PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000314011	[[23685940, 23689714], [23693534, 23693661], [23694465, 23694558], [23695858, 23695935]]	[[23688461, 23689714], [23693534, 23693661], [23694465, 23694498]]
ENST00000374608	[[23686467, 23689714], [23693534, 23693661], [23694465, 23694879]]	[[23688461, 23689714], [23693534, 23693661], [23694465, 23694498]]
NM_030634	[[23685940, 23689714], [23693534, 23693661], [23694465, 23694879]]	[[23688461, 23689714], [23693534, 23693661], [23694465, 23694498]]
NM_001077195	[[23685940, 23689714], [23693534, 23693661], [23694465, 23694558], [23695858, 23696357]]	[[23688461, 23689714], [23693534, 23693661], [23694465, 23694498]]

Promoter

Chrom	Start	End	Description
chr1	23694532	23694549	CAGE_peak_8_at_ZNF436_5end
chr1	23694556	23694584	CAGE_peak_6_at_ZNF436_5end
chr1	23694697	23694756	CAGE_peak_3_at_ZNF436_5end
chr1	23694794	23694863	CAGE_peak_1_at_ZNF436_5end
chr1	23696308	23696339	CAGE_peak_2_at_ZNF436_5end
chr1	23696348	23696363	CAGE_peak_4_at_ZNF436_5end
chr1	23696448	23696453	CAGE_peak_5_at_ZNF436_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I023380	23380991	23382139	0.79	[{'connected_gene': 'ZNF436', 'score': 30.44}, {'connected_gene': 'ENSG00000271420', 'score': 0.77}, {'connected_gene': 'GC01M023400', 'score': 0.34}, {'connected_gene': 'TCEA3', 'score': 0.26}]
chr1	GH01I023262	23262663	23264642	0.46	[{'connected_gene': 'ZNF436', 'score': 13.31}, {'connected_gene': 'LACTBL1', 'score': 5.16}, {'connected_gene': 'PNRC2', 'score': 5.03}, {'connected_gene': 'GC01P023265', 'score': 0.77}, {'connected_gene': 'GC01M023246', 'score': 0.39}]
chr1	GH01I023512	23512826	23513138	0.33	[{'connected_gene': 'ZNF436', 'score': 19.63}, {'connected_gene': 'ID3', 'score': 11.02}, {'connected_gene': 'ENSG00000201405', 'score': 10.58}, {'connected_gene': 'ZNF436-AS1', 'score': 10.58}, {'connected_gene': 'HNRNPR', 'score': 2.22}, {'connected_gene': 'PIR36355', 'score': 0.77}, {'connected_gene': 'LOC101928163', 'score': 0.44}, {'connected_gene': 'E2F2', 'score': 0.37}]
chr1	GH01I023366	23366188	23372752	2.32	[{'connected_gene': 'ZNF436', 'score': 588.19}, {'connected_gene': 'ZNF436-AS1', 'score': 560.02}, {'connected_gene': 'ENSG00000201405', 'score': 550.77}, {'connected_gene': 'GC01P023371', 'score': 550.77}, {'connected_gene': 'KDM1A', 'score': 30.79}, {'connected_gene': 'SRSF10', 'score': 29.99}, {'connected_gene': 'LINC01355', 'score': 24.88}, {'connected_gene': 'ELOA', 'score': 20.86}, {'connected_gene': 'ZBTB40', 'score': 15.75}, {'connected_gene': 'RPL11', 'score': 13.66}, {'connected_gene': 'PNRC2', 'score': 11.7}, {'connected_gene': 'HNRNPR', 'score': 10.78}, {'connected_gene': 'TCEA3', 'score': 9.07}, {'connected_gene': 'GC01P023366', 'score': 0.77}, {'connected_gene': 'GC01P023364', 'score': 0.44}]
chr1	GH01I024266	24266175	24267802	0.97	[{'connected_gene': 'ZNF436', 'score': 13.31}, {'connected_gene': 'LOC105376871', 'score': 11.36}, {'connected_gene': 'GRHL3', 'score': 11.36}, {'connected_gene': 'SRRM1', 'score': 10.69}, {'connected_gene': 'HNRNPR', 'score': 9.9}, {'connected_gene': 'PIR35234', 'score': 0.39}, {'connected_gene': 'GC01M024359', 'score': 0.39}, {'connected_gene': 'GC01P024305', 'score': 0.28}]
