PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000489171	[[45454854, 45455314], [45465612, 45467296], [45477968, 45478111], [45479469, 45479561], [45480260, 45480418], [45484721, 45484823], [45485117, 45485169], [45486395, 45486517], [45487352, 45487450], [45488716, 45490155]]	None
ENST00000374417	[[45455218, 45455314], [45465612, 45465712], [45467220, 45467296], [45477968, 45478111], [45480260, 45480418], [45484721, 45484823], [45485117, 45485169], [45486395, 45486517], [45487352, 45487450], [45488716, 45490168]]	[[45465650, 45465712], [45467220, 45467296], [45477968, 45478111], [45480260, 45480360]]
ENST00000334940	[[45455218, 45455314], [45465612, 45465712], [45477864, 45477886], [45477968, 45478111], [45479388, 45479561], [45480260, 45480418], [45484721, 45484823], [45485117, 45485169], [45486395, 45486517], [45487352, 45487450], [45488716, 45490168]]	[[45465650, 45465712], [45477864, 45477886], [45477968, 45478111], [45479388, 45479561], [45480260, 45480418], [45484721, 45484823], [45485117, 45485169], [45486395, 45486517], [45487352, 45487450], [45488716, 45488777]]
ENST00000340258	[[45455239, 45455314], [45465612, 45465712], [45467220, 45467296], [45477968, 45478111], [45479469, 45479561], [45480260, 45480418], [45484721, 45484823], [45485117, 45485169], [45486395, 45486517], [45487352, 45487450], [45488716, 45491339]]	[[45465650, 45465712], [45467220, 45467296], [45477968, 45478111], [45479469, 45479561], [45480260, 45480418], [45484721, 45484823], [45485117, 45485169], [45486395, 45486517], [45487352, 45487450], [45488716, 45488777]]
ENST00000483709	[[45455286, 45455314], [45465612, 45465712], [45467220, 45467296], [45476339, 45476375], [45477968, 45478111], [45479469, 45479561], [45480260, 45480418], [45484721, 45484822]]	[[45465650, 45465712], [45467220, 45467296], [45476339, 45476351]]
ENST00000472561	[[45467241, 45467296], [45477968, 45478111], [45480260, 45480418], [45484721, 45484823], [45485117, 45485169], [45486395, 45486517], [45487352, 45487450], [45488716, 45488878]]	None
ENST00000465735	[[45476486, 45478111], [45479469, 45479561], [45480260, 45480418], [45484721, 45484823], [45485117, 45485169], [45486395, 45486517], [45487352, 45487408]]	None
ENST00000471941	[[45478475, 45480418], [45484721, 45484823], [45485117, 45485169], [45486395, 45486517], [45487352, 45487408]]	None
ENST00000471808	[[45480323, 45480418], [45484721, 45484823], [45485064, 45485169], [45486395, 45486503]]	None
ENST00000427758	[[45455278, 45455314], [45465612, 45465712], [45467220, 45467296], [45477968, 45478111], [45479388, 45479561]]	[[45465650, 45465712], [45467220, 45467296], [45477968, 45478111], [45479388, 45479561]]
ENST00000462822	[[45465616, 45465712], [45467220, 45467296], [45477972, 45478111], [45479317, 45479360]]	None
ENST00000428466	[[45465671, 45465712], [45467220, 45467296], [45477968, 45478111], [45478357, 45478532]]	[[45465671, 45465712], [45467220, 45467296], [45477968, 45478111], [45478357, 45478469]]
ENST00000484477	[[45484780, 45484823], [45485117, 45485169], [45486395, 45486791]]	[[45484780, 45484823], [45485117, 45485169], [45486395, 45486553]]
ENST00000493490	[[45485985, 45486276], [45486395, 45486517], [45487352, 45487418]]	None
NM_032023	[[45455218, 45455314], [45465612, 45465712], [45467220, 45467296], [45477968, 45478111], [45479469, 45479561], [45480260, 45480418], [45484721, 45484823], [45485117, 45485169], [45486395, 45486517], [45487352, 45487450], [45488716, 45490172]]	[[45465650, 45465712], [45467220, 45467296], [45477968, 45478111], [45479469, 45479561], [45480260, 45480418], [45484721, 45484823], [45485117, 45485169], [45486395, 45486517], [45487352, 45487450], [45488716, 45488777]]

Promoter

Chrom	Start	End	Description
chr10	45455207	45455263	CAGE_peak_1_at_RASSF4_5end
chr10	45476058	45476069	CAGE_peak_5_at_RASSF4_5end
