, {'connected_gene': 'GC09M099818', 'score': 0.19}, {'connected_gene': 'LOC101928438', 'score': 0.19}, {'connected_gene': 'ENSG00000234860', 'score': 0.08}]
chr9 GH09I099659 99659799 99660825 1.29 [{'connected_gene': 'NR4A3', 'score': 6.32}, {'connected_gene': 'ERP44', 'score': 1.43}, {'connected_gene': 'ENSG00000234860', 'score': 0.13}, {'connected_gene': 'GC09M099818', 'score': 0.1}, {'connected_gene': 'LOC101928438', 'score': 0.1}]
chr9 GH09I099628 99628978 99629159 0.44 [{'connected_gene': 'NR4A3', 'score': 4.52}, {'connected_gene': 'ERP44', 'score': 1.32}, {'connected_gene': 'ENSG00000234860', 'score': 0.15}, {'connected_gene': 'GC09M099818', 'score': 0.08}, {'connected_gene': 'LOC101928438', 'score': 0.08}]
chr9 GH09I099762 99762201 99763000 0.88 [{'connected_gene': 'NR4A3', 'score': 3.46}, {'connected_gene': 'ERP44', 'score': 1.96}, {'connected_gene': 'GC09M099818', 'score': 0.22}, {'connected_gene': 'LOC101928438', 'score': 0.22}, {'connected_gene': 'ENSG00000234860', 'score': 0.07}]
chr9 GH09I099750 99750630 99750837 0.22 [{'connected_gene': 'NR4A3', 'score': 2.45}, {'connected_gene': 'ERP44', 'score': 1.51}, {'connected_gene': 'GC09M099818', 'score': 0.2}, {'connected_gene': 'LOC101928438', 'score': 0.2}, {'connected_gene': 'ENSG00000234860', 'score': 0.08}]
chr9 GH09I099634 99634256 99634479 0.78 [{'connected_gene': 'NR4A3', 'score': 5.88}, {'connected_gene': 'ERP44', 'score': 1.45}, {'connected_gene': 'ENSG00000234860', 'score': 0.15}, {'connected_gene': 'GC09M099818', 'score': 0.09}, {'connected_gene': 'LOC101928438', 'score': 0.09}]
chr9 GH09I099629 99629281 99629621 0.41 [{'connected_gene': 'NR4A3', 'score': 5.7}, {'connected_gene': 'ERP44', 'score': 1.23}, {'connected_gene': 'ENSG00000234860', 'score': 0.15}, {'connected_gene': 'GC09M099818', 'score': 0.08}, {'connected_gene': 'LOC101928438', 'score': 0.08}]
chr9 GH09I099633 99633393 99633594 0.61 [{'connected_gene': 'NR4A3', 'score': 5.99}, {'connected_gene': 'ERP44', 'score': 1.76}, {'connected_gene': 'ENSG00000234860', 'score': 0.15}, {'connected_gene': 'GC09M099818', 'score': 0.09}, {'connected_gene': 'LOC101928438', 'score': 0.09}]
chr9 GH09I099683 99683026 99683248 0.29 [{'connected_gene': 'NR4A3', 'score': 6.18}, {'connected_gene': 'ERP44', 'score': 2.82}, {'connected_gene': 'GC09M099818', 'score': 0.12}, {'connected_gene': 'LOC101928438', 'score': 0.12}, {'connected_gene': 'ENSG00000234860', 'score': 0.1}]
chr9 GH09I099818 99818374 99825108 2.65 [{'connected_gene': 'NR4A3', 'score': 576.28}, {'connected_gene': 'GC09M099818', 'score': 550.77}, {'connected_gene': 'LOC101928438', 'score': 550.77}, {'connected_gene': 'MSANTD3', 'score': 10.27}, {'connected_gene': 'ERP44', 'score': 3.19}]
chr9 GH09I099851 99851120 99851770 0.6 [{'connected_gene': 'NR4A3', 'score': 10.74}, {'connected_gene': 'LOC101928438', 'score': 10.72}, {'connected_gene': 'GC09P099825', 'score': 0.31}, {'connected_gene': 'STX17-AS1', 'score': 0.22}]
chr9 GH09I099785 99783003 99783430 0.46 [{'connected_gene': 'NR4A3', 'score': 11.04}, {'connected_gene': 'LOC101928438', 'score': 11.04}, {'connected_gene': 'GC09M099818', 'score': 0.28}, {'connected_gene': 'ENSG00000234860', 'score': 0.07}]
chr9 GH09I099783 99783919 99784148 0.2 [{'connected_gene': 'NR4A3', 'score': 11.04}, {'connected_gene': 'LOC101928438', 'score': 11.04}, {'connected_gene': 'GC09M099818', 'score': 0.28}, {'connected_gene': 'ENSG00000234860', 'score': 0.07}]
chr9 GH09I099592 99592959 99593906 0.85 [{'connected_gene': 'NR4A3', 'score': 8.04}, {'connected_gene': 'ENSG00000234860', 'score': 0.21}, {'connected_gene': 'GC09M099818', 'score': 0.07}, {'connected_gene': 'LOC101928438', 'score': 0.07}]
chr9 GH09I099419 99419203 99419322 0.55 [{'connected_gene': 'NR4A3', 'score': 2.16}, {'connected_gene': 'NAMA', 'score': 0.26}, {'connected_gene': 'ENSG00000234860', 'score': 0.14}]
