PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000350889	[[27092839, 27094422], [27097487, 27097679], [27098570, 27098779], [27099193, 27099274], [27099913, 27100009], [27101227, 27101318], [27115867, 27115903]]	[[27094362, 27094422], [27097487, 27097679], [27098570, 27098779], [27099193, 27099274], [27099913, 27100009], [27101227, 27101240]]
ENST00000519997	[[27093401, 27094422], [27096742, 27096796], [27097487, 27097679], [27098570, 27098779], [27099913, 27100009], [27115867, 27115918]]	[[27096775, 27096796], [27097487, 27097679], [27098570, 27098779], [27099913, 27099995]]
ENST00000265770	[[27093819, 27094422], [27097487, 27097679], [27098570, 27098779], [27099913, 27100009], [27101227, 27101318], [27115867, 27115926]]	[[27094362, 27094422], [27097487, 27097679], [27098570, 27098779], [27099913, 27100009], [27101227, 27101240]]
ENST00000523048	[[27093991, 27094422], [27096742, 27096796], [27097487, 27097679], [27098570, 27098779], [27099193, 27099274], [27099913, 27100009], [27101227, 27101318], [27115867, 27115937]]	[[27096775, 27096796], [27097487, 27097679], [27098570, 27098779], [27099193, 27099274], [27099913, 27100009], [27101227, 27101240]]
ENST00000519614	[[27096856, 27097679], [27098570, 27098779], [27099913, 27100009], [27101227, 27101318], [27115867, 27115921]]	[[27097301, 27097679], [27098570, 27098779], [27099913, 27100009], [27101227, 27101240]]
ENST00000522908	[[27097206, 27097679], [27098570, 27098779], [27099193, 27099274], [27099913, 27100009], [27101227, 27101318], [27115867, 27115921]]	[[27097301, 27097679], [27098570, 27098779], [27099193, 27099274], [27099913, 27100009], [27101227, 27101240]]
ENST00000522750	[[27098684, 27098779], [27099193, 27099274], [27099626, 27100009], [27101227, 27101318], [27115867, 27115915]]	None
NM_001283053	[[27092839, 27094422], [27096742, 27096796], [27097487, 27097679], [27098570, 27098779], [27099193, 27099274], [27099913, 27100009], [27101227, 27101318], [27115867, 27115956]]	[[27096775, 27096796], [27097487, 27097679], [27098570, 27098779], [27099193, 27099274], [27099913, 27100009], [27101227, 27101240]]
NM_030795	[[27092839, 27094422], [27097487, 27097679], [27098570, 27098779], [27099193, 27099274], [27099913, 27100009], [27101227, 27101318], [27115867, 27115956]]	[[27094362, 27094422], [27097487, 27097679], [27098570, 27098779], [27099193, 27099274], [27099913, 27100009], [27101227, 27101240]]
NM_001283054	[[27092839, 27094422], [27097487, 27097679], [27098570, 27098779], [27099913, 27100009], [27101227, 27101318], [27115867, 27115956]]	[[27094362, 27094422], [27097487, 27097679], [27098570, 27098779], [27099913, 27100009], [27101227, 27101240]]
NM_001283055	[[27092839, 27094422], [27096742, 27096796], [27097487, 27097679], [27098570, 27098779], [27099913, 27100009], [27115867, 27115956]]	[[27096775, 27096796], [27097487, 27097679], [27098570, 27098779], [27099913, 27099995]]

Promoter

Chrom	Start	End	Description
chr8	27115909	27115927	CAGE_peak_1_at_STMN4_5end
chr8	27115931	27115942	CAGE_peak_2_at_STMN4_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr8	GH08I027260	27260348	27263442	0.57	[{'connected_gene': 'STMN4', 'score': 7.58}, {'connected_gene': 'TRIM35', 'score': 6.19}, {'connected_gene': 'PTK2B', 'score': 5.04}, {'connected_gene': 'PIR41134', 'score': 0.34}]
chr8	GH08I027280	27280652	27282745	1.2	[{'connected_gene': 'STMN4', 'score': 11.2}, {'connected_gene': 'TRIM35', 'score': 9.28}, {'connected_gene': 'PTK2B', 'score': 8.46}, {'connected_gene': 'PIR41134', 'score': 0.77}]
