PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000306006	[[44051791, 44053619], [44063346, 44063907]]	[[44052150, 44053527]]
ENST00000374446	[[44051791, 44053619], [44063346, 44063469], [44069084, 44069125], [44069987, 44070032]]	[[44052150, 44053527]]
ENST00000426961	[[44051794, 44053619], [44063346, 44063469], [44069987, 44070066]]	[[44052150, 44053527]]
ENST00000535642	[[44051794, 44053619], [44069987, 44070066]]	[[44052150, 44053527]]
ENST00000491188	[[44052976, 44053619], [44069987, 44070045]]	None
NM_005674	[[44051791, 44053619], [44063346, 44063907]]	[[44052150, 44053527]]
NM_001099282	[[44051791, 44053619], [44063346, 44063469], [44069084, 44069125], [44069987, 44070065]]	[[44052150, 44053527]]
NM_001324349	[[44051791, 44053619], [44063346, 44063469], [44069084, 44069125], [44069918, 44070066]]	[[44052150, 44053527]]
NM_001324350	[[44051791, 44053619], [44069084, 44069125], [44069918, 44070066]]	[[44052150, 44053527]]
NM_001324351	[[44051791, 44053619], [44063346, 44063469], [44069918, 44070066]]	[[44052150, 44053527]]
NM_001324348	[[44051791, 44053619], [44069918, 44070066]]	[[44052150, 44053527]]
NM_001324353	[[44051791, 44053619], [44063346, 44063469], [44065621, 44065730], [44069084, 44069125], [44069987, 44070066]]	[[44052150, 44053619], [44063346, 44063469], [44065621, 44065730], [44069084, 44069099]]
NM_001324352	[[44051791, 44053619], [44063342, 44063469], [44069084, 44069125], [44069987, 44070066]]	[[44052150, 44053619], [44063342, 44063376]]
NM_001324347	[[44051791, 44053619], [44069084, 44069125], [44069987, 44070066]]	[[44052150, 44053527]]
NM_001099284	[[44051791, 44053619], [44063346, 44063469], [44069987, 44070066]]	[[44052150, 44053527]]
NM_001099283	[[44051791, 44053619], [44069987, 44070066]]	[[44052150, 44053527]]

Promoter

Chrom	Start	End	Description
chr10	44070016	44070069	CAGE_peak_1_at_ZNF239_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr10	GH10I042781	42781680	42783841	2.14	[{'connected_gene': 'BMS1', 'score': 609.81}, {'connected_gene': 'GC10M042779', 'score': 550.77}, {'connected_gene': 'ZNF32-AS2', 'score': 45.72}, {'connected_gene': 'ENSG00000273008', 'score': 42.03}, {'connected_gene': 'HNRNPF', 'score': 41.87}, {'connected_gene': 'EIF3LP2', 'score': 37.28}, {'connected_gene': 'ZNF32-AS1', 'score': 33.47}, {'connected_gene': 'ZNF37BP', 'score': 30.76}, {'connected_gene': 'ZNF32', 'score': 27.06}, {'connected_gene': 'LOC100130881', 'score': 23.5}, {'connected_gene': 'ZNF239', 'score': 21.23}, {'connected_gene': 'LOC441666', 'score': 15.79}, {'connected_gene': 'ZNF487', 'score': 10.12}, {'connected_gene': 'LINC00839', 'score': 7.02}, {'connected_gene': 'ENSG00000259869', 'score': 6.54}, {'connected_gene': 'GC10M042762', 'score': 0.39}]
chr10	GH10I043572	43572859	43576747	2	[{'connected_gene': 'ZNF239', 'score': 570.17}, {'connected_gene': 'ZNF32-AS2', 'score': 17.66}, {'connected_gene': 'ZNF33B', 'score': 12.49}, {'connected_gene': 'BMS1', 'score': 11.45}, {'connected_gene': 'ZNF32-AS1', 'score': 10.92}, {'connected_gene': 'ZNF487', 'score': 7.27}, {'connected_gene': 'CAP1P2', 'score': 0.29}]
chr10	GH10I043585	43585508	43587702	0.38	[{'connected_gene': 'ZNF239', 'score': 19.02}, {'connected_gene': 'CAP1P2', 'score': 0.37}]
chr10	GH10I043550	43550910	43550968	0.25	[{'connected_gene': 'ZNF239', 'score': 0.34}, {'connected_gene': 'LOC100130881', 'score': 0.31}]
chr10	GH10I043560	43560600	43560659	0.5	[{'connected_gene': 'ZNF239', 'score': 550.39}, {'connected_gene': 'LOC100130881', 'score': 0.28}]
chr10	GH10I043613	43613166	43614491	0.2	[{'connected_gene': 'ZNF32', 'score': 11.36}, {'connected_gene': 'ZNF32-AS2', 'score': 11.07}, {'connected_gene': 'ZNF239', 'score': 7.82}, {'connected_gene': 'ENSG00000229116', 'score': 5.99}, {'connected_gene': 'ZNF485', 'score': 0.44}, {'connected_gene': 'PIR33135', 'score': 0.39}, {'connected_gene': 'GC10M043601', 'score': 0.17}]