chr9 GH09I099513 99513622 99514462 0.97 [{'connected_gene': 'NR4A3', 'score': 6.31}, {'connected_gene': 'ENSG00000234860', 'score': 0.37}, {'connected_gene': 'NAMA', 'score': 0.12}]
chr9 GH09I099438 99438705 99438971 0.22 [{'connected_gene': 'NR4A3', 'score': 1.66}, {'connected_gene': 'NAMA', 'score': 0.21}, {'connected_gene': 'ENSG00000234860', 'score': 0.16}]
chr9 GH09I099579 99579827 99580270 0.55 [{'connected_gene': 'NR4A3', 'score': 4.73}, {'connected_gene': 'ENSG00000234860', 'score': 0.25}, {'connected_gene': 'GC09M099818', 'score': 0.07}]
chr9 GH09I099905 99905880 99908269 2.02 [{'connected_gene': 'STX17', 'score': 569.59}, {'connected_gene': 'STX17-AS1', 'score': 550.77}, {'connected_gene': 'NR4A3', 'score': 10.92}, {'connected_gene': 'LOC101928438', 'score': 10.92}, {'connected_gene': 'TEX10', 'score': 10.69}, {'connected_gene': 'INVS', 'score': 6.49}, {'connected_gene': 'ENSG00000254571', 'score': 0.34}]
chr9 GH09I100213 100213379 100214434 0.63 [{'connected_gene': 'INVS', 'score': 17.93}, {'connected_gene': 'STX17', 'score': 16.5}, {'connected_gene': 'RN7SL75P', 'score': 10.88}, {'connected_gene': 'ERP44', 'score': 10.88}, {'connected_gene': 'NR4A3', 'score': 10.16}, {'connected_gene': 'LOC101928438', 'score': 10.16}, {'connected_gene': 'MSANTD3', 'score': 8.86}, {'connected_gene': 'MSANTD3-TMEFF1', 'score': 8.86}, {'connected_gene': 'TMEFF1', 'score': 8.85}, {'connected_gene': 'GC09P100176', 'score': 0.28}, {'connected_gene': 'GC09P100306', 'score': 0.16}]
chr9 GH09I100209 100209739 100210788 0.94 [{'connected_gene': 'INVS', 'score': 17.83}, {'connected_gene': 'STX17', 'score': 15.41}, {'connected_gene': 'RN7SL75P', 'score': 11.4}, {'connected_gene': 'ERP44', 'score': 11.4}, {'connected_gene': 'NR4A3', 'score': 10.33}, {'connected_gene': 'LOC101928438', 'score': 10.32}, {'connected_gene': 'MSANTD3', 'score': 9.82}, {'connected_gene': 'MSANTD3-TMEFF1', 'score': 9.81}, {'connected_gene': 'TMEFF1', 'score': 9.81}, {'connected_gene': 'GC09P100176', 'score': 0.28}, {'connected_gene': 'GC09P100306', 'score': 0.15}]
chr9 GH09I100211 100211266 100212839 0.2 [{'connected_gene': 'INVS', 'score': 17.93}, {'connected_gene': 'STX17', 'score': 16.26}, {'connected_gene': 'RN7SL75P', 'score': 10.88}, {'connected_gene': 'ERP44', 'score': 10.88}, {'connected_gene': 'NR4A3', 'score': 10.16}, {'connected_gene': 'LOC101928438', 'score': 10.16}, {'connected_gene': 'MSANTD3', 'score': 8.86}, {'connected_gene': 'MSANTD3-TMEFF1', 'score': 8.86}, {'connected_gene': 'TMEFF1', 'score': 8.85}, {'connected_gene': 'GC09P100176', 'score': 0.28}, {'connected_gene': 'GC09P100306', 'score': 0.16}]
chr9 GH09I100214 100213217 100213311 0.2 [{'connected_gene': 'RN7SL75P', 'score': 10.88}, {'connected_gene': 'ERP44', 'score': 10.88}, {'connected_gene': 'INVS', 'score': 10.88}, {'connected_gene': 'NR4A3', 'score': 10.16}, {'connected_gene': 'LOC101928438', 'score': 10.16}, {'connected_gene': 'MSANTD3', 'score': 8.86}, {'connected_gene': 'MSANTD3-TMEFF1', 'score': 8.86}, {'connected_gene': 'TMEFF1', 'score': 8.85}, {'connected_gene': 'GC09P100176', 'score': 0.28}, {'connected_gene': 'GC09P100306', 'score': 0.16}]
chr9 GH09I099784 99784939 99785888 0.31 [{'connected_gene': 'LOC101928438', 'score': 11.06}, {'connected_gene': 'NR4A3', 'score': 11.04}, {'connected_gene': 'GC09M099818', 'score': 0.29}, {'connected_gene': 'ENSG00000234860', 'score': 0.07}]
chr9 GH09I099850 99850539 99850688 0.31 [{'connected_gene': 'GC09P099825', 'score': 0.34}, {'connected_gene': 'NR4A3', 'score': 0.31}, {'connected_gene': 'STX17-AS1', 'score': 0.22}]
chr9 GH09I099825 99825211 99825308 0.69 [{'connected_gene': 'GC09P099825', 'score': 550.77}, {'connected_gene': 'NR4A3', 'score': 0.77}]

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