PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000288368	[[68864352, 68864770], [68930080, 68930152], [68931783, 68931906], [68934270, 68934375], [68939456, 68939558], [68942731, 68942893], [68950393, 68950527], [68956721, 68956825], [68965331, 68965481], [68968064, 68968209], [68972913, 68973014], [68981267, 68981371], [68982069, 68982119], [68984729, 68984805], [68989631, 68989704], [68992677, 68992820], [68992980, 68993073], [68995474, 68995623], [68999958, 69000044], [69002813, 69002950], [69005839, 69005957], [69009251, 69009436], [69011916, 69012078], [69020343, 69020566], [69021650, 69021858], [69027987, 69028167], [69030784, 69030879], [69031666, 69031749], [69032430, 69032521], [69033155, 69033284], [69039612, 69039654], [69046293, 69046511], [69050649, 69050752], [69058443, 69058587], [69069556, 69069671], [69103956, 69104023], [69104569, 69104760], [69129850, 69129953], [69136793, 69136861], [69143567, 69149265]]	[[68864629, 68864770], [68930080, 68930152], [68931783, 68931906], [68934270, 68934375], [68939456, 68939558], [68942731, 68942893], [68950393, 68950527], [68956721, 68956825], [68965331, 68965481], [68968064, 68968209], [68972913, 68973014], [68981267, 68981371], [68982069, 68982119], [68984729, 68984805], [68989631, 68989704], [68992677, 68992820], [68992980, 68993073], [68995474, 68995623], [68999958, 69000044], [69002813, 69002950], [69005839, 69005957], [69009251, 69009436], [69011916, 69012078], [69020343, 69020566], [69021650, 69021858], [69027987, 69028167], [69030784, 69030879], [69031666, 69031749], [69032430, 69032521], [69033155, 69033284], [69039612, 69039654], [69046293, 69046511], [69050649, 69050752], [69058443, 69058587], [69069556, 69069671], [69103956, 69104023], [69104569, 69104760], [69129850, 69129953], [69136793, 69136861], [69143567, 69143613]]
ENST00000529398	[[68864602, 68864770], [68930080, 68930152], [68931783, 68931906], [68934270, 68934375], [68939456, 68939558], [68942731, 68942893], [68950393, 68950527], [68956721, 68956825], [68965331, 68965481], [68968064, 68968209], [68972913, 68973014], [68981267, 68981371], [68982069, 68982119], [68984729, 68984805], [68989631, 68989704], [68992677, 68992820], [68992980, 68993073], [68995474, 68995623], [68999958, 69000044], [69002813, 69002950], [69005839, 69005957], [69009251, 69009436], [69011916, 69012078], [69017372, 69018242]]	None
ENST00000517617	[[68864723, 68864770], [68934270, 68934375], [68939456, 68939558], [68942731, 68942893], [68950393, 68950527], [68956721, 68956825], [68965331, 68965481], [68968064, 68968209], [68972913, 68973014], [68981267, 68981371], [68982069, 68982119], [68984729, 68984805], [68989631, 68989704], [68992677, 68992820], [68992980, 68993073], [68995474, 68995623], [68999958, 69000044], [69002813, 69002950], [69005839, 69005957], [69009251, 69009436], [69011916, 69012078], [69020343, 69020566], [69021650, 69021858], [69023166, 69023324]]	None
ENST00000522247	[[69069609, 69069671], [69103956, 69104023], [69104569, 69104865]]	None
ENST00000520235	[[69069641, 69069671], [69103956, 69104023], [69104569, 69104760], [69129850, 69129953], [69132410, 69132585]]	None
