PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000315238	[[5566923, 5568225]]	[[5567048, 5567498]]
NM_005185	[[5566851, 5568231]]	[[5567048, 5567498]]

Promoter

Chrom	Start	End	Description
chr10	5566916	5566932	CAGE_peak_1_at_CALML3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr10	GH10I005582	5582156	5591991	1.52	[{'connected_gene': 'FBXO18', 'score': 13.77}, {'connected_gene': 'FAM208B', 'score': 13.02}, {'connected_gene': 'LOC105376384', 'score': 12.71}, {'connected_gene': 'ENSG00000226647', 'score': 11.72}, {'connected_gene': 'CALML5', 'score': 11.64}, {'connected_gene': 'ENSG00000256462', 'score': 11.27}, {'connected_gene': 'CALML3', 'score': 11.27}, {'connected_gene': 'CALML3-AS1', 'score': 11.27}, {'connected_gene': 'LOC105376382', 'score': 8.2}, {'connected_gene': 'NET1', 'score': 6.76}, {'connected_gene': 'LOC102723629', 'score': 6.73}, {'connected_gene': 'ASB13', 'score': 6.46}, {'connected_gene': 'LOC105376381', 'score': 0.34}]
chr10	GH10I005528	5528800	5532870	0.73	[{'connected_gene': 'FBXO18', 'score': 15.68}, {'connected_gene': 'LOC105376384', 'score': 14.77}, {'connected_gene': 'FAM208B', 'score': 14.45}, {'connected_gene': 'RBM17', 'score': 12.12}, {'connected_gene': 'CALML5', 'score': 11.4}, {'connected_gene': 'ENSG00000226647', 'score': 10.83}, {'connected_gene': 'CALML3', 'score': 10.51}, {'connected_gene': 'CALML3-AS1', 'score': 10.24}, {'connected_gene': 'LOC105376380', 'score': 0.34}]
chr10	GH10I005503	5503018	5504441	1	[{'connected_gene': 'FBXO18', 'score': 15.13}, {'connected_gene': 'LOC105376384', 'score': 14.41}, {'connected_gene': 'FAM208B', 'score': 12.09}, {'connected_gene': 'ENSG00000226647', 'score': 12.05}, {'connected_gene': 'GDI2', 'score': 11.44}, {'connected_gene': 'CALML5', 'score': 11.24}, {'connected_gene': 'CALML3', 'score': 0.34}]
chr10	GH10I005494	5494583	5495018	0.38	[{'connected_gene': 'CALML3', 'score': 19.4}, {'connected_gene': 'CALML5', 'score': 8.08}, {'connected_gene': 'NET1', 'score': 0.18}]
chr10	GH10I005506	5506322	5510209	0.59	[{'connected_gene': 'CALML3', 'score': 6.23}, {'connected_gene': 'CALML5', 'score': 5.36}]
chr10	GH10I005511	5511551	5511711	0.64	[{'connected_gene': 'CALML3', 'score': 0.39}, {'connected_gene': 'CALML5', 'score': 0.39}]
chr10	GH10I005492	5492841	5494408	0.84	[{'connected_gene': 'CALML3', 'score': 29.89}, {'connected_gene': 'ENSG00000256462', 'score': 10.68}, {'connected_gene': 'CALML3-AS1', 'score': 10.68}, {'connected_gene': 'CALML5', 'score': 8.18}, {'connected_gene': 'NET1', 'score': 0.18}]
chr10	GH10I005515	5515770	5516867	0.7	[{'connected_gene': 'CALML3', 'score': 8.42}, {'connected_gene': 'CALML3-AS1', 'score': 0.44}, {'connected_gene': 'CALML5', 'score': 0.37}]
chr10	GH10I005517	5517092	5519068	1.02	[{'connected_gene': 'CALML3', 'score': 8.13}, {'connected_gene': 'CALML3-AS1', 'score': 0.44}, {'connected_gene': 'CALML5', 'score': 0.37}]
