PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
NM_003514	[[27860476, 27860963]]	[[27860534, 27860927]]

Promoter

Chrom	Start	End	Description
chr6	27806140	27806160	CAGE_peak_2_at_HIST1H2AK_5end,CAGE_peak_2_at_HIST1H2AM_5end,CAGE_peak_3_at_HIST1H2AG_5end,CAGE_peak_3_at_HIST1H2AH_5end,CAGE_peak_3_at_HIST1H2AI_5end,CAGE_peak_3_at_HIST1H2AL_5end
chr6	27860929	27860940	CAGE_peak_3_at_HIST1H2AK_5end,CAGE_peak_3_at_HIST1H2AM_5end,CAGE_peak_4_at_HIST1H2AG_5end,CAGE_peak_4_at_HIST1H2AH_5end,CAGE_peak_4_at_HIST1H2AI_5end,CAGE_peak_4_at_HIST1H2AL_5end
chr6	27860956	27860973	CAGE_peak_1_at_HIST1H2AG_5end,CAGE_peak_1_at_HIST1H2AH_5end,CAGE_peak_1_at_HIST1H2AI_5end,CAGE_peak_1_at_HIST1H2AK_5end,CAGE_peak_1_at_HIST1H2AL_5end,CAGE_peak_1_at_HIST1H2AM_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr6	GH06I027834	27834081	27840504	2.83	[{'connected_gene': 'HIST1H2BN', 'score': 564.21}, {'connected_gene': 'HIST1H2AK', 'score': 556.57}, {'connected_gene': 'GC06M027849', 'score': 550.77}, {'connected_gene': 'ZKSCAN3', 'score': 76.38}, {'connected_gene': 'ZKSCAN8', 'score': 62.85}, {'connected_gene': 'ZKSCAN4', 'score': 55.78}, {'connected_gene': 'ZSCAN9', 'score': 54.31}, {'connected_gene': 'ZSCAN12', 'score': 42.96}, {'connected_gene': 'HIST1H3J', 'score': 14.24}, {'connected_gene': 'GUSBP2', 'score': 13.36}, {'connected_gene': 'HIST1H2AI', 'score': 12.04}, {'connected_gene': 'HIST1H4J', 'score': 11.9}, {'connected_gene': 'ZNF603P', 'score': 10.46}, {'connected_gene': 'HIST1H2BO', 'score': 10.36}, {'connected_gene': 'HIST1H2BM', 'score': 10.35}, {'connected_gene': 'ZSCAN26', 'score': 10.33}, {'connected_gene': 'ZNF391', 'score': 10.24}, {'connected_gene': 'HIST1H3H', 'score': 9.89}, {'connected_gene': 'ZNF165', 'score': 9.75}, {'connected_gene': 'HIST1H1B', 'score': 9.24}, {'connected_gene': 'HIST1H2AL', 'score': 9.0}, {'connected_gene': 'HIST1H2AM', 'score': 8.19}, {'connected_gene': 'HIST1H2BL', 'score': 7.85}, {'connected_gene': 'HIST1H2AJ', 'score': 7.72}, {'connected_gene': 'HIST1H3I', 'score': 6.76}, {'connected_gene': 'HIST1H4K', 'score': 6.05}, {'connected_gene': 'HIST1H4L', 'score': 5.58}, {'connected_gene': 'ZSCAN31', 'score': 5.09}, {'connected_gene': 'ZNF204P', 'score': 5.08}, {'connected_gene': 'ZNF602P', 'score': 4.08}, {'connected_gene': 'ZNF184', 'score': 1.58}]