chr10	GH10I043594	43594661	43596902	1	[{'connected_gene': 'ZNF487', 'score': 6.69}, {'connected_gene': 'ZNF239', 'score': 5.83}, {'connected_gene': 'CAP1P2', 'score': 0.39}]
chr10	GH10I043392	43392519	43410859	2.83	[{'connected_gene': 'HNRNPF', 'score': 590.81}, {'connected_gene': 'EIF3LP2', 'score': 52.89}, {'connected_gene': 'BMS1', 'score': 52.73}, {'connected_gene': 'ZNF32-AS2', 'score': 46.32}, {'connected_gene': 'HNRNPA3P1', 'score': 44.36}, {'connected_gene': 'ZNF37BP', 'score': 34.94}, {'connected_gene': 'ZNF33B', 'score': 32.19}, {'connected_gene': 'ZNF32-AS1', 'score': 31.5}, {'connected_gene': 'ZNF32', 'score': 20.89}, {'connected_gene': 'LOC105378272', 'score': 16.36}, {'connected_gene': 'ENSG00000273008', 'score': 15.39}, {'connected_gene': 'ZNF239', 'score': 13.19}, {'connected_gene': 'RASGEF1A', 'score': 4.7}, {'connected_gene': 'PIR56810', 'score': 0.39}]
chr10	GH10I043604	43604934	43605411	0.31	[{'connected_gene': 'ZNF485', 'score': 550.77}, {'connected_gene': 'CAP1P2', 'score': 550.77}, {'connected_gene': 'ZNF239', 'score': 6.79}, {'connected_gene': 'ENSG00000229116', 'score': 5.98}, {'connected_gene': 'CSGALNACT2', 'score': 2.1}, {'connected_gene': 'GC10M043601', 'score': 0.15}]
chr10	GH10I043416	43416508	43422578	2.07	[{'connected_gene': 'LOC105378272', 'score': 566.76}, {'connected_gene': 'GC10P043423', 'score': 550.77}, {'connected_gene': 'BMS1', 'score': 25.25}, {'connected_gene': 'ZNF32-AS2', 'score': 13.27}, {'connected_gene': 'EIF3LP2', 'score': 11.15}, {'connected_gene': 'ZNF33B', 'score': 9.86}, {'connected_gene': 'ZNF239', 'score': 4.36}, {'connected_gene': 'ENSG00000259869', 'score': 4.1}, {'connected_gene': 'HNRNPF', 'score': 1.46}, {'connected_gene': 'CSGALNACT2', 'score': 1.4}, {'connected_gene': 'GC10M043420', 'score': 0.77}, {'connected_gene': 'SNORD3J', 'score': 0.77}]
chr10	GH10I042643	42643876	42647808	1.17	[{'connected_gene': 'PIR40268', 'score': 550.77}, {'connected_gene': 'LINC00839', 'score': 19.41}, {'connected_gene': 'ZNF33B', 'score': 15.81}, {'connected_gene': 'ZNF239', 'score': 5.08}, {'connected_gene': 'LOC105378268', 'score': 0.44}, {'connected_gene': 'PIR60642', 'score': 0.44}]
chr10	GH10I043315	43315303	43316352	0.38	[{'connected_gene': 'ENSG00000273008', 'score': 4.74}, {'connected_gene': 'ZNF239', 'score': 4.46}, {'connected_gene': 'LOC105378271', 'score': 0.77}, {'connected_gene': 'RASGEF1A', 'score': 0.25}]
chr10	GH10I042865	42865777	42867550	0.99	[{'connected_gene': 'GC10P042865', 'score': 550.77}, {'connected_gene': 'ZNF32-AS1', 'score': 16.66}, {'connected_gene': 'ZNF32-AS2', 'score': 14.6}, {'connected_gene': 'ENSG00000273008', 'score': 14.29}, {'connected_gene': 'ZNF37BP', 'score': 11.42}, {'connected_gene': 'ZNF239', 'score': 9.93}, {'connected_gene': 'ENSG00000259869', 'score': 8.88}, {'connected_gene': 'BMS1', 'score': 6.25}, {'connected_gene': 'LOC441666', 'score': 5.69}, {'connected_gene': 'ZNF33B', 'score': 5.1}, {'connected_gene': 'LOC101929445', 'score': 0.77}]
chr10	GH10I043384	43384879	43389493	0.81	[{'connected_gene': 'PIR56810', 'score': 550.77}, {'connected_gene': 'LOC105378272', 'score': 28.85}, {'connected_gene': 'HNRNPF', 'score': 22.88}, {'connected_gene': 'HNRNPA3P1', 'score': 20.46}, {'connected_gene': 'EIF3LP2', 'score': 20.04}, {'connected_gene': 'SNORD3J', 'score': 12.86}, {'connected_gene': 'ZNF487', 'score': 12.81}, {'connected_gene': 'RNU7-193P', 'score': 12.01}, {'connected_gene': 'RASGEF1A', 'score': 11.21}, {'connected_gene': 'BMS1', 'score': 9.65}, {'connected_gene': 'ZNF239', 'score': 4.67}, {'connected_gene': 'FXYD4', 'score': 0.37}]