PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000238379	[[116135698, 116136809], [116137732, 116138455]]	[[116135878, 116136634]]
ENST00000374180	[[116135698, 116136809], [116137732, 116137847], [116139008, 116139279]]	[[116135878, 116136634]]
ENST00000485934	[[116136167, 116136809], [116137732, 116137806], [116139008, 116139205]]	None
NM_031219	[[116135695, 116136809], [116137732, 116138341]]	[[116135878, 116136634]]
NM_001304509	[[116135695, 116136809], [116137732, 116137847], [116139008, 116139289]]	[[116135878, 116136634]]
NM_001304510	[[116135695, 116136809], [116137732, 116137806], [116139008, 116139289]]	[[116135878, 116136634]]
NM_001304511	[[116135695, 116136809], [116139008, 116139289]]	[[116135878, 116136634]]

Promoter

Chrom	Start	End	Description
chr9	116139206	116139240	CAGE_peak_2_at_HDHD3_5end
chr9	116139255	116139276	CAGE_peak_1_at_HDHD3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr9	GH09I113372	113372037	113383962	2.46	[{'connected_gene': 'HDHD3', 'score': 571.17}, {'connected_gene': 'PRPF4', 'score': 16.11}, {'connected_gene': 'POLE3', 'score': 11.45}, {'connected_gene': 'C9orf43', 'score': 11.45}, {'connected_gene': 'RNF183', 'score': 11.35}, {'connected_gene': 'ALAD', 'score': 10.52}, {'connected_gene': 'CDC26', 'score': 10.47}, {'connected_gene': 'BSPRY', 'score': 7.36}]
chr9	GH09I113370	113370451	113371305	0.2	[{'connected_gene': 'HDHD3', 'score': 7.0}, {'connected_gene': 'RGS3', 'score': 5.28}, {'connected_gene': 'BSPRY', 'score': 0.34}]
chr9	GH09I113289	113289161	113289310	0.31	[{'connected_gene': 'HDHD3', 'score': 11.41}, {'connected_gene': 'ALAD', 'score': 10.18}, {'connected_gene': 'RNF183', 'score': 0.39}, {'connected_gene': 'PRPF4', 'score': 0.39}, {'connected_gene': 'CDC26', 'score': 0.39}]
chr9	GH09I113356	113356529	113357294	0.56	[{'connected_gene': 'HDHD3', 'score': 20.4}, {'connected_gene': 'WDR31', 'score': 14.73}, {'connected_gene': 'ALAD', 'score': 11.29}, {'connected_gene': 'RNF183', 'score': 10.69}, {'connected_gene': 'POLE3', 'score': 10.49}, {'connected_gene': 'C9orf43', 'score': 10.49}, {'connected_gene': 'BSPRY', 'score': 5.68}]
chr9	GH09I113371	113369078	113369364	1.32	[{'connected_gene': 'BSPRY', 'score': 8.68}, {'connected_gene': 'PRPF4', 'score': 5.44}, {'connected_gene': 'HDHD3', 'score': 0.44}]
chr9	GH09I113343	113343298	113344490	1.22	[{'connected_gene': 'BSPRY', 'score': 31.65}, {'connected_gene': 'HDHD3', 'score': 21.44}, {'connected_gene': 'WDR31', 'score': 17.99}]
chr9	GH09I113369	113369414	113369719	0.95	[{'connected_gene': 'BSPRY', 'score': 5.86}, {'connected_gene': 'FKBP15', 'score': 4.9}, {'connected_gene': 'SLC31A1', 'score': 4.64}, {'connected_gene': 'HDHD3', 'score': 0.44}]
chr9	GH09I113353	113352728	113353233	0.57	[{'connected_gene': 'BSPRY', 'score': 25.64}, {'connected_gene': 'ALAD', 'score': 10.85}, {'connected_gene': 'RNF183', 'score': 10.81}, {'connected_gene': 'HDHD3', 'score': 0.34}]
chr9	GH09I113349	113349110	113351762	2.02	[{'connected_gene': 'BSPRY', 'score': 579.03}, {'connected_gene': 'WDR31', 'score': 17.48}, {'connected_gene': 'ALAD', 'score': 10.83}, {'connected_gene': 'RNF183', 'score': 10.81}, {'connected_gene': 'HDHD3', 'score': 0.31}]
chr9	GH09I113395	113395043	113395880	0.89	[{'connected_gene': 'ALAD', 'score': 0.44}, {'connected_gene': 'HDHD3', 'score': 0.37}]
chr9	GH09I113393	113393247	113393796	0.46	[{'connected_gene': 'ALAD', 'score': 0.44}, {'connected_gene': 'HDHD3', 'score': 0.37}]
chr9	GH09I113390	113390309	113391220	0.2	[{'connected_gene': 'ALAD', 'score': 10.24}, {'connected_gene': 'HDHD3', 'score': 0.39}]
