PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000602377	[[67708433, 67709956], [67719414, 67719705], [67753065, 67753242]]	None
ENST00000268797	[[67708435, 67709956], [67719359, 67719705], [67753065, 67753324]]	[[67709057, 67709956], [67719359, 67719618]]
ENST00000602522	[[67708436, 67711387]]	None
ENST00000602627	[[67709802, 67709956], [67711668, 67711760], [67719359, 67719515]]	None
ENST00000602496	[[67714651, 67715393], [67718580, 67719705], [67753065, 67753227]]	[[67719279, 67719618]]
ENST00000602279	[[67714676, 67717618]]	None
ENST00000602855	[[67717182, 67717487], [67719359, 67719705], [67753065, 67753233]]	None
NM_030819	[[67708435, 67709956], [67719359, 67719705], [67753065, 67753273]]	[[67709057, 67709956], [67719359, 67719618]]
NR_027398	[[67708435, 67709956], [67753065, 67753273]]	None
NM_001243650	[[67714618, 67719705], [67753065, 67753273]]	[[67719279, 67719618]]

Promoter

Chrom	Start	End	Description
chr16	67753206	67753268	CAGE_peak_1_at_GFOD2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr16	GH16I067708	67708221	67709360	0.46	[{'connected_gene': 'ENKD1', 'score': 11.34}, {'connected_gene': 'C16orf86', 'score': 11.34}, {'connected_gene': 'PRMT7', 'score': 10.98}, {'connected_gene': 'PARD6A', 'score': 10.92}, {'connected_gene': 'ACD', 'score': 10.92}, {'connected_gene': 'CENPT', 'score': 10.72}, {'connected_gene': 'THAP11', 'score': 10.71}, {'connected_gene': 'RANBP10', 'score': 10.66}, {'connected_gene': 'TSNAXIP1', 'score': 10.66}, {'connected_gene': 'CARMIL2', 'score': 10.28}, {'connected_gene': 'EDC4', 'score': 10.16}, {'connected_gene': 'ENSG00000237718', 'score': 10.06}, {'connected_gene': 'RIPOR1', 'score': 9.9}, {'connected_gene': 'PSKH1', 'score': 9.66}, {'connected_gene': 'NRN1L', 'score': 9.55}, {'connected_gene': 'GFOD2', 'score': 0.39}, {'connected_gene': 'PIR36768', 'score': 0.31}]
chr16	GH16I067714	67714213	67714272	0.61	[{'connected_gene': 'GFOD2', 'score': 550.44}, {'connected_gene': 'ENKD1', 'score': 10.83}, {'connected_gene': 'C16orf86', 'score': 10.83}, {'connected_gene': 'PARD6A', 'score': 10.81}, {'connected_gene': 'ACD', 'score': 10.81}, {'connected_gene': 'THAP11', 'score': 10.0}, {'connected_gene': 'EDC4', 'score': 10.0}, {'connected_gene': 'CENPT', 'score': 9.99}, {'connected_gene': 'CARMIL2', 'score': 9.7}, {'connected_gene': 'RIPOR1', 'score': 9.66}, {'connected_gene': 'ENSG00000237718', 'score': 9.25}, {'connected_gene': 'HSD11B2', 'score': 9.02}, {'connected_gene': 'NFATC3', 'score': 8.94}, {'connected_gene': 'PIR36768', 'score': 0.29}]
chr16	GH16I067718	67718024	67720747	2.04	[{'connected_gene': 'GFOD2', 'score': 555.51}, {'connected_gene': 'RANBP10', 'score': 11.3}, {'connected_gene': 'TSNAXIP1', 'score': 11.3}, {'connected_gene': 'PARD6A', 'score': 10.5}, {'connected_gene': 'ACD', 'score': 10.5}, {'connected_gene': 'TMEM208', 'score': 10.26}, {'connected_gene': 'EDC4', 'score': 10.08}, {'connected_gene': 'DUS2', 'score': 9.38}, {'connected_gene': 'PIR36768', 'score': 0.28}]
chr16	GH16I068396	68396658	68396787	0.65	[{'connected_gene': 'GFOD2', 'score': 4.17}, {'connected_gene': 'GC16M068393', 'score': 0.77}, {'connected_gene': 'SMPD3', 'score': 0.23}]
