PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000308086	[[72056788, 72058360], [72067982, 72068178], [72070468, 72074419]]	[[72058289, 72058360], [72067982, 72068178], [72070468, 72070888]]
ENST00000547843	[[72058260, 72058360], [72058648, 72059220]]	[[72058289, 72058360], [72058648, 72058736]]
ENST00000551488	[[72059406, 72059514], [72067982, 72068178], [72070468, 72070748]]	[[72068127, 72068178], [72070468, 72070748]]
ENST00000551238	[[72061562, 72061690], [72067982, 72068178], [72070468, 72070721]]	[[72068127, 72068178], [72070468, 72070721]]
NM_031435	[[72057676, 72058360], [72067982, 72068178], [72070468, 72074428]]	[[72058289, 72058360], [72067982, 72068178], [72070468, 72070888]]

Promoter

Chrom	Start	End	Description
chr12	72056684	72056693	CAGE_peak_13_at_THAP2_5end
chr12	72056706	72056717	CAGE_peak_10_at_THAP2_5end
chr12	72056749	72056767	CAGE_peak_6_at_THAP2_5end
chr12	72056773	72056796	CAGE_peak_3_at_THAP2_5end
chr12	72056800	72056834	CAGE_peak_1_at_THAP2_5end
chr12	72056858	72056869	CAGE_peak_14_at_THAP2_5end
chr12	72056897	72056908	CAGE_peak_12_at_THAP2_5end
chr12	72057747	72057854	CAGE_peak_4_at_THAP2_5end
chr12	72058060	72058101	CAGE_peak_5_at_THAP2_5end
chr12	72058102	72058127	CAGE_peak_7_at_THAP2_5end
chr12	72058130	72058189	CAGE_peak_2_at_THAP2_5end
chr12	72061635	72061649	CAGE_peak_21_at_THAP2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr12	GH12I071654	71654469	71656364	0.62	[{'connected_gene': 'TMEM19', 'score': 11.55}, {'connected_gene': 'ENSG00000257515', 'score': 6.39}, {'connected_gene': 'THAP2', 'score': 0.44}, {'connected_gene': 'ZFC3H1', 'score': 0.39}, {'connected_gene': 'ENSG00000212461', 'score': 0.37}]
chr12	GH12I071747	71747101	71747250	0.64	[{'connected_gene': 'TMEM19', 'score': 11.39}, {'connected_gene': 'ZFC3H1', 'score': 11.13}, {'connected_gene': 'THAP2', 'score': 11.12}, {'connected_gene': 'ENSG00000212461', 'score': 10.96}, {'connected_gene': 'RAB21', 'score': 0.44}, {'connected_gene': 'ENSG00000257515', 'score': 0.28}]
chr12	GH12I071650	71650447	71653218	0.56	[{'connected_gene': 'TMEM19', 'score': 11.55}, {'connected_gene': 'ENSG00000257515', 'score': 7.26}, {'connected_gene': 'ZFC3H1', 'score': 5.32}, {'connected_gene': 'THAP2', 'score': 0.39}, {'connected_gene': 'ENSG00000212461', 'score': 0.39}]
chr12	GH12I071658	71658352	71660740	0.2	[{'connected_gene': 'TMEM19', 'score': 11.56}, {'connected_gene': 'ENSG00000212461', 'score': 11.49}, {'connected_gene': 'ENSG00000257515', 'score': 7.32}, {'connected_gene': 'ZFC3H1', 'score': 4.57}, {'connected_gene': 'THAP2', 'score': 0.77}]
chr12	GH12I071753	71753104	71753160	0.89	[{'connected_gene': 'RAB21', 'score': 550.77}, {'connected_gene': 'TMEM19', 'score': 11.42}, {'connected_gene': 'ZFC3H1', 'score': 11.24}, {'connected_gene': 'THAP2', 'score': 11.23}, {'connected_gene': 'ENSG00000212461', 'score': 10.82}, {'connected_gene': 'ENSG00000257515', 'score': 0.26}]
chr12	GH12I071661	71661475	71666229	2.31	[{'connected_gene': 'ZFC3H1', 'score': 550.77}, {'connected_gene': 'THAP2', 'score': 550.77}, {'connected_gene': 'TMEM19', 'score': 10.76}, {'connected_gene': 'ENSG00000257515', 'score': 7.4}]
