PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000340487	[[28092337, 28092455], [28093190, 28093608], [28094560, 28094699], [28097207, 28097860]]	[[28093221, 28093608], [28094560, 28094699], [28097207, 28097728]]
NM_001320558	[[28092333, 28092455], [28093190, 28093608], [28094560, 28095350]]	[[28093221, 28093608], [28094560, 28094719]]
NM_001320556	[[28092333, 28092455], [28093190, 28093521], [28094560, 28094699], [28097207, 28097864]]	[[28093221, 28093521], [28094560, 28094699], [28097207, 28097728]]
NM_025231	[[28092333, 28092455], [28093190, 28093608], [28094560, 28094699], [28097207, 28097864]]	[[28093221, 28093608], [28094560, 28094699], [28097207, 28097728]]
NM_001320557	[[28092333, 28092455], [28093190, 28093608], [28094560, 28094699], [28097149, 28097864]]	[[28093221, 28093608], [28094560, 28094699], [28097149, 28097211]]
NM_001320555	[[28092333, 28092455], [28093140, 28093608], [28094560, 28094699], [28097207, 28097864]]	[[28093221, 28093608], [28094560, 28094699], [28097207, 28097728]]

Promoter

Chrom	Start	End	Description
chr6	28092375	28092412	CAGE_peak_1_at_ZSCAN16_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr6	GH06I028398	28398085	28400600	1.62	[{'connected_gene': 'ZSCAN12', 'score': 580.9}, {'connected_gene': 'LOC105374998', 'score': 550.77}, {'connected_gene': 'ZKSCAN3', 'score': 60.54}, {'connected_gene': 'ZNF603P', 'score': 55.67}, {'connected_gene': 'ZKSCAN8', 'score': 39.1}, {'connected_gene': 'ZKSCAN4', 'score': 37.76}, {'connected_gene': 'ZSCAN23', 'score': 23.84}, {'connected_gene': 'ZSCAN31', 'score': 23.67}, {'connected_gene': 'ZSCAN9', 'score': 23.11}, {'connected_gene': 'TRIM27', 'score': 21.3}, {'connected_gene': 'PGBD1', 'score': 13.82}, {'connected_gene': 'ZSCAN26', 'score': 13.35}, {'connected_gene': 'COX11P1', 'score': 10.55}, {'connected_gene': 'OR2E1P', 'score': 10.52}, {'connected_gene': 'GPX5', 'score': 9.66}, {'connected_gene': 'ZSCAN16', 'score': 9.64}, {'connected_gene': 'GPX6', 'score': 9.12}]
chr6	GH06I028123	28123836	28126132	2.18	[{'connected_gene': 'ZSCAN16', 'score': 550.77}, {'connected_gene': 'ZNF603P', 'score': 35.67}, {'connected_gene': 'ZNF602P', 'score': 28.81}, {'connected_gene': 'ZNF192P1', 'score': 8.95}, {'connected_gene': 'ZKSCAN8', 'score': 0.39}, {'connected_gene': 'ZSCAN16-AS1', 'score': 0.39}]
chr6	GH06I028215	28215110	28216591	0.65	[{'connected_gene': 'ZKSCAN3', 'score': 27.51}, {'connected_gene': 'ZKSCAN8', 'score': 26.53}, {'connected_gene': 'ZKSCAN4', 'score': 22.87}, {'connected_gene': 'ZSCAN12', 'score': 19.92}, {'connected_gene': 'ZNF603P', 'score': 15.99}, {'connected_gene': 'NKAPL', 'score': 11.42}, {'connected_gene': 'PGBD1', 'score': 10.92}, {'connected_gene': 'ZSCAN31', 'score': 10.81}, {'connected_gene': 'ZSCAN9', 'score': 10.74}, {'connected_gene': 'ZSCAN16', 'score': 10.49}, {'connected_gene': 'ZNF165', 'score': 9.87}, {'connected_gene': 'ZSCAN26', 'score': 3.8}, {'connected_gene': 'PIR37135', 'score': 0.77}, {'connected_gene': 'TOB2P1', 'score': 0.77}, {'connected_gene': 'TRS-GCT5-1', 'score': 0.77}]
