PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000592875	[[33552045, 33552768], [33552847, 33552870], [33554858, 33555058], [33557372, 33557563], [33558797, 33559241]]	[[33552691, 33552768], [33552847, 33552870], [33554858, 33555058], [33557372, 33557563], [33558797, 33558969]]
ENST00000269194	[[33552596, 33552803], [33554858, 33555058], [33557372, 33557563], [33558797, 33558902]]	[[33555022, 33555058], [33557372, 33557563], [33558797, 33558902]]
ENST00000587873	[[33552644, 33552870], [33554858, 33555058], [33557372, 33557563], [33558797, 33558836]]	[[33555022, 33555058], [33557372, 33557563], [33558797, 33558836]]
ENST00000333234	[[33552747, 33552870], [33554858, 33555058], [33557372, 33557563], [33558797, 33559241]]	[[33555022, 33555058], [33557372, 33557563], [33558797, 33558969]]
ENST00000587719	[[33552643, 33552768], [33552847, 33553303]]	None
ENST00000593210	[[33552675, 33552803], [33553554, 33553611]]	None
NM_001201476	[[33552587, 33552768], [33552847, 33552870], [33554858, 33555058], [33558797, 33559250]]	[[33552691, 33552768], [33552847, 33552870], [33554858, 33555058], [33558797, 33558890]]
NM_031446	[[33552587, 33552768], [33552847, 33552870], [33554858, 33555058], [33557372, 33557563], [33558797, 33559250]]	[[33552691, 33552768], [33552847, 33552870], [33554858, 33555058], [33557372, 33557563], [33558797, 33558969]]
NM_001201474	[[33552587, 33552803], [33554858, 33555058], [33557372, 33557563], [33558797, 33559250]]	[[33555022, 33555058], [33557372, 33557563], [33558797, 33558969]]
NM_001201475	[[33552587, 33552870], [33554858, 33555058], [33557372, 33557563], [33558797, 33559250]]	[[33555022, 33555058], [33557372, 33557563], [33558797, 33558969]]

Promoter

Chrom	Start	End	Description
chr18	33552615	33552665	CAGE_peak_1_at_C18orf21_5end
chr18	33552667	33552684	CAGE_peak_2_at_C18orf21_5end
chr18	33552817	33552839	CAGE_peak_6_at_C18orf21_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr18	GH18I036075	36075478	36076732	1.06	[{'connected_gene': 'ZNF397', 'score': 19.42}, {'connected_gene': 'ELP2', 'score': 13.71}, {'connected_gene': 'RPRD1A', 'score': 13.25}, {'connected_gene': 'ENSG00000268573', 'score': 12.67}, {'connected_gene': 'MOCOS', 'score': 10.74}, {'connected_gene': 'FHOD3', 'score': 10.42}, {'connected_gene': 'ENSG00000267583', 'score': 10.06}, {'connected_gene': 'C18orf21', 'score': 9.98}, {'connected_gene': 'GC18P036078', 'score': 0.77}]
chr18	GH18I036017	36017601	36018001	0.91	[{'connected_gene': 'C18orf21', 'score': 11.16}, {'connected_gene': 'FHOD3', 'score': 10.65}, {'connected_gene': 'MOCOS', 'score': 10.57}, {'connected_gene': 'GC18M035972', 'score': 0.26}, {'connected_gene': 'RPRD1A', 'score': 0.25}]
chr18	GH18I036301	36301674	36302710	0.38	[{'connected_gene': 'C18orf21', 'score': 9.73}, {'connected_gene': 'FHOD3', 'score': 0.77}, {'connected_gene': 'GC18P036374', 'score': 0.19}]
chr18	GH18I035938	35938318	35938467	0.31	[{'connected_gene': 'C18orf21', 'score': 11.71}, {'connected_gene': 'MIR187', 'score': 11.14}, {'connected_gene': 'MIR3929', 'score': 0.77}, {'connected_gene': 'GC18P035965', 'score': 0.31}]
