PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000525116	[[104813592, 104813700], [104815474, 104815578], [104817809, 104817919], [104819259, 104819621]]	None
ENST00000444739	[[104813592, 104813700], [104815474, 104815578], [104817809, 104817919], [104819259, 104819403], [104820269, 104820504], [104821651, 104821825], [104822622, 104822732], [104825473, 104825728], [104839245, 104840163]]	[[104815479, 104815578], [104817809, 104817919], [104819259, 104819403], [104820269, 104820504], [104821651, 104821825], [104822622, 104822732], [104825473, 104825728], [104839245, 104839252]]
ENST00000393150	[[104813594, 104813700], [104815474, 104815578], [104817809, 104817919], [104819259, 104819403], [104820269, 104820504], [104821651, 104821825], [104822622, 104822732], [104825473, 104825728], [104827323, 104827425]]	[[104815479, 104815578], [104817809, 104817919], [104819259, 104819403], [104820269, 104820504], [104821651, 104821825], [104822622, 104822732], [104825473, 104825567]]
ENST00000533252	[[104813595, 104813700], [104817809, 104817919]]	[[104813595, 104813700], [104817809, 104817919]]
ENST00000529565	[[104813596, 104815578], [104817809, 104820504], [104821651, 104821719]]	None
ENST00000530309	[[104813599, 104813700], [104815474, 104815578], [104817809, 104818085]]	None
ENST00000533730	[[104815479, 104815578], [104817809, 104817919], [104819259, 104819403], [104820269, 104820504], [104821651, 104821825], [104822622, 104822790], [104825473, 104825728], [104839245, 104839274]]	None
ENST00000534356	[[104817350, 104817919], [104819259, 104819461]]	None
ENST00000529183	[[104819328, 104819403], [104820269, 104820504], [104825473, 104825728], [104839245, 104839292]]	None
ENST00000524843	[[104820128, 104820504], [104821651, 104821825], [104822622, 104822732], [104825473, 104825728], [104839245, 104839308]]	None
ENST00000531333	[[104820387, 104820504], [104821651, 104821825], [104825473, 104825728], [104839245, 104839366]]	None
ENST00000417440	[[104821754, 104821825], [104822622, 104822732], [104825473, 104825728], [104839245, 104839455], [104839976, 104840093]]	[[104821754, 104821825], [104822622, 104822732], [104825473, 104825728], [104839245, 104839252]]
ENST00000531546	[[104822123, 104822732], [104825473, 104825728], [104839245, 104839302]]	None
NM_033306	[[104813593, 104813700], [104815474, 104815578], [104817809, 104817919], [104819259, 104819403], [104820269, 104820504], [104821651, 104821825], [104822622, 104822732], [104825473, 104825728], [104827323, 104827422], [104839245, 104839259]]	[[104815479, 104815578], [104817809, 104817919], [104819259, 104819403], [104820269, 104820504], [104821651, 104821825], [104822622, 104822732], [104825473, 104825567]]
NM_001225	[[104813593, 104813700], [104815474, 104815578], [104817809, 104817919], [104819259, 104819403], [104820269, 104820504], [104821651, 104821825], [104822622, 104822732], [104825473, 104825728], [104839245, 104839325]]	[[104815479, 104815578], [104817809, 104817919], [104819259, 104819403], [104820269, 104820504], [104821651, 104821825], [104822622, 104822732], [104825473, 104825728], [104839245, 104839252]]

Promoter

Chrom	Start	End	Description
chr11	104825675	104825688	CAGE_peak_2_at_CASP4_5end