chr16	GH16I067760	67760124	67761405	0.8	[{'connected_gene': 'RANBP10', 'score': 29.15}, {'connected_gene': 'GFOD2', 'score': 13.54}, {'connected_gene': 'TSNAXIP1', 'score': 10.96}, {'connected_gene': 'LCAT', 'score': 10.85}, {'connected_gene': 'SLC12A4', 'score': 10.84}, {'connected_gene': 'EDC4', 'score': 10.48}, {'connected_gene': 'CARMIL2', 'score': 10.09}, {'connected_gene': 'ENSG00000237718', 'score': 9.88}, {'connected_gene': 'DUS2', 'score': 9.38}, {'connected_gene': 'CTCF', 'score': 2.3}, {'connected_gene': 'DPEP2', 'score': 1.66}, {'connected_gene': 'ENSG00000270165', 'score': 0.34}]
chr16	GH16I067723	67723278	67723467	0.38	[{'connected_gene': 'TSNAXIP1', 'score': 11.31}, {'connected_gene': 'RANBP10', 'score': 11.31}, {'connected_gene': 'PARD6A', 'score': 10.49}, {'connected_gene': 'ACD', 'score': 10.49}, {'connected_gene': 'EDC4', 'score': 10.09}, {'connected_gene': 'GFOD2', 'score': 0.77}, {'connected_gene': 'ENSG00000270165', 'score': 0.37}]
chr16	GH16I067731	67731838	67731987	0.2	[{'connected_gene': 'TSNAXIP1', 'score': 11.25}, {'connected_gene': 'RANBP10', 'score': 11.25}, {'connected_gene': 'ENSG00000237718', 'score': 10.03}, {'connected_gene': 'NRN1L', 'score': 9.7}, {'connected_gene': 'ENSG00000270165', 'score': 0.44}, {'connected_gene': 'GFOD2', 'score': 0.39}]
chr16	GH16I067772	67772914	67774547	0.99	[{'connected_gene': 'DUS2', 'score': 20.43}, {'connected_gene': 'GFOD2', 'score': 11.75}, {'connected_gene': 'RANBP10', 'score': 11.48}, {'connected_gene': 'TSNAXIP1', 'score': 11.48}, {'connected_gene': 'THAP11', 'score': 10.91}, {'connected_gene': 'CENPT', 'score': 10.9}, {'connected_gene': 'PARD6A', 'score': 10.64}, {'connected_gene': 'ACD', 'score': 10.64}, {'connected_gene': 'EDC4', 'score': 10.36}, {'connected_gene': 'CARMIL2', 'score': 10.19}, {'connected_gene': 'RIPOR1', 'score': 10.02}, {'connected_gene': 'DPEP3', 'score': 9.7}, {'connected_gene': 'ENSG00000237718', 'score': 9.54}, {'connected_gene': 'DDX28', 'score': 9.28}, {'connected_gene': 'ENSG00000270165', 'score': 0.29}]
chr16	GH16I068068	68068875	68073171	1.18	[{'connected_gene': 'DUS2', 'score': 24.06}, {'connected_gene': 'PRMT7', 'score': 12.35}, {'connected_gene': 'DPEP3', 'score': 10.98}, {'connected_gene': 'THAP11', 'score': 10.93}, {'connected_gene': 'DDX28', 'score': 10.88}, {'connected_gene': 'RNU6-359P', 'score': 10.72}, {'connected_gene': 'EDC4', 'score': 10.32}, {'connected_gene': 'CENPT', 'score': 10.29}, {'connected_gene': 'DPEP2', 'score': 9.0}, {'connected_gene': 'RANBP10', 'score': 5.83}, {'connected_gene': 'GFOD2', 'score': 3.82}, {'connected_gene': 'NFATC3', 'score': 2.16}, {'connected_gene': 'ACD', 'score': 1.45}, {'connected_gene': 'ENSG00000261864', 'score': 0.44}]
chr16	GH16I067684	67684838	67684947	0.72	[{'connected_gene': 'PARD6A', 'score': 11.43}, {'connected_gene': 'ACD', 'score': 11.43}, {'connected_gene': 'GFOD2', 'score': 11.01}, {'connected_gene': 'ENSG00000237718', 'score': 10.95}, {'connected_gene': 'CARMIL2', 'score': 10.79}, {'connected_gene': 'TSNAXIP1', 'score': 10.76}, {'connected_gene': 'RANBP10', 'score': 10.76}, {'connected_gene': 'PIR36768', 'score': 0.77}]