chr9	GH09I113396	113396519	113402181	2.46	[{'connected_gene': 'ALAD', 'score': 561.91}, {'connected_gene': 'RGS3', 'score': 10.16}, {'connected_gene': 'POLE3', 'score': 5.49}, {'connected_gene': 'HDHD3', 'score': 0.34}]
chr9	GH09I113386	113386466	113389858	1.08	[{'connected_gene': 'ALAD', 'score': 12.76}, {'connected_gene': 'POLE3', 'score': 11.5}, {'connected_gene': 'C9orf43', 'score': 11.5}, {'connected_gene': 'RNF183', 'score': 11.33}, {'connected_gene': 'PRPF4', 'score': 10.46}, {'connected_gene': 'CDC26', 'score': 10.46}, {'connected_gene': 'HDHD3', 'score': 5.15}]
chr9	GH09I113354	113352121	113352270	0.54	[{'connected_gene': 'ALAD', 'score': 10.85}, {'connected_gene': 'RNF183', 'score': 10.81}, {'connected_gene': 'BSPRY', 'score': 0.77}, {'connected_gene': 'HDHD3', 'score': 0.34}]
chr9	GH09I113352	113352541	113352690	0.57	[{'connected_gene': 'ALAD', 'score': 10.85}, {'connected_gene': 'RNF183', 'score': 10.81}, {'connected_gene': 'BSPRY', 'score': 0.77}, {'connected_gene': 'HDHD3', 'score': 0.34}]
chr9	GH09I113361	113361541	113361690	0.49	[{'connected_gene': 'ALAD', 'score': 11.36}, {'connected_gene': 'RNF183', 'score': 11.24}, {'connected_gene': 'POLE3', 'score': 10.21}, {'connected_gene': 'C9orf43', 'score': 10.21}, {'connected_gene': 'BSPRY', 'score': 7.36}, {'connected_gene': 'HDHD3', 'score': 0.37}]
chr9	GH09I113365	113365350	113365734	0.31	[{'connected_gene': 'ALAD', 'score': 11.99}, {'connected_gene': 'RNF183', 'score': 11.31}, {'connected_gene': 'C9orf43', 'score': 10.65}, {'connected_gene': 'POLE3', 'score': 10.64}, {'connected_gene': 'CDC26', 'score': 10.37}, {'connected_gene': 'PRPF4', 'score': 10.36}, {'connected_gene': 'BSPRY', 'score': 7.45}, {'connected_gene': 'HDHD3', 'score': 0.39}]
chr9	GH09I113131	113131644	113132006	1.02	[{'connected_gene': 'SLC31A2', 'score': 12.66}, {'connected_gene': 'SLC31A1', 'score': 9.38}, {'connected_gene': 'FKBP15', 'score': 9.38}, {'connected_gene': 'CDC26', 'score': 9.24}, {'connected_gene': 'PRPF4', 'score': 9.24}, {'connected_gene': 'FAM225B', 'score': 8.78}, {'connected_gene': 'HDHD3', 'score': 5.67}, {'connected_gene': 'RGS3', 'score': 2.26}, {'connected_gene': 'SNX30', 'score': 2.18}, {'connected_gene': 'PIR44474', 'score': 0.39}]
chr9	GH09I113186	113186649	113189800	0.8	[{'connected_gene': 'SLC31A1', 'score': 17.63}, {'connected_gene': 'PRPF4', 'score': 14.56}, {'connected_gene': 'SLC31A2', 'score': 11.19}, {'connected_gene': 'FKBP15', 'score': 11.15}, {'connected_gene': 'RNF183', 'score': 10.46}, {'connected_gene': 'BSPRY', 'score': 8.77}, {'connected_gene': 'HDHD3', 'score': 6.06}, {'connected_gene': 'PIR31842', 'score': 0.34}]
chr9	GH09I113137	113137414	113138381	0.85	[{'connected_gene': 'SLC31A1', 'score': 10.58}, {'connected_gene': 'FKBP15', 'score': 10.58}, {'connected_gene': 'PRPF4', 'score': 9.82}, {'connected_gene': 'CDC26', 'score': 9.82}, {'connected_gene': 'HDHD3', 'score': 4.46}, {'connected_gene': 'SLC31A2', 'score': 0.39}, {'connected_gene': 'PIR44474', 'score': 0.37}]
chr9	GH09I113339	113339316	113341000	2.1	[{'connected_gene': 'WDR31', 'score': 555.5}, {'connected_gene': 'PRPF4', 'score': 31.26}, {'connected_gene': 'CDC26', 'score': 15.08}, {'connected_gene': 'BSPRY', 'score': 14.13}, {'connected_gene': 'RNF183', 'score': 11.38}, {'connected_gene': 'RPL32P22', 'score': 11.15}, {'connected_gene': 'ALAD', 'score': 10.57}, {'connected_gene': 'C9orf43', 'score': 9.89}, {'connected_gene': 'POLE3', 'score': 9.88}, {'connected_gene': 'HDHD3', 'score': 4.81}, {'connected_gene': 'PIR31470', 'score': 0.31}, {'connected_gene': 'GC09M113311', 'score': 0.31}]
chr9	GH09I113166	113166531	113167085	0.2	[{'connected_gene': 'PIR31842', 'score': 550.77}, {'connected_gene': 'HDHD3', 'score': 5.88}, {'connected_gene': 'FKBP15', 'score': 0.23}]