chr11	104839260	104839327	CAGE_peak_1_at_CASP4_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr11	GH11I104836	104836601	104837197	0.42	[{'connected_gene': 'CASP4', 'score': 15.09}, {'connected_gene': 'CASP5', 'score': 7.34}, {'connected_gene': 'CARD17', 'score': 7.17}, {'connected_gene': 'LOC643733', 'score': 4.58}, {'connected_gene': 'CARD16', 'score': 4.22}, {'connected_gene': 'PIR51559', 'score': 0.34}, {'connected_gene': 'ENSG00000254569', 'score': 0.28}]
chr11	GH11I104875	104875592	104877797	0.89	[{'connected_gene': 'CASP4', 'score': 11.17}, {'connected_gene': 'LOC643733', 'score': 7.16}, {'connected_gene': 'CASP5', 'score': 4.66}, {'connected_gene': 'CARD17', 'score': 2.9}, {'connected_gene': 'CARD16', 'score': 2.56}, {'connected_gene': 'ENSG00000254569', 'score': 0.77}, {'connected_gene': 'CASP12', 'score': 0.34}]
chr11	GH11I104965	104965298	104970176	2.08	[{'connected_gene': 'CASP4', 'score': 575.62}, {'connected_gene': 'LOC643733', 'score': 16.48}, {'connected_gene': 'CASP5', 'score': 11.81}, {'connected_gene': 'CASP12', 'score': 11.38}, {'connected_gene': 'CARD17', 'score': 8.49}, {'connected_gene': 'CARD16', 'score': 7.28}]
chr11	GH11I104956	104956624	104956683	1.07	[{'connected_gene': 'CASP4', 'score': 550.39}, {'connected_gene': 'LOC643733', 'score': 0.28}]
chr11	GH11I104704	104704275	104707886	1.13	[{'connected_gene': 'CASP4', 'score': 12.41}, {'connected_gene': 'CARD17', 'score': 10.26}, {'connected_gene': 'LOC643733', 'score': 6.4}, {'connected_gene': 'CARD16', 'score': 6.11}, {'connected_gene': 'LINC02552', 'score': 6.02}, {'connected_gene': 'CASP5', 'score': 5.19}, {'connected_gene': 'ENSG00000270449', 'score': 0.34}, {'connected_gene': 'PIR54951', 'score': 0.26}]
chr11	GH11I105032	105032452	105036193	2.2	[{'connected_gene': 'CASP1', 'score': 550.77}, {'connected_gene': 'CARD17', 'score': 35.46}, {'connected_gene': 'CASP4', 'score': 14.13}, {'connected_gene': 'CASP5', 'score': 13.37}, {'connected_gene': 'CARD16', 'score': 12.42}, {'connected_gene': 'CASP1P2', 'score': 4.34}]
chr11	GH11I104947	104947034	104947183	0.54	[{'connected_gene': 'LOC643733', 'score': 11.11}, {'connected_gene': 'CASP12', 'score': 11.04}, {'connected_gene': 'CASP4', 'score': 0.34}]
chr11	GH11I104914	104914774	104919132	1.08	[{'connected_gene': 'LOC643733', 'score': 7.77}, {'connected_gene': 'CASP12', 'score': 5.26}, {'connected_gene': 'CASP4', 'score': 5.24}]
chr11	GH11I105208	105208089	105208344	0.32	[{'connected_gene': 'CARD17', 'score': 24.71}, {'connected_gene': 'CASP5', 'score': 6.95}, {'connected_gene': 'CASP4', 'score': 6.35}, {'connected_gene': 'CARD16', 'score': 5.6}, {'connected_gene': 'GRIA4', 'score': 4.14}, {'connected_gene': 'GC11P105198', 'score': 0.39}, {'connected_gene': 'ENSG00000255336', 'score': 0.28}, {'connected_gene': 'LOC105369468', 'score': 0.06}]
chr11	GH11I105189	105189478	105189950	0.4	[{'connected_gene': 'CARD17', 'score': 32.58}, {'connected_gene': 'CASP5', 'score': 12.73}, {'connected_gene': 'CASP4', 'score': 9.54}, {'connected_gene': 'CARD16', 'score': 8.0}, {'connected_gene': 'GC11M105194', 'score': 0.44}, {'connected_gene': 'LOC105369469', 'score': 0.31}, {'connected_gene': 'LOC105369468', 'score': 0.05}]
chr11	GH11I105297	105297492	105297743	0.64	[{'connected_gene': 'CARD17', 'score': 9.55}, {'connected_gene': 'CASP5', 'score': 6.92}, {'connected_gene': 'CASP4', 'score': 4.72}, {'connected_gene': 'CARD16', 'score': 3.37}, {'connected_gene': 'ENSG00000255336', 'score': 0.23}, {'connected_gene': 'ENSG00000278640', 'score': 0.22}, {'connected_gene': 'LOC105369468', 'score': 0.07}]