chr6	GH06I028133	28133288	28133491	0.65	[{'connected_gene': 'ZKSCAN3', 'score': 10.35}, {'connected_gene': 'ZSCAN31', 'score': 10.34}, {'connected_gene': 'ZNF165', 'score': 10.09}, {'connected_gene': 'OR2B2', 'score': 2.73}, {'connected_gene': 'ZSCAN26', 'score': 2.26}, {'connected_gene': 'ZSCAN16', 'score': 1.56}, {'connected_gene': 'ZKSCAN4', 'score': 1.54}, {'connected_gene': 'ZSCAN16-AS1', 'score': 0.77}, {'connected_gene': 'ZKSCAN8', 'score': 0.77}]
chr6	GH06I028131	28131727	28131821	0.45	[{'connected_gene': 'ZKSCAN3', 'score': 10.35}, {'connected_gene': 'ZSCAN31', 'score': 10.34}, {'connected_gene': 'ZNF165', 'score': 10.09}, {'connected_gene': 'ZSCAN16', 'score': 1.85}, {'connected_gene': 'ZSCAN26', 'score': 1.77}, {'connected_gene': 'OR2B2', 'score': 1.72}, {'connected_gene': 'OR2B6', 'score': 1.59}, {'connected_gene': 'ZKSCAN8', 'score': 0.77}, {'connected_gene': 'ZSCAN16-AS1', 'score': 0.44}]
chr6	GH06I028136	28134123	28134272	0.94	[{'connected_gene': 'ZKSCAN3', 'score': 10.35}, {'connected_gene': 'ZSCAN31', 'score': 10.34}, {'connected_gene': 'ZNF165', 'score': 10.09}, {'connected_gene': 'ZKSCAN8', 'score': 0.77}, {'connected_gene': 'ZSCAN16-AS1', 'score': 0.77}, {'connected_gene': 'ZSCAN16', 'score': 0.44}]
chr6	GH06I028211	28211456	28213612	1.31	[{'connected_gene': 'ZSCAN9', 'score': 574.47}, {'connected_gene': 'GC06P028271', 'score': 550.77}, {'connected_gene': 'TRS-GCT5-1', 'score': 550.77}, {'connected_gene': 'ZKSCAN8', 'score': 64.26}, {'connected_gene': 'ZNF603P', 'score': 63.2}, {'connected_gene': 'ZSCAN12', 'score': 55.38}, {'connected_gene': 'ZKSCAN3', 'score': 50.78}, {'connected_gene': 'PGBD1', 'score': 47.16}, {'connected_gene': 'ZSCAN23', 'score': 46.2}, {'connected_gene': 'ZSCAN31', 'score': 42.15}, {'connected_gene': 'ZKSCAN4', 'score': 30.31}, {'connected_gene': 'ZSCAN26', 'score': 26.98}, {'connected_gene': 'ENSG00000261839', 'score': 25.51}, {'connected_gene': 'NKAPL', 'score': 15.53}, {'connected_gene': 'ZBED9', 'score': 14.14}, {'connected_gene': 'ZNF391', 'score': 13.43}, {'connected_gene': 'TRIM27', 'score': 13.3}, {'connected_gene': 'ENSG00000271755', 'score': 11.65}, {'connected_gene': 'ZNF192P1', 'score': 11.36}, {'connected_gene': 'ZNF204P', 'score': 11.07}, {'connected_gene': 'ZSCAN16', 'score': 10.5}, {'connected_gene': 'ZNF165', 'score': 9.87}, {'connected_gene': 'ZNF192P2', 'score': 0.34}]