chr6	GH06I027887	27887549	27899412	2.61	[{'connected_gene': 'HIST1H2AM', 'score': 555.44}, {'connected_gene': 'HIST1H2BO', 'score': 554.74}, {'connected_gene': 'HIST1H3J', 'score': 554.68}, {'connected_gene': 'PIR62073', 'score': 550.77}, {'connected_gene': 'PIR50251', 'score': 550.77}, {'connected_gene': 'PIR61297', 'score': 550.77}, {'connected_gene': 'PIR45952', 'score': 550.77}, {'connected_gene': 'GC06M028114', 'score': 550.77}, {'connected_gene': 'ZKSCAN8', 'score': 56.48}, {'connected_gene': 'ZKSCAN3', 'score': 55.13}, {'connected_gene': 'ZKSCAN4', 'score': 51.2}, {'connected_gene': 'ZSCAN9', 'score': 50.51}, {'connected_gene': 'ZNF603P', 'score': 36.86}, {'connected_gene': 'ZSCAN12', 'score': 30.11}, {'connected_gene': 'HIST1H4K', 'score': 17.22}, {'connected_gene': 'HIST1H3H', 'score': 15.11}, {'connected_gene': 'HIST1H2BN', 'score': 15.03}, {'connected_gene': 'HIST1H2BL', 'score': 15.02}, {'connected_gene': 'HIST1H2AK', 'score': 14.36}, {'connected_gene': 'HIST1H2AI', 'score': 13.99}, {'connected_gene': 'ZSCAN26', 'score': 10.34}, {'connected_gene': 'HIST1H4PS1', 'score': 9.88}, {'connected_gene': 'OR2B8P', 'score': 7.22}, {'connected_gene': 'ZNF192P1', 'score': 6.86}, {'connected_gene': 'HIST1H2BM', 'score': 5.39}, {'connected_gene': 'ZNF165', 'score': 4.92}, {'connected_gene': 'HIST1H3I', 'score': 4.56}, {'connected_gene': 'ZNF204P', 'score': 4.56}, {'connected_gene': 'HIST1H1B', 'score': 4.26}, {'connected_gene': 'HIST1H2AL', 'score': 4.14}, {'connected_gene': 'ZNF602P', 'score': 4.09}, {'connected_gene': 'HIST1H2AJ', 'score': 3.99}, {'connected_gene': 'ZNF184', 'score': 3.92}, {'connected_gene': 'HIST1H4L', 'score': 3.71}, {'connected_gene': 'HIST1H4J', 'score': 2.98}, {'connected_gene': 'PGBD1', 'score': 1.53}, {'connected_gene': 'ZSCAN31', 'score': 1.19}, {'connected_gene': 'GC06M028115', 'score': 0.77}, {'connected_gene': 'RNU7-26P', 'score': 0.77}]
chr6	GH06I027805	27805755	27818474	2.75	[{'connected_gene': 'HIST1H2AI', 'score': 553.9}, {'connected_gene': 'HIST1H3H', 'score': 553.8}, {'connected_gene': 'HIST1H2BM', 'score': 553.63}, {'connected_gene': 'HIST1H2AJ', 'score': 553.07}, {'connected_gene': 'HIST1H2BL', 'score': 552.9}, {'connected_gene': 'ZKSCAN3', 'score': 32.68}, {'connected_gene': 'ZKSCAN8', 'score': 32.05}, {'connected_gene': 'ZNF603P', 'score': 28.73}, {'connected_gene': 'ZSCAN9', 'score': 21.66}, {'connected_gene': 'ZKSCAN4', 'score': 20.36}, {'connected_gene': 'ZSCAN12', 'score': 12.57}, {'connected_gene': 'ZSCAN26', 'score': 10.33}, {'connected_gene': 'ZNF192P1', 'score': 5.57}, {'connected_gene': 'HIST1H4K', 'score': 5.43}, {'connected_gene': 'ZNF204P', 'score': 5.33}, {'connected_gene': 'HIST1H2BN', 'score': 4.12}, {'connected_gene': 'ZNF602P', 'score': 4.08}, {'connected_gene': 'ENSG00000270326', 'score': 3.75}, {'connected_gene': 'HIST1H2AM', 'score': 3.25}, {'connected_gene': 'HIST1H4J', 'score': 3.18}, {'connected_gene': 'HIST1H2AK', 'score': 2.84}, {'connected_gene': 'HIST1H1B', 'score': 