PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000595838	[[8645125, 8645886], [8649778, 8649938], [8650015, 8650192], [8650339, 8650544], [8651005, 8651135], [8651227, 8651354], [8651441, 8651605], [8651699, 8651780], [8654125, 8654249], [8654335, 8654458], [8654772, 8654875], [8656683, 8656747], [8656841, 8657080]]	[[8645776, 8645886], [8649778, 8649938], [8650015, 8650192], [8650339, 8650544], [8651005, 8651135], [8651227, 8651354], [8651441, 8651605], [8651699, 8651780], [8654125, 8654249], [8654335, 8654458], [8654772, 8654875], [8656683, 8656747], [8656841, 8657046]]
ENST00000270328	[[8645125, 8645886], [8649778, 8649938], [8650015, 8650192], [8650339, 8650544], [8651005, 8651135], [8651227, 8651354], [8651441, 8651605], [8651699, 8651780], [8654125, 8654249], [8654335, 8654469], [8654772, 8654875], [8656683, 8656747], [8656841, 8656987], [8657646, 8657754], [8660645, 8660787], [8660956, 8661103], [8661190, 8661296], [8661425, 8661469], [8661870, 8662016], [8662117, 8662201], [8665811, 8666029], [8668611, 8668768], [8669896, 8670243], [8670507, 8670694], [8673015, 8673183]]	[[8645776, 8645886], [8649778, 8649938], [8650015, 8650192], [8650339, 8650544], [8651005, 8651135], [8651227, 8651354], [8651441, 8651605], [8651699, 8651780], [8654125, 8654249], [8654335, 8654469], [8654772, 8654875], [8656683, 8656747], [8656841, 8656987], [8657646, 8657754], [8660645, 8660787], [8660956, 8661103], [8661190, 8661296], [8661425, 8661469], [8661870, 8662016], [8662117, 8662201], [8665811, 8666029], [8668611, 8668768], [8669896, 8670243], [8670507, 8670595]]
ENST00000593913	[[8645571, 8645886], [8649778, 8649938], [8650015, 8650192], [8650339, 8650544], [8651005, 8651135], [8651227, 8651354], [8651441, 8651605], [8651699, 8651780], [8654125, 8654249], [8654335, 8654469], [8654772, 8654875], [8656683, 8656747], [8656841, 8656987], [8657646, 8657754], [8660656, 8660787], [8660956, 8661103], [8661967, 8662016], [8662117, 8662206], [8665811, 8666029], [8668611, 8668768], [8669896, 8670243], [8670507, 8670664]]	[[8662146, 8662206], [8665811, 8666029], [8668611, 8668768], [8669896, 8670243], [8670507, 8670595]]
ENST00000597188	[[8645610, 8645886], [8649778, 8649938], [8650015, 8650192], [8650339, 8650544], [8651005, 8651135], [8651227, 8651354], [8651441, 8651605], [8651699, 8651780], [8654125, 8654249], [8654335, 8654469], [8654772, 8654875], [8656683, 8656747], [8656841, 8656987], [8657646, 8657754], [8660645, 8660787], [8660956, 8661103], [8661190, 8661296], [8661425, 8661469], [8661870, 8662016], [8662117, 8662201], [8665811, 8666029], [8668611, 8668768], [8669896, 8670243], [8670507, 8670694], [8673015, 8673130], [8675528, 8675585]]	[[8645776, 8645886], [8649778, 8649938], [8650015, 8650192], [8650339, 8650544], [8651005, 8651135], [8651227, 8651354], [8651441, 8651605], [8651699, 8651780], [8654125, 8654249], [8654335, 8654469], [8654772, 8654875], [8656683, 8656747], [8656841, 8656987], [8657646, 8657754], [8660645, 8660787], [8660956, 8661103], [8661190, 8661296], [8661425, 8661469], [8661870, 8662016], [8662117, 8662201], [8665811, 8666029], [8668611, 8668768], [8669896, 8670243], [8670507, 8670595]]