chr6	GH06I028161	28161201	28162211	1.47	[{'connected_gene': 'ZNF192P1', 'score': 550.77}, {'connected_gene': 'ZNF603P', 'score': 71.85}, {'connected_gene': 'ZNF602P', 'score': 28.44}, {'connected_gene': 'ZSCAN16', 'score': 10.71}, {'connected_gene': 'ZKSCAN4', 'score': 10.22}, {'connected_gene': 'NKAPL', 'score': 10.22}, {'connected_gene': 'ZSCAN12', 'score': 10.06}, {'connected_gene': 'ZKSCAN3', 'score': 9.84}, {'connected_gene': 'ZSCAN31', 'score': 9.84}, {'connected_gene': 'ZNF165', 'score': 9.79}, {'connected_gene': 'OR2B7P', 'score': 8.76}, {'connected_gene': 'GC06P028276', 'score': 0.77}, {'connected_gene': 'GC06P028273', 'score': 0.77}]
chr6	GH06I028128	28128132	28129468	0.31	[{'connected_gene': 'ZNF603P', 'score': 54.5}, {'connected_gene': 'ZSCAN16', 'score': 0.77}, {'connected_gene': 'ZKSCAN8', 'score': 0.44}, {'connected_gene': 'ZSCAN16-AS1', 'score': 0.44}]
chr6	GH06I028137	28134401	28134600	0.87	[{'connected_gene': 'ZNF603P', 'score': 17.7}, {'connected_gene': 'ZKSCAN3', 'score': 10.35}, {'connected_gene': 'ZSCAN31', 'score': 10.34}, {'connected_gene': 'ZNF165', 'score': 10.09}, {'connected_gene': 'ZKSCAN8', 'score': 0.77}, {'connected_gene': 'ZSCAN16-AS1', 'score': 0.77}, {'connected_gene': 'ZSCAN16', 'score': 0.44}]
chr6	GH06I028104	28104019	28105800	1.61	[{'connected_gene': 'ZNF603P', 'score': 28.08}, {'connected_gene': 'ZNF165', 'score': 14.08}, {'connected_gene': 'ZKSCAN8', 'score': 12.03}, {'connected_gene': 'ZKSCAN3', 'score': 11.52}, {'connected_gene': 'ZKSCAN4', 'score': 11.14}, {'connected_gene': 'ZSCAN12', 'score': 9.81}, {'connected_gene': 'TRIM27', 'score': 9.75}, {'connected_gene': 'ZNF192P1', 'score': 8.9}, {'connected_gene': 'HIST1H2AK', 'score': 3.43}, {'connected_gene': 'HIST1H4K', 'score': 2.38}, {'connected_gene': 'ZSCAN16', 'score': 2.0}, {'connected_gene': 'ZNF601P', 'score': 0.44}, {'connected_gene': 'ZNF602P', 'score': 0.39}]
chr6	GH06I028341	28341118	28342153	0.2	[{'connected_gene': 'ZNF603P', 'score': 21.56}, {'connected_gene': 'ZSCAN23', 'score': 16.57}, {'connected_gene': 'ZSCAN31', 'score': 14.24}, {'connected_gene': 'ZKSCAN4', 'score': 10.55}, {'connected_gene': 'NKAPL', 'score': 10.55}, {'connected_gene': 'ZSCAN16', 'score': 10.22}, {'connected_gene': 'TRIM27', 'score': 4.2}, {'connected_gene': 'ZKSCAN3', 'score': 0.44}, {'connected_gene': 'ENSG00000270326', 'score': 0.34}]
chr6	GH06I028382	28382453	28384345	1.24	[{'connected_gene': 'ZKSCAN4', 'score': 30.42}, {'connected_gene': 'ZKSCAN3', 'score': 28.92}, {'connected_gene': 'ZNF603P', 'score': 25.44}, {'connected_gene': 'ZSCAN31', 'score': 17.46}, {'connected_gene': 'ZSCAN9', 'score': 12.7}, {'connected_gene': 'ZKSCAN8', 'score': 11.83}, {'connected_gene': 'ZSCAN12', 'score': 11.11}, {'connected_gene': 'NKAPL', 'score': 10.68}, {'connected_gene': 'ZSCAN16', 'score': 10.18}, {'connected_gene': 'ZNF165', 'score': 9.27}]