chr12	GH12I071625	71625973	71627867	1.08	[{'connected_gene': 'ZFC3H1', 'score': 15.67}, {'connected_gene': 'THAP2', 'score': 11.18}, {'connected_gene': 'ENSG00000257515', 'score': 7.14}, {'connected_gene': 'GC12P071640', 'score': 0.39}, {'connected_gene': 'ENSG00000257761', 'score': 0.26}]
chr12	GH12I071607	71607726	71609130	0.2	[{'connected_gene': 'ZFC3H1', 'score': 14.95}, {'connected_gene': 'ENSG00000212461', 'score': 11.56}, {'connected_gene': 'THAP2', 'score': 11.0}, {'connected_gene': 'ENSG00000257515', 'score': 7.11}, {'connected_gene': 'ENSG00000257761', 'score': 0.34}, {'connected_gene': 'GC12P071640', 'score': 0.29}]
chr12	GH12I071667	71667006	71667889	0.31	[{'connected_gene': 'ZFC3H1', 'score': 550.77}, {'connected_gene': 'ENSG00000257515', 'score': 7.42}, {'connected_gene': 'THAP2', 'score': 0.77}]
chr12	GH12I071648	71648976	71650096	0.31	[{'connected_gene': 'ZFC3H1', 'score': 4.47}, {'connected_gene': 'THAP2', 'score': 0.39}, {'connected_gene': 'ENSG00000212461', 'score': 0.39}]
chr12	GH12I071641	71641027	71643329	0.77	[{'connected_gene': 'ZFC3H1', 'score': 11.66}, {'connected_gene': 'ENSG00000257515', 'score': 7.21}, {'connected_gene': 'ENSG00000212461', 'score': 0.77}, {'connected_gene': 'THAP2', 'score': 0.34}]
chr12	GH12I071668	71668375	71669638	0.2	[{'connected_gene': 'ZFC3H1', 'score': 550.77}, {'connected_gene': 'ENSG00000258064', 'score': 0.44}, {'connected_gene': 'THAP2', 'score': 0.44}]
chr12	GH12I071643	71643658	71648841	0.43	[{'connected_gene': 'ZFC3H1', 'score': 15.62}, {'connected_gene': 'ENSG00000257515', 'score': 7.23}, {'connected_gene': 'ENSG00000212461', 'score': 0.44}, {'connected_gene': 'THAP2', 'score': 0.37}]
chr12	GH12I071609	71609729	71611270	0.51	[{'connected_gene': 'ENSG00000212461', 'score': 11.58}, {'connected_gene': 'THAP2', 'score': 11.0}, {'connected_gene': 'ZFC3H1', 'score': 10.99}, {'connected_gene': 'GC12P071640', 'score': 0.31}, {'connected_gene': 'ENSG00000257761', 'score': 0.31}]
chr12	GH12I071671	71671721	71672352	1.03	[{'connected_gene': 'ENSG00000257515', 'score': 6.22}, {'connected_gene': 'TMEM19', 'score': 4.69}, {'connected_gene': 'ZFC3H1', 'score': 0.77}, {'connected_gene': 'ENSG00000258064', 'score': 0.77}, {'connected_gene': 'THAP2', 'score': 0.44}]
chr12	GH12I071638	71638440	71640633	0.57	[{'connected_gene': 'GC12P071640', 'score': 550.77}, {'connected_gene': 'ENSG00000212461', 'score': 550.77}, {'connected_gene': 'ZFC3H1', 'score': 17.04}, {'connected_gene': 'THAP2', 'score': 12.1}, {'connected_gene': 'ENSG00000257515', 'score': 7.19}, {'connected_gene': 'LGR5', 'score': 5.13}]
chr12	GH12I071611	71611673	71613896	0.31	[{'connected_gene': 'ENSG00000212461', 'score': 11.94}, {'connected_gene': 'ZFC3H1', 'score': 11.21}, {'connected_gene': 'THAP2', 'score': 11.13}, {'connected_gene': 'ENSG00000257515', 'score': 7.12}, {'connected_gene': 'GC12P071640', 'score': 0.31}, {'connected_gene': 'ENSG00000257761', 'score': 0.31}]