ENST00000596851	[[8649846, 8649938], [8650015, 8650544], [8651005, 8651135], [8651227, 8651354], [8651441, 8651605], [8651699, 8651780], [8654125, 8654249], [8654335, 8654469], [8654772, 8654875], [8656683, 8656747], [8656841, 8656987], [8657646, 8657754], [8660645, 8660787], [8660956, 8661103], [8661190, 8661296], [8661425, 8661469], [8661870, 8662016], [8662117, 8662206], [8665811, 8666029], [8668611, 8668768], [8669896, 8670243], [8670507, 8670694], [8675528, 8675566]]	[[8662146, 8662206], [8665811, 8666029], [8668611, 8668768], [8669896, 8670243], [8670507, 8670595]]
ENST00000596911	[[8651505, 8651605], [8651699, 8651780], [8654125, 8654249], [8654335, 8654575]]	None
ENST00000593826	[[8651539, 8651605], [8651699, 8651780], [8654125, 8654249], [8654335, 8654469], [8654772, 8654875], [8656683, 8656747], [8656841, 8657100]]	[[8654460, 8654469], [8654772, 8654875], [8656683, 8656747], [8656841, 8657046]]
ENST00000596236	[[8654684, 8654875], [8656683, 8656747], [8656841, 8657058]]	None
ENST00000603221	[[8654824, 8654875], [8656683, 8656747], [8656841, 8656987], [8657646, 8658400]]	None
ENST00000601163	[[8656683, 8656747], [8656841, 8656987], [8657646, 8657754], [8660645, 8660787], [8660956, 8661296], [8661425, 8661469], [8661870, 8662016], [8662117, 8662206]]	None
ENST00000601872	[[8660496, 8660787], [8660956, 8661241]]	None
ENST00000596709	[[8662120, 8662206], [8665811, 8666029], [8668611, 8668768], [8669896, 8670243], [8673015, 8673130], [8675528, 8675585]]	None
ENST00000596466	[[8662129, 8662206], [8665811, 8666029], [8668611, 8668768], [8669896, 8670243], [8675528, 8675565]]	None
ENST00000593534	[[8669820, 8670243], [8673015, 8673130], [8675528, 8675620]]	None
NM_001282352	[[8645123, 8645886], [8649778, 8649938], [8650015, 8650192], [8650339, 8650544], [8651005, 8651135], [8651227, 8651354], [8651441, 8651605], [8651699, 8651780], [8654125, 8654249], [8654335, 8654458], [8654772, 8654875], [8656683, 8656747], [8656841, 8657080]]	[[8645776, 8645886], [8649778, 8649938], [8650015, 8650192], [8650339, 8650544], [8651005, 8651135], [8651227, 8651354], [8651441, 8651605], [8651699, 8651780], [8654125, 8654249], [8654335, 8654458], [8654772, 8654875], [8656683, 8656747], [8656841, 8657046]]
NM_030957	[[8645123, 8645886], [8649778, 8649938], [8650015, 8650192], [8650339, 8650544], [8651005, 8651135], [8651227, 8651354], [8651441, 8651605], [8651699, 8651780], [8654125, 8654249], [8654335, 8654469], [8654772, 8654875], [8656683, 8656747], [8656841, 8656987], [8657646, 8657754], [8660645, 8660787], [8660956, 8661103], [8661190, 8661296], [8661425, 8661469], [8661870, 8662016], [8662117, 8662201], [8665811, 8666029], [8668611, 8668768], [8669896, 8670243], [8670507, 8670694], [8673015, 8673130], [8675528, 8675620]]	[[8645776, 8645886], [8649778, 8649938], [8650015, 8650192], [8650339, 8650544], [8651005, 8651135], [8651227, 8651354], [8651441, 8651605], [8651699, 8651780], [8654125, 8654249], [8654335, 8654469], [8654772, 8654875], [8656683, 8656747], [8656841, 8656987], [8657646, 8657754], [8660645, 8660787], [8660956, 8661103], [8661190, 8661296], [8661425, 8661469], [8661870, 8662016], [8662117, 8662201], [8665811, 8666029], [8668611, 8668768], [8669896, 8670243], [8670507, 8670595]]

Promoter

Chrom	Start	End	Description
chr19	8675559	8675612	CAGE_peak_1_at_ADAMTS10_5end