NM_025170	[[68864349, 68864770], [68930080, 68930152], [68931783, 68931906], [68934270, 68934375], [68939456, 68939558], [68942731, 68942893], [68950393, 68950527], [68956721, 68956825], [68965331, 68965481], [68968064, 68968209], [68972913, 68973014], [68981267, 68981371], [68982069, 68982119], [68984729, 68984805], [68989631, 68989704], [68992677, 68992820], [68992980, 68993073], [68995474, 68995623], [68999958, 69000044], [69002813, 69002950], [69005839, 69005957], [69009251, 69009436], [69011916, 69012078], [69017372, 69018242]]	[[68864629, 68864770], [68930080, 68930152], [68931783, 68931906], [68934270, 68934375], [68939456, 68939558], [68942731, 68942893], [68950393, 68950527], [68956721, 68956825], [68965331, 68965481], [68968064, 68968209], [68972913, 68973014], [68981267, 68981371], [68982069, 68982119], [68984729, 68984805], [68989631, 68989704], [68992677, 68992820], [68992980, 68993073], [68995474, 68995623], [68999958, 69000044], [69002813, 69002950], [69005839, 69005957], [69009251, 69009436], [69011916, 69012078], [69017372, 69017597]]
NM_024870	[[68864349, 68864770], [68930080, 68930152], [68931783, 68931906], [68934270, 68934375], [68939456, 68939558], [68942731, 68942893], [68950393, 68950527], [68956721, 68956825], [68965331, 68965481], [68968064, 68968209], [68972913, 68973014], [68981267, 68981371], [68982069, 68982119], [68984729, 68984805], [68989631, 68989704], [68992677, 68992820], [68992980, 68993073], [68995474, 68995623], [68999958, 69000044], [69002813, 69002950], [69005839, 69005957], [69009251, 69009436], [69011916, 69012078], [69020343, 69020566], [69021650, 69021858], [69027987, 69028167], [69030784, 69030879], [69031666, 69031749], [69032430, 69032521], [69033155, 69033284], [69039612, 69039654], [69046293, 69046511], [69050649, 69050752], [69058443, 69058587], [69069556, 69069671], [69103956, 69104023], [69104569, 69104760], [69129850, 69129953], [69136793, 69136861], [69143567, 69149268]]	[[68864629, 68864770], [68930080, 68930152], [68931783, 68931906], [68934270, 68934375], [68939456, 68939558], [68942731, 68942893], [68950393, 68950527], [68956721, 68956825], [68965331, 68965481], [68968064, 68968209], [68972913, 68973014], [68981267, 68981371], [68982069, 68982119], [68984729, 68984805], [68989631, 68989704], [68992677, 68992820], [68992980, 68993073], [68995474, 68995623], [68999958, 69000044], [69002813, 69002950], [69005839, 69005957], [69009251, 69009436], [69011916, 69012078], [69020343, 69020566], [69021650, 69021858], [69027987, 69028167], [69030784, 69030879], [69031666, 69031749], [69032430, 69032521], [69033155, 69033284], [69039612, 69039654], [69046293, 69046511], [69050649, 69050752], [69058443, 69058587], [69069556, 69069671], [69103956, 69104023], [69104569, 69104760], [69129850, 69129953], [69136793, 69136861], [69143567, 69143613]]

Promoter

Chrom	Start	End	Description
chr8	68864009	68864037	CAGE_peak_6_at_PREX2_5end
chr8	68864042	68864056	CAGE_peak_11_at_PREX2_5end
chr8	68864183	68864197	CAGE_peak_7_at_PREX2_5end
chr8	68864231	68864243	CAGE_peak_8_at_PREX2_5end
chr8	68864263	68864328	CAGE_peak_2_at_PREX2_5end
chr8	68864330	68864361	CAGE_peak_3_at_PREX2_5end
chr8	68864466	68864478	CAGE_peak_10_at_PREX2_5end
chr8	68864487	68864512	CAGE_peak_4_at_PREX2_5end
chr8	68864580	68864596	CAGE_peak_5_at_PREX2_5end
chr8	68864598	68864664	CAGE_peak_1_at_PREX2_5end
chr8	68864670	68864683	CAGE_peak_14_at_PREX2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr8	GH08I067954	67954201	67954600	0.4	[{'connected_gene': 'PREX2', 'score': 16.66}, {'connected_gene': 'LOC105375888', 'score': 0.11}]
chr8	GH08I067993	67993738	67995622	0.31	[{'connected_gene': 'PREX2', 'score': 32.1}, {'connected_gene': 'LOC105375888', 'score': 0.15}]