chr18	GH18I035967	35967936	35973780	2.1	[{'connected_gene': 'C18orf21', 'score': 561.08}, {'connected_gene': 'LOC105372066', 'score': 560.46}, {'connected_gene': 'ENSG00000278986', 'score': 550.77}, {'connected_gene': 'ENSG00000268573', 'score': 30.01}, {'connected_gene': 'ZNF397', 'score': 21.84}, {'connected_gene': 'ELP2', 'score': 7.43}, {'connected_gene': 'RPRD1A', 'score': 5.36}, {'connected_gene': 'GC18M035972', 'score': 0.77}, {'connected_gene': 'GC18P035965', 'score': 0.44}]
chr18	GH18I036172	36172372	36173101	0.2	[{'connected_gene': 'ELP2', 'score': 33.31}, {'connected_gene': 'C18orf21', 'score': 9.53}, {'connected_gene': 'LOC791126', 'score': 4.32}, {'connected_gene': 'GC18P036175', 'score': 0.77}, {'connected_gene': 'PIR50550', 'score': 0.37}]
chr18	GH18I036169	36169576	36170323	0.2	[{'connected_gene': 'ELP2', 'score': 33.31}, {'connected_gene': 'C18orf21', 'score': 9.28}, {'connected_gene': 'GC18P036175', 'score': 0.44}, {'connected_gene': 'PIR50550', 'score': 0.39}]
chr18	GH18I036065	36065305	36068187	2.03	[{'connected_gene': 'RPRD1A', 'score': 562.71}, {'connected_gene': 'C18orf21', 'score': 10.24}, {'connected_gene': 'LOC105372066', 'score': 8.89}, {'connected_gene': 'GC18M035972', 'score': 0.16}]
chr18	GH18I036302	36302780	36304131	0.46	[{'connected_gene': 'MOCOS', 'score': 10.57}, {'connected_gene': 'C18orf21', 'score': 9.66}, {'connected_gene': 'FHOD3', 'score': 0.44}, {'connected_gene': 'GC18P036374', 'score': 0.19}]
chr18	GH18I035683	35683157	35683246	0.2	[{'connected_gene': 'GALNT1', 'score': 10.95}, {'connected_gene': 'C18orf21', 'score': 9.68}, {'connected_gene': 'LOC105372065', 'score': 0.44}, {'connected_gene': 'LOC105372064', 'score': 0.39}]
chr18	GH18I035654	35654512	35654571	0.5	[{'connected_gene': 'GALNT1', 'score': 550.19}, {'connected_gene': 'C18orf21', 'score': 9.38}, {'connected_gene': 'LOC105372065', 'score': 0.34}, {'connected_gene': 'ENSG00000266965', 'score': 0.22}]
chr18	GH18I035494	35493946	35494760	0.66	[{'connected_gene': 'ZNF396', 'score': 10.37}, {'connected_gene': 'C18orf21', 'score': 10.13}, {'connected_gene': 'INO80C', 'score': 8.29}, {'connected_gene': 'ENSG00000267140', 'score': 0.77}, {'connected_gene': 'ENSG00000279074', 'score': 0.39}]
chr18	GH18I035487	35487897	35492256	0.92	[{'connected_gene': 'ZNF396', 'score': 10.38}, {'connected_gene': 'C18orf21', 'score': 10.12}, {'connected_gene': 'INO80C', 'score': 6.25}, {'connected_gene': 'ENSG00000279074', 'score': 0.44}, {'connected_gene': 'ENSG00000267140', 'score': 0.44}]
chr18	GH18I035493	35493774	35493940	0.75	[{'connected_gene': 'ZNF396', 'score': 10.37}, {'connected_gene': 'C18orf21', 'score': 10.13}, {'connected_gene': 'INO80C', 'score': 8.29}, {'connected_gene': 'ENSG00000267140', 'score': 0.77}, {'connected_gene': 'ENSG00000279074', 'score': 0.39}]
chr18	GH18I035496	35495201	35495400	0.51	[{'connected_gene': 'ZNF396', 'score': 10.37}, {'connected_gene': 'C18orf21', 'score': 10.13}, {'connected_gene': 'ENSG00000267140', 'score': 0.77}, {'connected_gene': 'INO80C', 'score': 0.77}, {'connected_gene': 'ENSG00000279074', 'score': 0.39}]