chr11	GH11I105177	105177337	105178483	0.59	[{'connected_gene': 'CARD17', 'score': 17.85}, {'connected_gene': 'CASP5', 'score': 3.22}, {'connected_gene': 'CARD16', 'score': 2.84}, {'connected_gene': 'CASP4', 'score': 2.75}, {'connected_gene': 'LOC105369469', 'score': 0.37}, {'connected_gene': 'GC11M105194', 'score': 0.37}, {'connected_gene': 'LOC105369468', 'score': 0.05}]
chr11	GH11I105200	105200587	105204144	0.83	[{'connected_gene': 'CARD17', 'score': 5.24}, {'connected_gene': 'CASP1', 'score': 4.52}, {'connected_gene': 'CASP4', 'score': 4.24}, {'connected_gene': 'GC11P105198', 'score': 0.77}, {'connected_gene': 'ENSG00000255336', 'score': 0.26}, {'connected_gene': 'LOC105369468', 'score': 0.05}]
chr11	GH11I104688	104688810	104689033	0.27	[{'connected_gene': 'CARD17', 'score': 19.41}, {'connected_gene': 'LOC643733', 'score': 5.52}, {'connected_gene': 'CASP4', 'score': 4.5}, {'connected_gene': 'CARD16', 'score': 3.72}, {'connected_gene': 'CASP5', 'score': 2.62}, {'connected_gene': 'ENSG00000270449', 'score': 0.44}, {'connected_gene': 'LOC105369466', 'score': 0.37}, {'connected_gene': 'PIR54951', 'score': 0.22}]
chr11	GH11I105243	105243239	105246157	1.13	[{'connected_gene': 'CARD17', 'score': 8.15}, {'connected_gene': 'GRIA4', 'score': 4.19}, {'connected_gene': 'CASP1', 'score': 4.16}, {'connected_gene': 'CARD16', 'score': 2.63}, {'connected_gene': 'CASP4', 'score': 2.16}, {'connected_gene': 'CASP5', 'score': 1.44}, {'connected_gene': 'ENSG00000255336', 'score': 0.77}, {'connected_gene': 'GC11P105198', 'score': 0.25}, {'connected_gene': 'LOC105369468', 'score': 0.06}]
chr11	GH11I105039	105039150	105039205	0.23	[{'connected_gene': 'CARD17', 'score': 3.86}, {'connected_gene': 'CARD16', 'score': 3.13}, {'connected_gene': 'CASP4', 'score': 2.36}, {'connected_gene': 'CASP5', 'score': 1.97}, {'connected_gene': 'CASP1', 'score': 0.77}, {'connected_gene': 'CASP1P2', 'score': 0.29}]
chr11	GH11I105219	105219926	105220800	0.73	[{'connected_gene': 'CARD17', 'score': 15.05}, {'connected_gene': 'CARD16', 'score': 6.36}, {'connected_gene': 'CASP4', 'score': 6.16}, {'connected_gene': 'CASP5', 'score': 5.69}, {'connected_gene': 'GC11P105198', 'score': 0.34}, {'connected_gene': 'ENSG00000255336', 'score': 0.31}, {'connected_gene': 'LOC105369468', 'score': 0.05}]
chr11	GH11I104694	104694122	104695343	1.03	[{'connected_gene': 'CARD17', 'score': 16.29}, {'connected_gene': 'CASP12', 'score': 11.11}, {'connected_gene': 'LOC643733', 'score': 11.1}, {'connected_gene': 'CASP4', 'score': 3.77}, {'connected_gene': 'CARD16', 'score': 3.21}, {'connected_gene': 'CASP5', 'score': 2.39}, {'connected_gene': 'ENSG00000270449', 'score': 0.39}, {'connected_gene': 'LOC105369466', 'score': 0.34}, {'connected_gene': 'PIR54951', 'score': 0.23}]
chr11	GH11I105164	105164201	105164656	0.31	[{'connected_gene': 'LOC105369469', 'score': 550.77}, {'connected_gene': 'CARD17', 'score': 16.08}, {'connected_gene': 'CASP5', 'score': 12.55}, {'connected_gene': 'CASP4', 'score': 5.98}, {'connected_gene': 'CASP1P2', 'score': 4.13}, {'connected_gene': 'CARD16', 'score': 4.08}, {'connected_gene': 'GC11M105194', 'score': 0.29}, {'connected_gene': 'LOC105369468', 'score': 0.05}]
chr11	GH11I104934	104934486	104935299	0.31	[{'connected_gene': 'CASP12', 'score': 11.84}, {'connected_gene': 'LOC643733', 'score': 0.37}, {'connected_gene': 'CASP4', 'score': 0.29}]