chr6	GH06I028251	28251000	28253113	2.06	[{'connected_gene': 'ZKSCAN4', 'score': 570.18}, {'connected_gene': 'ZNF603P', 'score': 51.02}, {'connected_gene': 'ZKSCAN3', 'score': 25.33}, {'connected_gene': 'ZSCAN9', 'score': 24.37}, {'connected_gene': 'ZKSCAN8', 'score': 22.34}, {'connected_gene': 'ZSCAN12', 'score': 20.76}, {'connected_gene': 'PGBD1', 'score': 11.3}, {'connected_gene': 'ZSCAN31', 'score': 10.8}, {'connected_gene': 'ZSCAN16', 'score': 10.03}, {'connected_gene': 'ZNF391', 'score': 4.79}, {'connected_gene': 'TOB2P1', 'score': 0.29}]
chr6	GH06I028220	28220286	28221102	1.09	[{'connected_gene': 'TOB2P1', 'score': 550.77}, {'connected_gene': 'ZKSCAN4', 'score': 22.46}, {'connected_gene': 'ZKSCAN3', 'score': 22.28}, {'connected_gene': 'ZNF603P', 'score': 20.85}, {'connected_gene': 'NKAPL', 'score': 11.43}, {'connected_gene': 'ZKSCAN8', 'score': 11.4}, {'connected_gene': 'PGBD1', 'score': 10.92}, {'connected_gene': 'ZSCAN31', 'score': 10.81}, {'connected_gene': 'ZSCAN12', 'score': 10.54}, {'connected_gene': 'ZSCAN16', 'score': 10.49}, {'connected_gene': 'ZNF165', 'score': 9.87}, {'connected_gene': 'TRIM27', 'score': 9.75}, {'connected_gene': 'ZSCAN9', 'score': 1.85}]
chr6	GH06I028090	28090801	28091201	0.61	[{'connected_gene': 'ZSCAN12P1', 'score': 550.77}, {'connected_gene': 'PIR35548', 'score': 550.77}, {'connected_gene': 'ZNF602P', 'score': 28.72}, {'connected_gene': 'ZSCAN16', 'score': 11.13}, {'connected_gene': 'ZNF603P', 'score': 10.8}]
chr6	GH06I028134	28134801	28135003	1.01	[{'connected_gene': 'ENSG00000261839', 'score': 550.77}, {'connected_gene': 'ZKSCAN8', 'score': 550.77}, {'connected_gene': 'ZKSCAN3', 'score': 10.35}, {'connected_gene': 'ZSCAN31', 'score': 10.34}, {'connected_gene': 'ZNF165', 'score': 10.09}, {'connected_gene': 'ZSCAN16', 'score': 2.61}, {'connected_gene': 'ZSCAN16-AS1', 'score': 0.77}]
chr6	GH06I028217	28217891	28219823	1.47	[{'connected_gene': 'PIR37135', 'score': 550.77}, {'connected_gene': 'GC06M028218', 'score': 550.77}, {'connected_gene': 'GC06M028219', 'score': 550.77}, {'connected_gene': 'PIR47699', 'score': 550.77}, {'connected_gene': 'TOB2P1', 'score': 550.77}, {'connected_gene': 'ZNF603P', 'score': 61.6}, {'connected_gene': 'ZKSCAN4', 'score': 11.42}, {'connected_gene': 'NKAPL', 'score': 11.42}, {'connected_gene': 'ZKSCAN8', 'score': 11.4}, {'connected_gene': 'PGBD1', 'score': 10.92}, {'connected_gene': 'ZSCAN31', 'score': 10.81}, {'connected_gene': 'ZKSCAN3', 'score': 10.81}, {'connected_gene': 'ZSCAN16', 'score': 10.49}, {'connected_gene': 'ZSCAN12', 'score': 9.97}, {'connected_gene': 'ZNF165', 'score': 9.87}, {'connected_gene': 'ZSCAN9', 'score': 0.44}]