chr8	GH08I067974	67974395	67975640	0.31	[{'connected_gene': 'PREX2', 'score': 27.97}, {'connected_gene': 'LOC105375888', 'score': 0.13}]
chr8	GH08I067959	67959997	67961067	0.57	[{'connected_gene': 'PREX2', 'score': 19.39}, {'connected_gene': 'LOC105375888', 'score': 0.12}]
chr8	GH08I068009	68009224	68009349	0.63	[{'connected_gene': 'PREX2', 'score': 13.13}, {'connected_gene': 'LOC105375888', 'score': 0.17}]
chr8	GH08I067977	67977843	67980473	0.31	[{'connected_gene': 'PREX2', 'score': 31.5}, {'connected_gene': 'LOC105375888', 'score': 0.13}]
chr8	GH08I067983	67983373	67986226	0.94	[{'connected_gene': 'PREX2', 'score': 22.21}, {'connected_gene': 'LOC105375888', 'score': 0.14}]
chr8	GH08I067957	67957360	67958415	0.31	[{'connected_gene': 'PREX2', 'score': 16.25}, {'connected_gene': 'LOC105375888', 'score': 0.12}]
chr8	GH08I067976	67976952	67977291	0.22	[{'connected_gene': 'PREX2', 'score': 31.22}, {'connected_gene': 'LOC105375888', 'score': 0.13}]
chr8	GH08I068022	68022266	68022415	0.46	[{'connected_gene': 'PREX2', 'score': 0.19}, {'connected_gene': 'LOC105375888', 'score': 0.19}]
chr8	GH08I067980	67980571	67980968	0.27	[{'connected_gene': 'PREX2', 'score': 11.2}, {'connected_gene': 'LOC105375888', 'score': 0.14}]
chr8	GH08I067963	67963506	67965374	0.83	[{'connected_gene': 'PREX2', 'score': 19.45}, {'connected_gene': 'ENSG00000254337', 'score': 5.49}, {'connected_gene': 'LOC105375888', 'score': 0.12}]
chr8	GH08I068014	68014195	68015894	0.57	[{'connected_gene': 'PREX2', 'score': 0.21}, {'connected_gene': 'LOC105375888', 'score': 0.18}]
chr8	GH08I067955	67954863	67955787	0.51	[{'connected_gene': 'PREX2', 'score': 0.77}, {'connected_gene': 'LOC105375888', 'score': 0.12}]
chr8	GH08I067967	67967712	67969415	1.09	[{'connected_gene': 'PREX2', 'score': 19.79}, {'connected_gene': 'LOC105375888', 'score': 0.13}]
chr8	GH08I067951	67951258	67953806	2.04	[{'connected_gene': 'PREX2', 'score': 564.55}, {'connected_gene': 'LOC100288001', 'score': 14.05}, {'connected_gene': 'ENSG00000271966', 'score': 11.32}, {'connected_gene': 'CSPP1', 'score': 10.6}, {'connected_gene': 'LOC105375888', 'score': 0.11}]
chr8	GH08I067950	67950646	67950795	0.31	[{'connected_gene': 'PREX2', 'score': 550.77}, {'connected_gene': 'PIR43650', 'score': 0.31}]
chr8	GH08I068165	68165486	68165635	0.31	[{'connected_gene': 'C8orf34-AS1', 'score': 6.94}, {'connected_gene': 'GC08P068163', 'score': 0.77}, {'connected_gene': 'ENSG00000254051', 'score': 0.39}, {'connected_gene': 'PREX2', 'score': 0.08}]
chr8	GH08I068229	68229066	68230818	0.51	[{'connected_gene': 'C8orf34', 'score': 10.46}, {'connected_gene': 'C8orf34-AS1', 'score': 10.46}, {'connected_gene': 'GC08P068234', 'score': 0.77}, {'connected_gene': 'ENSG00000252210', 'score': 0.44}, {'connected_gene': 'PREX2', 'score': 0.06}]
chr8	GH08I068182	68182119	68182310	0.48	[{'connected_gene': 'C8orf34', 'score': 10.31}, {'connected_gene': 'C8orf34-AS1', 'score': 10.31}, {'connected_gene': 'ENSG00000254051', 'score': 0.44}, {'connected_gene': 'ENSG00000252210', 'score': 0.26}, {'connected_gene': 'PREX2', 'score': 0.07}]
chr8	GH08I068071	68071146	68071295	0.72	[{'connected_gene': 'LOC105375888', 'score': 7.08}, {'connected_gene': 'PREX2', 'score': 0.13}]
chr8	GH08I068201	68201726	68201875	0.2	[{'connected_gene': 'ENSG00000252210', 'score': 0.34}, {'connected_gene': 'ENSG00000254051', 'score': 0.31}, {'connected_gene': 'PREX2', 'score': 0.07}]