chr8	GH08I027299	27299396	27300582	1.07	[{'connected_gene': 'STMN4', 'score': 11.15}, {'connected_gene': 'TRIM35', 'score': 9.95}, {'connected_gene': 'PIR41134', 'score': 0.39}]
chr8	GH08I027289	27289722	27290891	0.2	[{'connected_gene': 'STMN4', 'score': 11.16}, {'connected_gene': 'TRIM35', 'score': 10.67}, {'connected_gene': 'PIR41134', 'score': 0.77}]
chr8	GH08I027295	27295992	27297582	0.58	[{'connected_gene': 'STMN4', 'score': 10.98}, {'connected_gene': 'PTK2B', 'score': 6.24}, {'connected_gene': 'CHRNA2', 'score': 4.86}, {'connected_gene': 'TRIM35', 'score': 0.39}, {'connected_gene': 'PIR41134', 'score': 0.39}]
chr8	GH08I027230	27230817	27233736	0.95	[{'connected_gene': 'STMN4', 'score': 17.73}, {'connected_gene': 'PTK2B', 'score': 4.42}, {'connected_gene': 'GC08P027227', 'score': 0.77}]
chr8	GH08I027240	27240557	27251028	0.66	[{'connected_gene': 'STMN4', 'score': 15.2}, {'connected_gene': 'EPHX2', 'score': 5.43}, {'connected_gene': 'PTK2B', 'score': 4.85}, {'connected_gene': 'ADRA1A', 'score': 4.55}, {'connected_gene': 'LOC105379337', 'score': 4.48}, {'connected_gene': 'GC08P027227', 'score': 0.37}]
chr8	GH08I027256	27256806	27259193	1.47	[{'connected_gene': 'STMN4', 'score': 550.77}, {'connected_gene': 'ADRA1A', 'score': 5.0}, {'connected_gene': 'GC08P027227', 'score': 0.29}]
chr8	GH08I027218	27218668	27218743	0.33	[{'connected_gene': 'STMN4', 'score': 10.75}, {'connected_gene': 'LOC105379340', 'score': 10.63}, {'connected_gene': 'ADRA1A', 'score': 2.68}, {'connected_gene': 'EPHX2', 'score': 1.43}, {'connected_gene': 'GC08P027227', 'score': 0.44}, {'connected_gene': 'GC08P027175', 'score': 0.26}]
chr8	GH08I027255	27255549	27256047	0.31	[{'connected_gene': 'STMN4', 'score': 0.77}, {'connected_gene': 'GC08P027227', 'score': 0.31}]
chr8	GH08I027237	27237982	27238116	0.42	[{'connected_gene': 'STMN4', 'score': 12.78}, {'connected_gene': 'GC08P027227', 'score': 0.39}]
chr8	GH08I027635	27635763	27638474	1.1	[{'connected_gene': 'SCARA3', 'score': 15.62}, {'connected_gene': 'CLU', 'score': 5.14}, {'connected_gene': 'STMN4', 'score': 3.18}, {'connected_gene': 'CHRNA2', 'score': 1.69}, {'connected_gene': 'RNU6-1086P', 'score': 0.26}]
chr8	GH08I027267	27267898	27269665	0.58	[{'connected_gene': 'TRIM35', 'score': 7.56}, {'connected_gene': 'STMN4', 'score': 0.44}, {'connected_gene': 'PIR41134', 'score': 0.37}]
chr8	GH08I027273	27273944	27275200	1.34	[{'connected_gene': 'TRIM35', 'score': 9.32}, {'connected_gene': 'PIR41134', 'score': 0.39}, {'connected_gene': 'STMN4', 'score': 0.37}]
chr8	GH08I027403	27403539	27407064	1.36	[{'connected_gene': 'PTK2B', 'score': 15.03}, {'connected_gene': 'STMN4', 'score': 9.61}, {'connected_gene': 'MIR6842', 'score': 0.31}]
chr8	GH08I027253	27253711	27255212	0.46	[{'connected_gene': 'EPHX2', 'score': 4.96}, {'connected_gene': 'ADRA1A', 'score': 4.35}, {'connected_gene': 'STMN4', 'score': 0.77}, {'connected_gene': 'GC08P027227', 'score': 0.31}]
chr8	GH08I027238	27238402	27240510	0.2	[{'connected_gene': 'ADRA1A', 'score': 6.25}, {'connected_gene': 'BNIP3L', 'score': 5.24}, {'connected_gene': 'GC08P027227', 'score': 0.39}, {'connected_gene': 'STMN4', 'score': 0.37}]
chr8	GH08I027286	27286557	27287440	0.63	[{'connected_gene': 'PIR41134', 'score': 550.77}, {'connected_gene': 'STMN4', 'score': 11.17}, {'connected_gene': 'TRIM35', 'score': 5.3}]