chr10	GH10I005442	5442528	5444161	0.78	[{'connected_gene': 'TUBAL3', 'score': 12.95}, {'connected_gene': 'ASB13', 'score': 10.68}, {'connected_gene': 'CALML5', 'score': 10.44}, {'connected_gene': 'ENSG00000256462', 'score': 10.34}, {'connected_gene': 'CALML3', 'score': 10.34}, {'connected_gene': 'CALML3-AS1', 'score': 10.34}, {'connected_gene': 'UCN3', 'score': 9.96}, {'connected_gene': 'NET1', 'score': 0.29}]
chr10	GH10I005441	5441647	5442427	0.9	[{'connected_gene': 'ASB13', 'score': 10.68}, {'connected_gene': 'CALML5', 'score': 10.44}, {'connected_gene': 'ENSG00000256462', 'score': 10.34}, {'connected_gene': 'CALML3', 'score': 10.34}, {'connected_gene': 'CALML3-AS1', 'score': 10.34}, {'connected_gene': 'UCN3', 'score': 9.96}, {'connected_gene': 'TUBAL3', 'score': 9.89}, {'connected_gene': 'NET1', 'score': 0.31}]
chr10	GH10I005642	5642697	5647402	1.05	[{'connected_gene': 'ASB13', 'score': 22.33}, {'connected_gene': 'GDI2', 'score': 21.65}, {'connected_gene': 'FBXO18', 'score': 15.14}, {'connected_gene': 'LOC105376384', 'score': 14.43}, {'connected_gene': 'LOC102723629', 'score': 12.3}, {'connected_gene': 'FAM208B', 'score': 12.28}, {'connected_gene': 'ENSG00000226647', 'score': 12.14}, {'connected_gene': 'CALML5', 'score': 10.32}, {'connected_gene': 'ENSG00000256462', 'score': 10.17}, {'connected_gene': 'CALML3-AS1', 'score': 10.17}, {'connected_gene': 'CALML3', 'score': 10.16}, {'connected_gene': 'LOC105376382', 'score': 4.91}]
chr10	GH10I005617	5617574	5620524	0.84	[{'connected_gene': 'ASB13', 'score': 16.87}, {'connected_gene': 'LOC102723629', 'score': 12.54}, {'connected_gene': 'CALML5', 'score': 11.33}, {'connected_gene': 'ENSG00000256462', 'score': 10.47}, {'connected_gene': 'CALML3-AS1', 'score': 10.47}, {'connected_gene': 'CALML3', 'score': 10.47}, {'connected_gene': 'NET1', 'score': 6.06}, {'connected_gene': 'ENSG00000228685', 'score': 0.44}, {'connected_gene': 'LOC105376383', 'score': 0.44}]
chr10	GH10I005444	5444422	5451444	2.48	[{'connected_gene': 'NET1', 'score': 550.28}, {'connected_gene': 'LOC105376384', 'score': 25.59}, {'connected_gene': 'NRBF2P5', 'score': 19.97}, {'connected_gene': 'TUBAL3', 'score': 16.73}, {'connected_gene': 'GDI2', 'score': 14.11}, {'connected_gene': 'FBXO18', 'score': 13.74}, {'connected_gene': 'FAM208B', 'score': 11.89}, {'connected_gene': 'CALML5', 'score': 11.42}, {'connected_gene': 'ENSG00000256462', 'score': 11.19}, {'connected_gene': 'CALML3', 'score': 11.19}, {'connected_gene': 'CALML3-AS1', 'score': 11.19}, {'connected_gene': 'ASB13', 'score': 10.68}, {'connected_gene': 'ENSG00000226647', 'score': 9.98}, {'connected_gene': 'UCN3', 'score': 9.95}]
chr10	GH10I005543	5543863	5555596	1.77	[{'connected_gene': 'FAM208B', 'score': 48.32}, {'connected_gene': 'FBXO18', 'score': 35.63}, {'connected_gene': 'LOC105376384', 'score': 29.78}, {'connected_gene': 'CALML3-AS1', 'score': 26.61}, {'connected_gene': 'ENSG00000226647', 'score': 20.9}, {'connected_gene': 'CALML3', 'score': 15.22}, {'connected_gene': 'NRBF2P5', 'score': 13.1}, {'connected_gene': 'ENSG00000256462', 'score': 12.26}, {'connected_gene': 'GDI2', 'score': 11.44}, {'connected_gene': 'CALML5', 'score': 11.21}, {'connected_gene': 'ANKRD16', 'score': 11.04}, {'connected_gene': 'NET1', 'score': 4.74}, {'connected_gene': 'LOC105376380', 'score': 0.77}]