chr18	GH18I035825	35825976	35829667	1.23	[{'connected_gene': 'ZNF396', 'score': 6.16}, {'connected_gene': 'RPRD1A', 'score': 4.76}, {'connected_gene': 'C18orf21', 'score': 4.39}, {'connected_gene': 'ZNF24', 'score': 3.65}, {'connected_gene': 'INO80C', 'score': 2.4}, {'connected_gene': 'NRBF2P1', 'score': 0.39}, {'connected_gene': 'ENSG00000267397', 'score': 0.14}]
chr18	GH18I035495	35495482	35498608	2.35	[{'connected_gene': 'INO80C', 'score': 558.31}, {'connected_gene': 'ENSG00000267140', 'score': 550.77}, {'connected_gene': 'ENSG00000268573', 'score': 87.13}, {'connected_gene': 'ZNF397', 'score': 80.97}, {'connected_gene': 'ZSCAN30', 'score': 53.0}, {'connected_gene': 'ELP2', 'score': 48.88}, {'connected_gene': 'RPRD1A', 'score': 29.99}, {'connected_gene': 'C18orf21', 'score': 20.32}, {'connected_gene': 'ZNF271P', 'score': 11.06}, {'connected_gene': 'ZNF396', 'score': 10.37}, {'connected_gene': 'ENSG00000279074', 'score': 0.39}]
chr18	GH18I035949	35949801	35950974	0.98	[{'connected_gene': 'LOC105372066', 'score': 16.53}, {'connected_gene': 'C18orf21', 'score': 11.74}, {'connected_gene': 'RPRD1A', 'score': 4.53}, {'connected_gene': 'GC18P035965', 'score': 0.37}, {'connected_gene': 'MIR3929', 'score': 0.37}]
chr18	GH18I035982	35982103	35984664	0.38	[{'connected_gene': 'LOC105372066', 'score': 11.2}, {'connected_gene': 'C18orf21', 'score': 10.1}, {'connected_gene': 'RPRD1A', 'score': 5.37}, {'connected_gene': 'GC18M035972', 'score': 0.44}]
chr18	GH18I035939	35938983	35939926	0.43	[{'connected_gene': 'LOC105372066', 'score': 19.59}, {'connected_gene': 'C18orf21', 'score': 11.71}, {'connected_gene': 'MIR187', 'score': 11.14}, {'connected_gene': 'MIR3929', 'score': 0.44}, {'connected_gene': 'GC18P035965', 'score': 0.31}]
chr18	GH18I035911	35911801	35912600	0.2	[{'connected_gene': 'LOC105372066', 'score': 13.5}, {'connected_gene': 'C18orf21', 'score': 10.61}, {'connected_gene': 'MIR187', 'score': 0.44}, {'connected_gene': 'MIR3929', 'score': 0.34}]
chr18	GH18I035934	35934058	35934307	0.68	[{'connected_gene': 'MIR3929', 'score': 550.77}, {'connected_gene': 'LOC105372066', 'score': 19.13}, {'connected_gene': 'MIR187', 'score': 11.96}, {'connected_gene': 'C18orf21', 'score': 10.49}, {'connected_gene': 'RPRD1A', 'score': 4.12}, {'connected_gene': 'GC18P035965', 'score': 0.29}]
chr18	GH18I036094	36094224	36095572	0.46	[{'connected_gene': 'ENSG00000268573', 'score': 16.13}, {'connected_gene': 'ZNF397', 'score': 12.09}, {'connected_gene': 'FHOD3', 'score': 10.68}, {'connected_gene': 'MOCOS', 'score': 10.63}, {'connected_gene': 'LOC105372066', 'score': 10.21}, {'connected_gene': 'C18orf21', 'score': 10.0}, {'connected_gene': 'ELP2', 'score': 6.93}, {'connected_gene': 'RPRD1A', 'score': 5.08}, {'connected_gene': 'GC18M036078', 'score': 0.37}]
chr18	GH18I035289	35289144	35291444	2.1	[{'connected_gene': 'ENSG00000268573', 'score': 573.92}, {'connected_gene': 'ZSCAN30', 'score': 555.26}, {'connected_gene': 'ZNF271P', 'score': 550.77}, {'connected_gene': 'ZNF397', 'score': 31.34}, {'connected_gene': 'C18orf21', 'score': 12.57}, {'connected_gene': 'ZNF24', 'score': 8.02}, {'connected_gene': 'GC18M035301', 'score': 0.39}, {'connected_gene': 'PIR53427', 'score': 0.39}]