chr1	GH01I023060	23060986	23061301	0.22	[{'connected_gene': 'LUZP1', 'score': 11.08}, {'connected_gene': 'LACTBL1', 'score': 10.07}, {'connected_gene': 'ZNF436', 'score': 1.25}, {'connected_gene': 'MIR4419A', 'score': 0.77}, {'connected_gene': 'GC01M023078', 'score': 0.37}, {'connected_gene': 'ENSG00000240553', 'score': 0.31}, {'connected_gene': 'KDM1A', 'score': 0.26}]
chr1	GH01I023420	23420649	23425746	2.14	[{'connected_gene': 'TCEA3', 'score': 568.11}, {'connected_gene': 'ASAP3', 'score': 43.18}, {'connected_gene': 'ZNF436-AS1', 'score': 31.48}, {'connected_gene': 'ZNF436', 'score': 10.81}, {'connected_gene': 'ENSG00000201405', 'score': 10.81}, {'connected_gene': 'LINC01355', 'score': 9.85}, {'connected_gene': 'ENSG00000232482', 'score': 0.39}]
chr1	GH01I023393	23393384	23396335	1.37	[{'connected_gene': 'TCEA3', 'score': 13.89}, {'connected_gene': 'ZNF436-AS1', 'score': 9.29}, {'connected_gene': 'ZNF436', 'score': 6.41}, {'connected_gene': 'ASAP3', 'score': 6.04}, {'connected_gene': 'GC01M023400', 'score': 0.44}, {'connected_gene': 'ENSG00000271420', 'score': 0.37}]
chr1	GH01I023954	23954411	23961872	2.52	[{'connected_gene': 'PNRC2', 'score': 550.77}, {'connected_gene': 'SRSF10', 'score': 30.95}, {'connected_gene': 'ELOA', 'score': 19.86}, {'connected_gene': 'KDM1A', 'score': 16.64}, {'connected_gene': 'SRRM1', 'score': 14.53}, {'connected_gene': 'LINC01355', 'score': 13.46}, {'connected_gene': 'ZNF436', 'score': 4.77}, {'connected_gene': 'ENSG00000230228', 'score': 0.44}]
chr1	GH01I023482	23482880	23485770	1.98	[{'connected_gene': 'ASAP3', 'score': 585.44}, {'connected_gene': 'ZNF436', 'score': 9.45}, {'connected_gene': 'TCEA3', 'score': 5.89}, {'connected_gene': 'GC01M023474', 'score': 0.44}]
chr1	GH01I023513	23513705	23514749	0.63	[{'connected_gene': 'ID3', 'score': 11.02}, {'connected_gene': 'ZNF436-AS1', 'score': 10.58}, {'connected_gene': 'ZNF436', 'score': 10.58}, {'connected_gene': 'ENSG00000201405', 'score': 10.58}, {'connected_gene': 'TCEA3', 'score': 6.21}, {'connected_gene': 'PIR36355', 'score': 0.44}, {'connected_gene': 'LOC101928163', 'score': 0.44}, {'connected_gene': 'E2F2', 'score': 0.37}]
chr1	GH01I023516	23516715	23517637	0.31	[{'connected_gene': 'ID3', 'score': 11.04}, {'connected_gene': 'ZNF436-AS1', 'score': 10.58}, {'connected_gene': 'ZNF436', 'score': 10.58}, {'connected_gene': 'ENSG00000201405', 'score': 10.58}, {'connected_gene': 'LOC101928163', 'score': 0.77}, {'connected_gene': 'PIR36355', 'score': 0.44}, {'connected_gene': 'E2F2', 'score': 0.39}]
chr1	GH01I023553	23553135	23565306	2.67	[{'connected_gene': 'ID3', 'score': 560.77}, {'connected_gene': 'GC01M023559', 'score': 550.77}, {'connected_gene': 'GC01M023560', 'score': 550.77}, {'connected_gene': 'PIR53087', 'score': 550.77}, {'connected_gene': 'LOC105376859', 'score': 550.77}, {'connected_gene': 'SRSF10', 'score': 37.59}, {'connected_gene': 'LINC01355', 'score': 26.48}, {'connected_gene': 'RPL11', 'score': 13.73}, {'connected_gene': 'MDS2', 'score': 12.2}, {'connected_gene': 'E2F2', 'score': 11.99}, {'connected_gene': 'PNRC2', 'score': 11.72}, {'connected_gene': 'ELOA', 'score': 11.4}, {'connected_gene': 'ASAP3', 'score': 10.91}, {'connected_gene': 'ZNF436-AS1', 'score': 9.15}, {'connected_gene': 'ZNF436', 'score': 7.6}, {'connected_gene': 'TCEA3', 'score': 5.49}]