chr10	GH10I005573	5573594	5577379	1.15	[{'connected_gene': 'FAM208B', 'score': 18.43}, {'connected_gene': 'NRBF2P5', 'score': 12.0}, {'connected_gene': 'ENSG00000256462', 'score': 11.95}, {'connected_gene': 'CALML3-AS1', 'score': 11.95}, {'connected_gene': 'CALML3', 'score': 11.94}, {'connected_gene': 'CALML5', 'score': 11.19}, {'connected_gene': 'FBXO18', 'score': 11.03}, {'connected_gene': 'RBM17', 'score': 10.97}, {'connected_gene': 'ENSG00000226647', 'score': 10.74}, {'connected_gene': 'ANKRD16', 'score': 10.63}, {'connected_gene': 'LOC105376384', 'score': 10.49}, {'connected_gene': 'GDI2', 'score': 9.51}, {'connected_gene': 'ASB13', 'score': 6.79}, {'connected_gene': 'LOC105376383', 'score': 5.26}, {'connected_gene': 'LOC105376381', 'score': 0.44}, {'connected_gene': 'LOC105376382', 'score': 0.34}]
chr10	GH10I005534	5534378	5536007	1.35	[{'connected_gene': 'CALML5', 'score': 11.17}, {'connected_gene': 'CALML3', 'score': 4.7}, {'connected_gene': 'NET1', 'score': 3.1}, {'connected_gene': 'CALML3-AS1', 'score': 0.44}, {'connected_gene': 'LOC105376380', 'score': 0.37}]
chr10	GH10I005474	5474278	5475407	0.66	[{'connected_gene': 'CALML5', 'score': 11.66}, {'connected_gene': 'CALML3', 'score': 11.43}, {'connected_gene': 'ENSG00000256462', 'score': 11.42}, {'connected_gene': 'CALML3-AS1', 'score': 11.42}, {'connected_gene': 'TUBAL3', 'score': 11.3}, {'connected_gene': 'ASB13', 'score': 10.41}, {'connected_gene': 'NET1', 'score': 0.21}]
chr10	GH10I005472	5472418	5472567	1.12	[{'connected_gene': 'CALML5', 'score': 11.63}, {'connected_gene': 'ENSG00000256462', 'score': 11.42}, {'connected_gene': 'CALML3', 'score': 11.42}, {'connected_gene': 'CALML3-AS1', 'score': 11.42}, {'connected_gene': 'TUBAL3', 'score': 10.04}, {'connected_gene': 'NET1', 'score': 0.22}]
chr10	GH10I005451	5451818	5451911	0.2	[{'connected_gene': 'CALML5', 'score': 11.44}, {'connected_gene': 'ENSG00000256462', 'score': 11.2}, {'connected_gene': 'CALML3', 'score': 11.2}, {'connected_gene': 'CALML3-AS1', 'score': 11.2}, {'connected_gene': 'NET1', 'score': 0.28}]
chr10	GH10I005500	5500376	5501463	0.43	[{'connected_gene': 'CALML5', 'score': 558.5}, {'connected_gene': 'ENSG00000256462', 'score': 11.73}, {'connected_gene': 'CALML3', 'score': 11.73}, {'connected_gene': 'CALML3-AS1', 'score': 11.7}]
chr10	GH10I005499	5499560	5499619	0.96	[{'connected_gene': 'CALML5', 'score': 550.77}, {'connected_gene': 'CALML3', 'score': 0.34}]
chr10	GH10I005647	5647466	5648027	0.56	[{'connected_gene': 'CALML5', 'score': 10.32}, {'connected_gene': 'GDI2', 'score': 10.27}, {'connected_gene': 'ENSG00000256462', 'score': 10.16}, {'connected_gene': 'CALML3', 'score': 10.16}, {'connected_gene': 'CALML3-AS1', 'score': 10.16}, {'connected_gene': 'ASB13', 'score': 5.14}, {'connected_gene': 'LOC102723629', 'score': 0.37}]