chr19	8675642	8675653	CAGE_peak_2_at_ADAMTS10_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr19	GH19I008608	8608458	8613134	2.3	[{'connected_gene': 'ADAMTS10', 'score': 562.88}, {'connected_gene': 'GC19P008612', 'score': 550.77}, {'connected_gene': 'ZNF266', 'score': 41.89}, {'connected_gene': 'ZNF699', 'score': 40.26}, {'connected_gene': 'ZNF317', 'score': 33.27}, {'connected_gene': 'XAB2', 'score': 33.14}, {'connected_gene': 'ZNF558', 'score': 32.84}, {'connected_gene': 'ZNF559', 'score': 31.21}, {'connected_gene': 'HNRNPM', 'score': 27.85}, {'connected_gene': 'ZNF177', 'score': 23.84}, {'connected_gene': 'ELAVL1', 'score': 21.87}, {'connected_gene': 'ZNF414', 'score': 19.04}, {'connected_gene': 'ENSG00000267510', 'score': 12.59}, {'connected_gene': 'ZNF426', 'score': 10.56}, {'connected_gene': 'MAP2K7', 'score': 10.51}]
chr19	GH19I008591	8591822	8593307	1.83	[{'connected_gene': 'ADAMTS10', 'score': 550.37}, {'connected_gene': 'ENSG00000267986', 'score': 9.75}]
chr19	GH19I008524	8524940	8527338	1.73	[{'connected_gene': 'HNRNPM', 'score': 61.65}, {'connected_gene': 'ELAVL1', 'score': 56.28}, {'connected_gene': 'ZNF558', 'score': 55.35}, {'connected_gene': 'ZNF699', 'score': 54.83}, {'connected_gene': 'ZNF317', 'score': 45.14}, {'connected_gene': 'ZNF266', 'score': 44.62}, {'connected_gene': 'ZNF559', 'score': 35.9}, {'connected_gene': 'XAB2', 'score': 33.73}, {'connected_gene': 'ZNF414', 'score': 29.41}, {'connected_gene': 'ENSG00000269300', 'score': 23.74}, {'connected_gene': 'MYO1F', 'score': 20.4}, {'connected_gene': 'MAP2K7', 'score': 20.29}, {'connected_gene': 'LOC100128428', 'score': 11.79}, {'connected_gene': 'ADAMTS10', 'score': 11.59}, {'connected_gene': 'RPS28', 'score': 4.91}, {'connected_gene': 'ENSG00000268618', 'score': 0.34}]
chr19	GH19I008531	8531986	8532905	0.43	[{'connected_gene': 'MYO1F', 'score': 20.64}, {'connected_gene': 'ADAMTS10', 'score': 11.6}, {'connected_gene': 'ZNF414', 'score': 0.37}, {'connected_gene': 'ENSG00000268618', 'score': 0.37}]
chr19	GH19I008637	8637801	8641251	1.37	[{'connected_gene': 'MYO1F', 'score': 31.26}, {'connected_gene': 'ADAMTS10', 'score': 12.1}, {'connected_gene': 'ACTL9', 'score': 11.65}, {'connected_gene': 'PRAM1', 'score': 5.76}, {'connected_gene': 'LOC100128428', 'score': 4.78}, {'connected_gene': 'LINC01862', 'score': 0.44}, {'connected_gene': 'ENSG00000261866', 'score': 0.28}, {'connected_gene': 'GC19P008677', 'score': 0.28}]
chr19	GH19I008663	8663816	8665004	0.8	[{'connected_gene': 'ACTL9', 'score': 12.92}, {'connected_gene': 'ADAMTS10', 'score': 11.32}, {'connected_gene': 'ZNF559', 'score': 4.2}, {'connected_gene': 'ENSG00000261866', 'score': 0.39}, {'connected_gene': 'GC19P008677', 'score': 0.39}, {'connected_gene': 'LINC01862', 'score': 0.29}]
chr19	GH19I008665	8665781	8667231	0.46	[{'connected_gene': 'ACTL9', 'score': 12.92}, {'connected_gene': 'ADAMTS10', 'score': 11.31}, {'connected_gene': 'ENSG00000261866', 'score': 0.39}, {'connected_gene': 'GC19P008677', 'score': 0.39}, {'connected_gene': 'LINC01862', 'score': 0.28}]
chr19	GH19I008586	8586017	8586186	0.83	[{'connected_gene': 'ZNF266', 'score': 20.84}, {'connected_gene': 'XAB2', 'score': 15.48}, {'connected_gene': 'ZNF699', 'score': 15.16}, {'connected_gene': 'HNRNPM', 'score': 14.2}, {'connected_gene': 'ZNF558', 'score': 14.17}, {'connected_gene': 'ZNF559', 'score': 12.53}, {'connected_gene': 'ZNF317', 'score': 12.26}, {'connected_gene': 'ELAVL1', 'score': 10.45}, {'connected_gene': 'ZNF426', 'score': 10.37}, {'connected_gene': 'ENSG00000267986', 'score': 0.77}, {'connected_gene': 'ADAMTS10', 'score': 0.34}]
chr19	GH19I008580	8580401	8581251	1.11	[{'connected_gene': 'ENSG00000267986', 'score': 550.77}, {'connected_gene': 'MYO1F', 'score': 0.77}, {'connected_gene': 'ADAMTS10', 'score': 0.31}]