PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000464957	[[1260135, 1260482], [1262620, 1263374]]	None
ENST00000343938	[[1260146, 1260482], [1262215, 1262412], [1262620, 1264277]]	[[1262290, 1262412], [1262620, 1263143]]
ENST00000488011	[[1260620, 1260975], [1262215, 1262412], [1262620, 1262851]]	[[1262290, 1262412], [1262620, 1262851]]
NM_001029885	[[1260142, 1260482], [1262215, 1262412], [1262620, 1264276]]	[[1262290, 1262412], [1262620, 1263143]]

Promoter

Chrom	Start	End	Description
chr1	1260169	1260242	CAGE_peak_1_at_GLTPD1_5end
chr1	1260247	1260270	CAGE_peak_3_at_GLTPD1_5end
chr1	1260284	1260304	CAGE_peak_2_at_GLTPD1_5end
chr1	1260598	1260646	CAGE_peak_4_at_GLTPD1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I001323	1323800	1326378	1.97	[{'connected_gene': 'INTS11', 'score': 550.77}, {'connected_gene': 'CPTP', 'score': 550.77}, {'connected_gene': 'ANKRD65', 'score': 17.36}, {'connected_gene': 'SCNN1D', 'score': 7.78}, {'connected_gene': 'MRPL20', 'score': 7.47}, {'connected_gene': 'PIR50275', 'score': 0.77}]
chr1	GH01I001019	1019001	1022441	2.49	[{'connected_gene': 'AGRN', 'score': 565.92}, {'connected_gene': 'ENSG00000272512', 'score': 20.53}, {'connected_gene': 'PLEKHN1', 'score': 5.59}, {'connected_gene': 'C1orf159', 'score': 2.37}, {'connected_gene': 'UBE2J2', 'score': 2.01}, {'connected_gene': 'DVL1', 'score': 1.99}, {'connected_gene': 'CPTP', 'score': 1.95}, {'connected_gene': 'ISG15', 'score': 1.8}, {'connected_gene': 'PUSL1', 'score': 1.69}, {'connected_gene': 'NOC2L', 'score': 1.67}, {'connected_gene': 'AURKAIP1', 'score': 1.58}, {'connected_gene': 'INTS11', 'score': 1.5}, {'connected_gene': 'ATAD3A', 'score': 1.34}, {'connected_gene': 'PIR57007', 'score': 0.34}]
chr1	GH01I001235	1235587	1243534	1.61	[{'connected_gene': 'B3GALT6', 'score': 26.04}, {'connected_gene': 'ANKRD65', 'score': 11.65}, {'connected_gene': 'ATAD3B', 'score': 9.68}, {'connected_gene': 'SDF4', 'score': 8.97}, {'connected_gene': 'AURKAIP1', 'score': 5.44}, {'connected_gene': 'ENSG00000237094', 'score': 5.07}, {'connected_gene': 'CPTP', 'score': 5.04}, {'connected_gene': 'CDK11B', 'score': 4.48}, {'connected_gene': 'PLEKHN1', 'score': 3.09}, {'connected_gene': 'PIR44892', 'score': 0.77}, {'connected_gene': 'C1QTNF12', 'score': 0.44}, {'connected_gene': 'GC01M001138', 'score': 0.34}]
chr1	GH01I001326	1326819	1326878	0.5	[{'connected_gene': 'GC01P001332', 'score': 550.77}, {'connected_gene': 'CPTP', 'score': 550.77}, {'connected_gene': 'PIR50275', 'score': 550.77}, {'connected_gene': 'PIR42896', 'score': 550.77}]