chr10	GH10I005476	5476273	5481393	1.15	[{'connected_gene': 'CALML5', 'score': 18.98}, {'connected_gene': 'CALML3-AS1', 'score': 17.94}, {'connected_gene': 'ENSG00000256462', 'score': 11.46}, {'connected_gene': 'CALML3', 'score': 11.46}, {'connected_gene': 'ASB13', 'score': 10.41}, {'connected_gene': 'TUBAL3', 'score': 6.06}, {'connected_gene': 'NET1', 'score': 0.2}]
chr10	GH10I005611	5611958	5612207	0.72	[{'connected_gene': 'LOC105376383', 'score': 550.77}, {'connected_gene': 'ENSG00000256462', 'score': 11.03}, {'connected_gene': 'CALML3', 'score': 11.03}, {'connected_gene': 'CALML3-AS1', 'score': 11.03}, {'connected_gene': 'TUBAL3', 'score': 10.52}, {'connected_gene': 'CALML5', 'score': 10.2}, {'connected_gene': 'ASB13', 'score': 5.44}, {'connected_gene': 'ENSG00000228685', 'score': 0.39}]
chr10	GH10I005608	5608971	5611604	1.27	[{'connected_gene': 'LOC105376383', 'score': 550.77}, {'connected_gene': 'ENSG00000256462', 'score': 11.04}, {'connected_gene': 'CALML3-AS1', 'score': 11.04}, {'connected_gene': 'CALML3', 'score': 11.03}, {'connected_gene': 'LOC102723629', 'score': 11.02}, {'connected_gene': 'TUBAL3', 'score': 10.52}, {'connected_gene': 'CALML5', 'score': 10.2}, {'connected_gene': 'ASB13', 'score': 6.13}, {'connected_gene': 'LOC105376382', 'score': 6.03}]
chr10	GH10I005594	5594121	5598048	1.42	[{'connected_gene': 'LOC105376382', 'score': 557.43}, {'connected_gene': 'CALML3', 'score': 13.98}, {'connected_gene': 'CALML3-AS1', 'score': 11.38}, {'connected_gene': 'ENSG00000256462', 'score': 11.37}, {'connected_gene': 'CALML5', 'score': 11.13}, {'connected_gene': 'UCN3', 'score': 10.3}, {'connected_gene': 'GDI2', 'score': 10.01}, {'connected_gene': 'ASB13', 'score': 7.54}, {'connected_gene': 'LOC102723629', 'score': 5.62}, {'connected_gene': 'NET1', 'score': 3.31}, {'connected_gene': 'LOC105376381', 'score': 0.31}]
chr10	GH10I005563	5563345	5568190	1.41	[{'connected_gene': 'LOC105376381', 'score': 550.77}, {'connected_gene': 'CALML3', 'score': 18.14}, {'connected_gene': 'CALML3-AS1', 'score': 11.76}, {'connected_gene': 'ENSG00000256462', 'score': 11.74}, {'connected_gene': 'CALML5', 'score': 10.99}, {'connected_gene': 'LOC105376382', 'score': 5.44}, {'connected_gene': 'LOC105376380', 'score': 0.39}]
chr10	GH10I005616	5616587	5617563	0.4	[{'connected_gene': 'LOC102723629', 'score': 12.36}, {'connected_gene': 'CALML5', 'score': 11.33}, {'connected_gene': 'ENSG00000256462', 'score': 10.69}, {'connected_gene': 'CALML3', 'score': 10.69}, {'connected_gene': 'CALML3-AS1', 'score': 10.69}, {'connected_gene': 'ASB13', 'score': 9.14}, {'connected_gene': 'ENSG00000228685', 'score': 0.44}, {'connected_gene': 'LOC105376383', 'score': 0.44}]
chr10	GH10I005613	5613479	5616207	1.11	[{'connected_gene': 'LOC102723629', 'score': 12.62}, {'connected_gene': 'ENSG00000256462', 'score': 11.44}, {'connected_gene': 'CALML3-AS1', 'score': 11.44}, {'connected_gene': 'CALML3', 'score': 11.43}, {'connected_gene': 'CALML5', 'score': 11.01}, {'connected_gene': 'TUBAL3', 'score': 10.51}, {'connected_gene': 'ASB13', 'score': 10.37}, {'connected_gene': 'NET1', 'score': 6.29}, {'connected_gene': 'LOC105376383', 'score': 0.77}, {'connected_gene': 'ENSG00000228685', 'score': 0.39}]