chr16	GH16I067703	67703524	67704093	0.31	[{'connected_gene': 'PARD6A', 'score': 10.99}, {'connected_gene': 'ACD', 'score': 10.99}, {'connected_gene': 'RANBP10', 'score': 10.45}, {'connected_gene': 'TSNAXIP1', 'score': 10.45}, {'connected_gene': 'RIPOR1', 'score': 10.44}, {'connected_gene': 'CARMIL2', 'score': 10.43}, {'connected_gene': 'THAP11', 'score': 10.33}, {'connected_gene': 'CENPT', 'score': 10.33}, {'connected_gene': 'PSKH1', 'score': 10.27}, {'connected_gene': 'ENSG00000237718', 'score': 10.27}, {'connected_gene': 'NRN1L', 'score': 10.01}, {'connected_gene': 'NFATC3', 'score': 8.65}, {'connected_gene': 'DPEP2', 'score': 8.42}, {'connected_gene': 'GFOD2', 'score': 0.37}, {'connected_gene': 'PIR36768', 'score': 0.34}]
chr16	GH16I067697	67697513	67698372	0.4	[{'connected_gene': 'PARD6A', 'score': 11.01}, {'connected_gene': 'ACD', 'score': 11.01}, {'connected_gene': 'PRMT7', 'score': 10.98}, {'connected_gene': 'RIPOR1', 'score': 10.45}, {'connected_gene': 'RANBP10', 'score': 10.45}, {'connected_gene': 'TSNAXIP1', 'score': 10.45}, {'connected_gene': 'CARMIL2', 'score': 10.44}, {'connected_gene': 'CENPT', 'score': 10.33}, {'connected_gene': 'THAP11', 'score': 10.33}, {'connected_gene': 'ENSG00000237718', 'score': 10.28}, {'connected_gene': 'PSKH1', 'score': 10.26}, {'connected_gene': 'NRN1L', 'score': 10.01}, {'connected_gene': 'DUS2', 'score': 9.4}, {'connected_gene': 'NFATC3', 'score': 8.66}, {'connected_gene': 'PIR36768', 'score': 0.37}, {'connected_gene': 'GFOD2', 'score': 0.34}]
chr16	GH16I067676	67676355	67679116	1.01	[{'connected_gene': 'CARMIL2', 'score': 11.5}, {'connected_gene': 'ENSG00000237718', 'score': 11.17}, {'connected_gene': 'GFOD2', 'score': 10.5}, {'connected_gene': 'LRRC36', 'score': 9.96}, {'connected_gene': 'DUS2', 'score': 9.84}, {'connected_gene': 'DPEP2', 'score': 8.51}, {'connected_gene': 'PIR62194', 'score': 0.77}, {'connected_gene': 'PIR36768', 'score': 0.77}]
chr16	GH16I068655	68655901	68661722	1.24	[{'connected_gene': 'CDH3', 'score': 12.48}, {'connected_gene': 'ENSG00000252640', 'score': 12.4}, {'connected_gene': 'ENSG00000252040', 'score': 12.4}, {'connected_gene': 'RNU4-36P', 'score': 11.21}, {'connected_gene': 'ZFP90', 'score': 9.88}, {'connected_gene': 'GFOD2', 'score': 4.02}, {'connected_gene': 'PRMT7', 'score': 3.99}, {'connected_gene': 'LOC100418868', 'score': 0.44}, {'connected_gene': 'HSPE1P5', 'score': 0.31}]
chr16	GH16I067672	67672298	67675161	1.22	[{'connected_gene': 'PIR62194', 'score': 550.77}, {'connected_gene': 'PRMT7', 'score': 10.52}, {'connected_gene': 'GFOD2', 'score': 10.48}, {'connected_gene': 'HSD11B2', 'score': 4.11}, {'connected_gene': 'PIR36768', 'score': 0.44}]
chr16	GH16I067890	67890078	67891255	0.89	[{'connected_gene': 'GC16P067891', 'score': 550.77}, {'connected_gene': 'GC16M067888', 'score': 550.77}, {'connected_gene': 'PRMT7', 'score': 21.97}, {'connected_gene': 'EDC4', 'score': 11.95}, {'connected_gene': 'HSF4', 'score': 11.01}, {'connected_gene': 'KIAA0895L', 'score': 10.14}, {'connected_gene': 'GFOD2', 'score': 4.42}, {'connected_gene': 'GC16P067888', 'score': 0.77}]