PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000248378	[[3572108, 3572193], [3572391, 3572959]]	[[3572440, 3572773]]
ENST00000397133	[[3572115, 3572306], [3572391, 3572962]]	[[3572440, 3572773]]
NM_031298	[[3572016, 3572193], [3572391, 3572963]]	[[3572440, 3572773]]
NM_001014764	[[3572016, 3572306], [3572391, 3572963]]	[[3572440, 3572773]]

Promoter

Chrom	Start	End	Description
chr17	3572087	3572119	CAGE_peak_1_at_TMEM93_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr17	GH17I003791	3791400	3792200	1.18	[{'connected_gene': 'HASPIN', 'score': 11.98}, {'connected_gene': 'NCBP3', 'score': 11.47}, {'connected_gene': 'EMC6', 'score': 11.22}, {'connected_gene': 'TAX1BP3', 'score': 11.22}, {'connected_gene': 'CTNS', 'score': 2.97}, {'connected_gene': 'ZZEF1', 'score': 2.4}, {'connected_gene': 'P2RX1', 'score': 1.35}, {'connected_gene': 'ITGAE', 'score': 0.44}, {'connected_gene': 'ENSG00000262358', 'score': 0.21}]
chr17	GH17I003759	3759169	3760497	0.52	[{'connected_gene': 'HASPIN', 'score': 12.77}, {'connected_gene': 'NCBP3', 'score': 11.77}, {'connected_gene': 'TAX1BP3', 'score': 11.43}, {'connected_gene': 'EMC6', 'score': 11.43}, {'connected_gene': 'P2RX5', 'score': 11.26}, {'connected_gene': 'ENSG00000262358', 'score': 0.29}, {'connected_gene': 'ITGAE', 'score': 0.26}]
chr17	GH17I003792	3792477	3793075	0.4	[{'connected_gene': 'HASPIN', 'score': 11.98}, {'connected_gene': 'NCBP3', 'score': 11.47}, {'connected_gene': 'TAX1BP3', 'score': 11.22}, {'connected_gene': 'EMC6', 'score': 11.22}, {'connected_gene': 'ITGAE', 'score': 0.44}, {'connected_gene': 'ENSG00000262358', 'score': 0.21}]
chr17	GH17I003789	3789718	3790357	0.2	[{'connected_gene': 'HASPIN', 'score': 12.24}, {'connected_gene': 'NCBP3', 'score': 12.23}, {'connected_gene': 'TAX1BP3', 'score': 11.22}, {'connected_gene': 'EMC6', 'score': 11.22}, {'connected_gene': 'ITGAE', 'score': 0.39}, {'connected_gene': 'ENSG00000262358', 'score': 0.21}]
chr17	GH17I003790	3790401	3790800	0.4	[{'connected_gene': 'HASPIN', 'score': 11.98}, {'connected_gene': 'NCBP3', 'score': 11.46}, {'connected_gene': 'TAX1BP3', 'score': 11.22}, {'connected_gene': 'EMC6', 'score': 11.22}, {'connected_gene': 'ITGAE', 'score': 0.39}, {'connected_gene': 'ENSG00000262358', 'score': 0.21}]
chr17	GH17I003760	3760715	3761761	0.31	[{'connected_gene': 'HASPIN', 'score': 12.58}, {'connected_gene': 'NCBP3', 'score': 11.77}, {'connected_gene': 'TAX1BP3', 'score': 11.43}, {'connected_gene': 'EMC6', 'score': 11.43}, {'connected_gene': 'ENSG00000262358', 'score': 0.29}, {'connected_gene': 'ITGAE', 'score': 0.26}]
chr17	GH17I003678	3678067	3678216	0.59	[{'connected_gene': 'EMC6', 'score': 0.44}, {'connected_gene': 'P2RX5', 'score': 0.37}, {'connected_gene': 'P2RX5-TAX1BP3', 'score': 0.37}]
chr17	GH17I003690	3690078	3698219	2.11	[{'connected_gene': 'P2RX5', 'score': 557.94}, {'connected_gene': 'HASPIN', 'score': 11.39}, {'connected_gene': 'P2RX5-TAX1BP3', 'score': 0.77}, {'connected_gene': 'EMC6', 'score': 0.31}]
chr17	GH17I003681	3681491	3683496	1	[{'connected_gene': 'P2RX5', 'score': 0.39}, {'connected_gene': 'EMC6', 'score': 0.39}, {'connected_gene': 'P2RX5-TAX1BP3', 'score': 0.39}]
chr17	GH17I003689	3689801	3690000	0.57	[{'connected_gene': 'P2RX5', 'score': 0.44}, {'connected_gene': 'P2RX5-TAX1BP3', 'score': 0.44}, {'connected_gene': 'EMC6', 'score': 0.34}]
chr17	GH17I003665	3665838	3670016	2.24	[{'connected_gene': 'TAX1BP3', 'score': 571.94}, {'connected_gene': 'EMC6', 'score': 550.77}, {'connected_gene': 'CTNS', 'score': 16.81}, {'connected_gene': 'P2RX5', 'score': 11.5}, {'connected_gene': 'HASPIN', 'score': 10.62}, {'connected_gene': 'RPL21P125', 'score': 0.77}, {'connected_gene': 'P2RX5-TAX1BP3', 'score': 0.31}]
chr17	GH17I003683	3683760	3683956	0.31	[{'connected_gene': 'CTNS', 'score': 5.25}, {'connected_gene': 'P2RX5', 'score': 0.39}, {'connected_gene': 'P2RX5-TAX1BP3', 'score': 0.39}, {'connected_gene': 'EMC6', 'score': 0.37}]
chr17	GH17I003634	3634583	3637601	2.06	[{'connected_gene': 'CTNS', 'score': 576.52}, {'connected_gene': 'SHPK', 'score': 556.08}, {'connected_gene': 'ENSG00000262304', 'score': 550.77}, {'connected_gene': 'MYBBP1A', 'score': 18.53}, {'connected_gene': 'TAX1BP3', 'score': 16.44}, {'connected_gene': 'LOC105371492', 'score': 13.12}, {'connected_gene': 'ANKFY1', 'score': 12.6}, {'connected_gene': 'EMC6', 'score': 11.4}, {'connected_gene': 'LOC100422717', 'score': 0.37}]