2.74}, {'connected_gene': 'HIST1H2BO', 'score': 2.51}, {'connected_gene': 'HIST1H2AL', 'score': 2.49}, {'connected_gene': 'HIST1H3I', 'score': 2.2}, {'connected_gene': 'HIST1H3J', 'score': 1.92}, {'connected_gene': 'HIST1H4L', 'score': 1.83}, {'connected_gene': 'ZNF184', 'score': 1.66}, {'connected_gene': 'GC06M027817', 'score': 0.77}, {'connected_gene': 'PIR38267', 'score': 0.77}, {'connected_gene': 'GC06P027818', 'score': 0.77}, {'connected_gene': 'HIST1H4PS1', 'score': 0.44}]
chr6	GH06I027687	27687001	27688962	1.56	[{'connected_gene': 'TRI-AAT2-1', 'score': 550.77}, {'connected_gene': 'ZKSCAN8', 'score': 38.85}, {'connected_gene': 'ZSCAN23', 'score': 34.78}, {'connected_gene': 'ZKSCAN3', 'score': 28.01}, {'connected_gene': 'ZSCAN12', 'score': 25.1}, {'connected_gene': 'LINC00240', 'score': 19.44}, {'connected_gene': 'ZSCAN31', 'score': 19.11}, {'connected_gene': 'ENSG00000261839', 'score': 14.35}, {'connected_gene': 'ZNF603P', 'score': 14.25}, {'connected_gene': 'ZNF391', 'score': 14.12}, {'connected_gene': 'ZBED9', 'score': 14.11}, {'connected_gene': 'ZSCAN9', 'score': 12.22}, {'connected_gene': 'PGBD1', 'score': 10.76}, {'connected_gene': 'RNU6-471P', 'score': 10.7}, {'connected_gene': 'ZKSCAN4', 'score': 10.57}, {'connected_gene': 'ZSCAN26', 'score': 4.32}, {'connected_gene': 'VN1R10P', 'score': 4.02}, {'connected_gene': 'ZNF184', 'score': 2.29}, {'connected_gene': 'HIST1H2AM', 'score': 1.9}, {'connected_gene': 'HIST1H3H', 'score': 1.74}, {'connected_gene': 'HIST1H2BO', 'score': 1.6}, {'connected_gene': 'HIST1H2BN', 'score': 1.26}, {'connected_gene': 'TRT-AGT2-2', 'score': 0.77}]
chr6	GH06I027791	27791126	27794747	1.62	[{'connected_gene': 'PIR59071', 'score': 550.77}, {'connected_gene': 'TRQ-CTG6-1', 'score': 550.77}, {'connected_gene': 'GC06M027793', 'score': 550.77}, {'connected_gene': 'ZKSCAN8', 'score': 43.9}, {'connected_gene': 'ZKSCAN3', 'score': 32.49}, {'connected_gene': 'ZSCAN9', 'score': 20.02}, {'connected_gene': 'ZSCAN12', 'score': 16.96}, {'connected_gene': 'ZNF204P', 'score': 16.05}, {'connected_gene': 'ENSG00000271755', 'score': 12.48}, {'connected_gene': 'ZSCAN23', 'score': 12.28}, {'connected_gene': 'PGBD1', 'score': 11.66}, {'connected_gene': 'ZKSCAN4', 'score': 11.32}, {'connected_gene': 'ZNF391', 'score': 10.48}, {'connected_gene': 'ZNF603P', 'score': 9.61}, {'connected_gene': 'ZSCAN26', 'score': 5.68}, {'connected_gene': 'TOB2P1', 'score': 3.64}, {'connected_gene': 'HIST1H2AM', 'score': 1.93}, {'connected_gene': 'HIST1H3H', 'score': 1.72}, {'connected_gene': 'ZNF184', 'score': 1.5}, {'connected_gene': 'HIST1H2BN', 'score': 1.48}, {'connected_gene': 'TRQ-TTG3-3', 'score': 0.77}]