PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000314332	[[26115100, 26115363], [26123742, 26124138]]	[[26123751, 26124132]]
ENST00000396984	[[26123583, 26124154]]	[[26123751, 26124132]]
NM_003526	[[26123694, 26124132]]	[[26123751, 26124132]]

Promoter

Chrom	Start	End	Description
chr6	26124147	26124168	CAGE_peak_1_at_HIST1H2BC_5end,CAGE_peak_1_at_HIST1H2BE_5end,CAGE_peak_1_at_HIST1H2BF_5end,CAGE_peak_1_at_HIST1H2BG_5end,CAGE_peak_1_at_HIST1H2BI_5end
chr6	26199709	26199720	CAGE_peak_5_at_HIST1H2BC_5end,CAGE_peak_5_at_HIST1H2BF_5end,CAGE_peak_5_at_HIST1H2BG_5end,CAGE_peak_5_at_HIST1H2BI_5end,CAGE_peak_6_at_HIST1H2BE_5end
chr6	26199737	26199754	CAGE_peak_2_at_HIST1H2BC_5end,CAGE_peak_2_at_HIST1H2BE_5end,CAGE_peak_2_at_HIST1H2BF_5end,CAGE_peak_2_at_HIST1H2BG_5end,CAGE_peak_2_at_HIST1H2BI_5end
chr6	26216881	26216895	CAGE_peak_6_at_HIST1H2BC_5end,CAGE_peak_6_at_HIST1H2BF_5end,CAGE_peak_6_at_HIST1H2BG_5end,CAGE_peak_6_at_HIST1H2BI_5end,CAGE_peak_7_at_HIST1H2BE_5end
chr6	26216901	26216926	CAGE_peak_4_at_HIST1H2BC_5end,CAGE_peak_4_at_HIST1H2BE_5end,CAGE_peak_4_at_HIST1H2BF_5end,CAGE_peak_4_at_HIST1H2BG_5end,CAGE_peak_4_at_HIST1H2BI_5end
chr6	26273152	26273175	CAGE_peak_3_at_HIST1H2BC_5end,CAGE_peak_3_at_HIST1H2BE_5end,CAGE_peak_3_at_HIST1H2BF_5end,CAGE_peak_3_at_HIST1H2BG_5end,CAGE_peak_3_at_HIST1H2BI_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr6	GH06I026120	26120087	26127861	2.85	[{'connected_gene': 'HIST1H2AC', 'score': 552.85}, {'connected_gene': 'PIR44445', 'score': 550.77}, {'connected_gene': 'HIST1H2BC', 'score': 550.77}, {'connected_gene': 'PIR32750', 'score': 550.77}, {'connected_gene': 'PIR33095', 'score': 550.77}, {'connected_gene': 'ABT1', 'score': 61.93}, {'connected_gene': 'HMGN4', 'score': 48.11}, {'connected_gene': 'BTN2A3P', 'score': 41.78}, {'connected_gene': 'BTN2A1', 'score': 40.03}, {'connected_gene': 'BTN2A2', 'score': 31.27}, {'connected_gene': 'ENSG00000272462', 'score': 28.42}, {'connected_gene': 'NUP50P2', 'score': 22.39}, {'connected_gene': 'BTN3A1', 'score': 13.66}, {'connected_gene': 'BTN3A3', 'score': 10.54}, {'connected_gene': 'HFE', 'score': 9.93}, {'connected_gene': 'HIST1H1D', 'score': 9.92}, {'connected_gene': 'BTN3A2', 'score': 8.7}, {'connected_gene': 'HIST1H1C', 'score': 7.05}, {'connected_gene': 'HIST1H2APS5', 'score': 6.41}, {'connected_gene': 'HIST1H4F', 'score': 2.02}, {'connected_gene': 'HIST1H4E', 'score': 1.89}, {'connected_gene': 'HIST1H1E', 'score': 1.78}, {'connected_gene': 'HIST1H4A', 'score': 1.75}, {'connected_gene': 'HIST1H2BH', 'score': 1.57}, {'connected_gene': 'HIST1H3C', 'score': 1.57}, {'connected_gene': 'HIST1H4B', 'score': 1.49}, {'connected_gene': 'HIST1H2AE', 'score': 1.38}, {'connected_gene': 'HIST1H3F', 'score': 1.36}, {'connected_gene': 'HIST1H2AB', 'score': 1.31}, {'connected_gene': 'HIST1H3A', 'score': 1.3}, {'connected_gene': 'HIST1H4H', 'score': 1.28}, {'connected_gene': 'GC06P025915', 'score': 0.08}]
chr6	GH06I026114	26114861	26116272	0.43	[{'connected_gene': 'ENSG00000272462', 'score': 23.37}, {'connected_gene': 'HIST1H2BD', 'score': 11.52}, {'connected_gene': 'HIST1H1E', 'score': 11.52}, {'connected_gene': 'HFE', 'score': 11.15}, {'connected_gene': 'LARP1P1', 'score': 10.61}, {'connected_gene': 'HIST1H2BE', 'score': 10.58}, {'connected_gene': 'HIST1H1T', 'score': 0.44}, {'connected_gene': 'HIST1H2BC', 'score': 0.44}, {'connected_gene': 'PIR32750', 'score': 0.44}, {'connected_gene': 'GC06P025915', 'score': 0.08}]
chr6	GH06I026118	26118590	26119383	0.93	[{'connected_gene': 'ENSG00000272462', 'score': 13.31}, {'connected_gene': 'BTN3A2', 'score': 8.57}, {'connected_gene': 'PIR32750', 'score': 0.77}, {'connected_gene': 'HIST1H2BC', 'score': 0.77}, {'connected_gene': 'HIST1H1T', 'score': 0.39}, {'connected_gene': 'GC06P025915', 'score': 0.08}]
chr6	GH06I026520	26520065	26523456	1.93	[{'connected_gene': 'GC06P027056', 'score': 550.77}, {'connected_gene': 'TRL-CAG1-7', 'score': 550.77}, {'connected_gene': 'GC06P027047', 'score': 550.77}, {'connected_gene': 'PIR62171', 'score': 550.77}, {'connected_gene': 'HCG11', 'score': 550.77}, {'connected_gene': 'ZNF322', 'score': 26.93}, {'connected_gene': 'LOC102724851', 'score': 25.53}, {'connected_gene': 'HMGN4', 'score': 18.1}, {'connected_gene': 'BTN1A1', 'score': 11.23}, {'connected_gene': 'GUSBP2', 'score': 11.05}, {'connected_gene': 'BTN2A3P', 'score': 9.95}, {'connected_gene': 'HIST1H2APS4', 'score': 9.89}, {'connected_gene': 'HIST1H3G', 'score': 9.89}, {'connected_gene': 'BTN3A3', 'score': 5.58}, {'connected_gene': 'BTN2A1', 'score': 4.08}, {'connected_gene': 'BTN3A2', 'score': 3.72}, {'connected_gene': 'BTN3A1', 'score': 3.59}, {'connected_gene': 'ABT1', 'score': 2.92}, {'connected_gene': 'HIST1H2BC', 'score': 1.39}, {'connected_gene': 'BTN2A2', 'score': 1.36}, {'connected_gene': 'HIST1H2BD', 'score': 1.36}, {'connected_gene': 'HIST1H1E', 'score': 1.32}, {'connected_gene': 'HIST1H1D', 'score': 1.28}, {'connected_gene': 'HIST1H2AC', 'score': 1.26}]