chr10	GH10I005486	5486036	5490531	1.12	[{'connected_gene': 'CALML3-AS1', 'score': 17.42}, {'connected_gene': 'ENSG00000256462', 'score': 11.46}, {'connected_gene': 'CALML3', 'score': 11.46}, {'connected_gene': 'CALML5', 'score': 9.45}, {'connected_gene': 'TUBAL3', 'score': 9.28}, {'connected_gene': 'UCN3', 'score': 9.14}, {'connected_gene': 'NET1', 'score': 0.18}]
chr10	GH10I005525	5525723	5526707	0.51	[{'connected_gene': 'CALML3-AS1', 'score': 558.52}, {'connected_gene': 'ENSG00000256462', 'score': 550.77}, {'connected_gene': 'CALML3', 'score': 9.7}]
chr10	GH10I005464	5464248	5469492	1.3	[{'connected_gene': 'CALML3-AS1', 'score': 16.35}, {'connected_gene': 'TUBAL3', 'score': 12.16}, {'connected_gene': 'CALML5', 'score': 11.62}, {'connected_gene': 'ENSG00000256462', 'score': 11.41}, {'connected_gene': 'CALML3', 'score': 11.41}, {'connected_gene': 'NET1', 'score': 0.23}]
chr10	GH10I005473	5472926	5473709	0.63	[{'connected_gene': 'CALML3-AS1', 'score': 16.17}, {'connected_gene': 'CALML5', 'score': 11.63}, {'connected_gene': 'ENSG00000256462', 'score': 11.42}, {'connected_gene': 'CALML3', 'score': 11.42}, {'connected_gene': 'NET1', 'score': 0.21}]
chr10	GH10I005598	5598405	5599437	0.67	[{'connected_gene': 'ENSG00000256462', 'score': 11.14}, {'connected_gene': 'CALML3', 'score': 11.14}, {'connected_gene': 'CALML3-AS1', 'score': 11.14}, {'connected_gene': 'CALML5', 'score': 11.13}, {'connected_gene': 'GDI2', 'score': 10.01}, {'connected_gene': 'ASB13', 'score': 6.74}, {'connected_gene': 'LOC102723629', 'score': 6.11}, {'connected_gene': 'LOC105376382', 'score': 0.77}, {'connected_gene': 'LOC105376383', 'score': 0.39}]
chr10	GH10I005572	5572358	5573274	0.38	[{'connected_gene': 'ENSG00000256462', 'score': 11.95}, {'connected_gene': 'CALML3', 'score': 11.95}, {'connected_gene': 'CALML3-AS1', 'score': 11.95}, {'connected_gene': 'CALML5', 'score': 11.2}, {'connected_gene': 'GDI2', 'score': 9.51}, {'connected_gene': 'LOC105376381', 'score': 0.44}, {'connected_gene': 'LOC105376382', 'score': 0.34}]
chr10	GH10I005571	5571246	5572298	1.03	[{'connected_gene': 'ENSG00000256462', 'score': 11.95}, {'connected_gene': 'CALML3', 'score': 11.95}, {'connected_gene': 'CALML3-AS1', 'score': 11.95}, {'connected_gene': 'CALML5', 'score': 11.2}, {'connected_gene': 'GDI2', 'score': 9.51}, {'connected_gene': 'LOC105376381', 'score': 0.44}, {'connected_gene': 'LOC105376382', 'score': 0.34}]
chr10	GH10I005599	5599447	5603285	0.62	[{'connected_gene': 'ENSG00000256462', 'score': 11.13}, {'connected_gene': 'CALML3', 'score': 11.13}, {'connected_gene': 'CALML3-AS1', 'score': 11.13}, {'connected_gene': 'CALML5', 'score': 11.12}, {'connected_gene': 'LOC102723629', 'score': 10.25}, {'connected_gene': 'GDI2', 'score': 10.01}, {'connected_gene': 'ASB13', 'score': 7.07}, {'connected_gene': 'LOC105376382', 'score': 6.69}, {'connected_gene': 'LOC105376383', 'score': 0.44}]