chr1	GH01I023521	23521963	23535404	2.73	[{'connected_gene': 'E2F2', 'score': 550.77}, {'connected_gene': 'GC01P023526', 'score': 550.77}, {'connected_gene': 'SRSF10', 'score': 32.7}, {'connected_gene': 'LINC01355', 'score': 25.51}, {'connected_gene': 'ASAP3', 'score': 11.46}, {'connected_gene': 'ID3', 'score': 10.58}, {'connected_gene': 'ZNF436', 'score': 10.56}, {'connected_gene': 'KDM1A', 'score': 10.43}, {'connected_gene': 'ELOA', 'score': 10.34}, {'connected_gene': 'TCEA3', 'score': 9.31}, {'connected_gene': 'PNRC2', 'score': 7.06}, {'connected_gene': 'ENSG00000271420', 'score': 5.98}, {'connected_gene': 'RPL11', 'score': 1.68}, {'connected_gene': 'LOC101928163', 'score': 0.44}]
chr1	GH01I023339	23339853	23346153	2.09	[{'connected_gene': 'HNRNPR', 'score': 550.77}, {'connected_gene': 'ZNF436-AS1', 'score': 37.12}, {'connected_gene': 'ZNF436', 'score': 24.53}, {'connected_gene': 'ZBTB40', 'score': 16.09}, {'connected_gene': 'KDM1A', 'score': 16.06}, {'connected_gene': 'ENSG00000201405', 'score': 11.5}, {'connected_gene': 'SRSF10', 'score': 11.23}, {'connected_gene': 'ELOA', 'score': 10.31}, {'connected_gene': 'ZBTB40-IT1', 'score': 9.69}, {'connected_gene': 'TCEA3', 'score': 8.24}, {'connected_gene': 'ENSG00000284726', 'score': 0.25}]
chr1	GH01I023376	23375895	23378799	1.36	[{'connected_gene': 'ENSG00000271420', 'score': 550.77}, {'connected_gene': 'ZNF436', 'score': 13.96}, {'connected_gene': 'TCEA3', 'score': 9.34}, {'connected_gene': 'ENSG00000201405', 'score': 0.44}]
chr1	GH01I023410	23410841	23412428	0.66	[{'connected_gene': 'ENSG00000232482', 'score': 550.77}, {'connected_gene': 'ASAP3', 'score': 10.92}, {'connected_gene': 'ZNF436', 'score': 9.92}, {'connected_gene': 'TCEA3', 'score': 0.39}]
chr1	GH01I023471	23471933	23476783	0.99	[{'connected_gene': 'GC01P023474', 'score': 550.77}, {'connected_gene': 'GC01P023475', 'score': 550.77}, {'connected_gene': 'ASAP3', 'score': 33.52}, {'connected_gene': 'ZNF436-AS1', 'score': 12.55}, {'connected_gene': 'HNRNPR', 'score': 9.9}, {'connected_gene': 'ZNF436', 'score': 9.86}, {'connected_gene': 'TCEA3', 'score': 5.62}, {'connected_gene': 'GC01M023474', 'score': 0.77}]
chr1	GH01I023401	23401601	23404677	1.42	[{'connected_gene': 'GC01M023399', 'score': 550.77}, {'connected_gene': 'GC01M023400', 'score': 550.77}, {'connected_gene': 'ZNF436-AS1', 'score': 20.3}, {'connected_gene': 'ZNF436', 'score': 10.37}, {'connected_gene': 'HNRNPR', 'score': 10.0}, {'connected_gene': 'ENSG00000232482', 'score': 0.44}, {'connected_gene': 'TCEA3', 'score': 0.34}]
chr1	GH01I023589	23589002	23603629	1.7	[{'connected_gene': 'PIR62098', 'score': 550.77}, {'connected_gene': 'SRSF10', 'score': 26.64}, {'connected_gene': 'LINC01355', 'score': 21.08}, {'connected_gene': 'E2F2', 'score': 12.7}, {'connected_gene': 'ELOA', 'score': 12.52}, {'connected_gene': 'HNRNPR', 'score': 12.51}, {'connected_gene': 'PNRC2', 'score': 12.16}, {'connected_gene': 'ID3', 'score': 12.15}, {'connected_gene': 'ZNF436', 'score': 11.6}, {'connected_gene': 'RPL11', 'score': 11.32}, {'connected_gene': 'ASAP3', 'score': 10.29}, {'connected_gene': 'ZNF436-AS1', 'score': 10.21}, {'connected_gene': 'ENSG00000201405', 'score': 10.21}, {'connected_gene': 'KDM1A', 'score': 10.09}, {'connected_gene': 'STPG1', 'score': 4.78}, {'connected_gene': 'CNR2', 'score': 1.79}, {'connected_gene': 'MDS2', 'score': 0.39}]