chr10	GH10I005490	5490646	5491495	0.51	[{'connected_gene': 'ENSG00000256462', 'score': 11.18}, {'connected_gene': 'CALML3', 'score': 11.18}, {'connected_gene': 'CALML3-AS1', 'score': 11.16}, {'connected_gene': 'UCN3', 'score': 9.1}, {'connected_gene': 'CALML5', 'score': 0.44}, {'connected_gene': 'NET1', 'score': 0.18}]
chr10	GH10I005581	5581738	5581887	0.72	[{'connected_gene': 'ENSG00000256462', 'score': 11.28}, {'connected_gene': 'CALML3', 'score': 11.28}, {'connected_gene': 'CALML3-AS1', 'score': 11.28}, {'connected_gene': 'LOC105376382', 'score': 0.39}, {'connected_gene': 'LOC105376381', 'score': 0.37}]
chr10	GH10I005524	5524912	5524971	0.7	[{'connected_gene': 'ENSG00000256462', 'score': 550.77}, {'connected_gene': 'CALML3', 'score': 550.77}, {'connected_gene': 'CALML3-AS1', 'score': 550.77}]
chr10	GH10I005622	5622562	5623887	1.35	[{'connected_gene': 'ENSG00000228685', 'score': 550.77}, {'connected_gene': 'ASB13', 'score': 18.75}, {'connected_gene': 'ENSG00000256462', 'score': 10.47}, {'connected_gene': 'CALML3', 'score': 10.47}, {'connected_gene': 'CALML3-AS1', 'score': 10.47}, {'connected_gene': 'CALML5', 'score': 10.23}, {'connected_gene': 'LOC102723629', 'score': 7.62}, {'connected_gene': 'LOC105376382', 'score': 5.39}, {'connected_gene': 'LOC105376383', 'score': 0.39}]
chr10	GH10I005625	5625538	5627227	0.85	[{'connected_gene': 'ENSG00000228685', 'score': 550.77}, {'connected_gene': 'ASB13', 'score': 17.02}, {'connected_gene': 'ENSG00000256462', 'score': 10.46}, {'connected_gene': 'CALML3', 'score': 10.46}, {'connected_gene': 'CALML3-AS1', 'score': 10.46}, {'connected_gene': 'LOC102723629', 'score': 10.29}, {'connected_gene': 'CALML5', 'score': 10.23}, {'connected_gene': 'RN7SL445P', 'score': 0.44}]
chr10	GH10I005604	5604725	5605816	0.38	[{'connected_gene': 'ENSG00000256462', 'score': 11.05}, {'connected_gene': 'CALML3-AS1', 'score': 11.05}, {'connected_gene': 'CALML3', 'score': 11.04}, {'connected_gene': 'TUBAL3', 'score': 10.52}, {'connected_gene': 'CALML5', 'score': 10.21}, {'connected_gene': 'LOC102723629', 'score': 7.62}, {'connected_gene': 'NET1', 'score': 5.88}, {'connected_gene': 'LOC105376383', 'score': 0.44}, {'connected_gene': 'LOC105376382', 'score': 0.44}]
chr10	GH10I005579	5579207	5580263	0.54	[{'connected_gene': 'ENSG00000256462', 'score': 11.94}, {'connected_gene': 'CALML3-AS1', 'score': 11.94}, {'connected_gene': 'CALML3', 'score': 11.93}, {'connected_gene': 'CALML5', 'score': 11.18}, {'connected_gene': 'GDI2', 'score': 9.51}, {'connected_gene': 'ASB13', 'score': 6.27}, {'connected_gene': 'LOC105376381', 'score': 0.39}, {'connected_gene': 'LOC105376382', 'score': 0.37}]
chr10	GH10I005559	5559001	5561108	1.19	[{'connected_gene': 'ENSG00000256462', 'score': 11.86}, {'connected_gene': 'CALML3-AS1', 'score': 11.86}, {'connected_gene': 'CALML3', 'score': 11.84}, {'connected_gene': 'CALML5', 'score': 10.94}, {'connected_gene': 'RN7SKP78', 'score': 5.39}, {'connected_gene': 'LOC105376381', 'score': 0.44}, {'connected_gene': 'LOC105376380', 'score': 0.44}]