chr10	45477877	45477901	CAGE_peak_2_at_RASSF4_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr10	GH10I044957	44957669	44969963	2.52	[{'connected_gene': 'RASSF4', 'score': 558.78}, {'connected_gene': 'WASHC2C', 'score': 36.95}, {'connected_gene': 'TMEM72-AS1', 'score': 24.31}, {'connected_gene': 'ZNF22', 'score': 16.47}, {'connected_gene': 'AGAP4', 'score': 15.32}, {'connected_gene': 'C10orf25', 'score': 13.01}, {'connected_gene': 'ENSG00000223462', 'score': 12.97}, {'connected_gene': 'ENSG00000234504', 'score': 11.77}, {'connected_gene': 'TMEM72', 'score': 10.31}, {'connected_gene': 'CEP164P1', 'score': 6.66}, {'connected_gene': 'ALOX5', 'score': 2.41}, {'connected_gene': 'OR13A1', 'score': 1.49}, {'connected_gene': 'ENSG00000273363', 'score': 0.77}, {'connected_gene': 'GC10M044957', 'score': 0.77}, {'connected_gene': 'LOC105378281', 'score': 0.44}]
chr10	GH10I044925	44925474	44925879	0.74	[{'connected_gene': 'RASSF4', 'score': 11.04}, {'connected_gene': 'TMEM72-AS1', 'score': 11.04}, {'connected_gene': 'ZNF22', 'score': 10.94}, {'connected_gene': 'C10orf25', 'score': 10.93}, {'connected_gene': 'TMEM72', 'score': 1.78}, {'connected_gene': 'ALOX5', 'score': 1.17}, {'connected_gene': 'ENSG00000234504', 'score': 0.44}, {'connected_gene': 'ENSG00000223462', 'score': 0.39}]
chr10	GH10I044927	44927060	44928020	0.85	[{'connected_gene': 'RASSF4', 'score': 11.55}, {'connected_gene': 'TMEM72-AS1', 'score': 11.55}, {'connected_gene': 'C10orf25', 'score': 10.94}, {'connected_gene': 'ZNF22', 'score': 10.94}, {'connected_gene': 'TMEM72', 'score': 10.0}, {'connected_gene': 'ALOX5', 'score': 1.33}, {'connected_gene': 'ENSG00000234504', 'score': 0.44}, {'connected_gene': 'ENSG00000223462', 'score': 0.44}]
chr10	GH10I044940	44940213	44940362	0.85	[{'connected_gene': 'RASSF4', 'score': 4.57}, {'connected_gene': 'ENSG00000223462', 'score': 0.77}, {'connected_gene': 'TMEM72-AS1', 'score': 0.37}]
chr10	GH10I044945	44945708	44950936	1.22	[{'connected_gene': 'TMEM72', 'score': 20.24}, {'connected_gene': 'C10orf25', 'score': 10.9}, {'connected_gene': 'ZNF22', 'score': 10.9}, {'connected_gene': 'RASSF4', 'score': 7.14}, {'connected_gene': 'ENSG00000227683', 'score': 5.25}, {'connected_gene': 'TMEM72-AS1', 'score': 4.68}, {'connected_gene': 'RSU1P2', 'score': 4.58}, {'connected_gene': 'ALOX5', 'score': 4.33}, {'connected_gene': 'ENSG00000223462', 'score': 0.39}]
chr10	GH10I044932	44932553	44933200	1.03	[{'connected_gene': 'TMEM72-AS1', 'score': 16.29}, {'connected_gene': 'RASSF4', 'score': 11.77}, {'connected_gene': 'C10orf25', 'score': 10.88}, {'connected_gene': 'ZNF22', 'score': 10.88}, {'connected_gene': 'ENSG00000223462', 'score': 0.77}, {'connected_gene': 'ENSG00000234504', 'score': 0.39}, {'connected_gene': 'TMEM72', 'score': 0.34}]
chr10	GH10I044926	44925273	44925462	0.65	[{'connected_gene': 'TMEM72-AS1', 'score': 11.04}, {'connected_gene': 'RASSF4', 'score': 11.04}, {'connected_gene': 'C10orf25', 'score': 10.93}, {'connected_gene': 'ZNF22', 'score': 10.93}, {'connected_gene': 'ENSG00000234504', 'score': 0.44}, {'connected_gene': 'TMEM72', 'score': 0.39}, {'connected_gene': 'ENSG00000223462', 'score': 0.39}]
chr10	GH10I044952	44952278	44953907	0.75	[{'connected_gene': 'TMEM72-AS1', 'score': 12.95}, {'connected_gene': 'RASSF4', 'score': 4.91}, {'connected_gene': 'AGAP4', 'score': 4.64}, {'connected_gene': 'ENSG00000223462', 'score': 0.37}]
chr10	GH10I044955	44955632	44956543	0.51	[{'connected_gene': 'TMEM72-AS1', 'score': 17.04}, {'connected_gene': 'RASSF4', 'score': 5.83}, {'connected_gene': 'ENSG00000223462', 'score': 0.37}]
chr10	GH10I044956	44956801	44957000	0.63	[{'connected_gene': 'TMEM72-AS1', 'score': 0.77}, {'connected_gene': 'RASSF4', 'score': 0.77}, {'connected_gene': 'ENSG00000223462', 'score': 0.37}]
chr10	GH10I044999	44999307	45002772	2.19	[{'connected_gene': 'C10orf25', 'score': 568.22}, {'connected_gene': 'ZNF22', 'score': 559.88}, {'connected_gene': 'PIR48571', 'score': 550.77}, {'connected_gene': 'PIR53385', 'score': 550.77}, {'connected_gene': 'PARGP1', 'score': 28.36}, {'connected_gene': 'WASHC2C', 'score': 18.54}, {'connected_gene': 'ENSG00000273363', 'score': 12.1}, {'connected_gene': 'FAM21FP', 'score': 10.43}, {'connected_gene': 'RASSF4', 'score': 5.48}, {'connected_gene': 'AGAP4', 'score': 4.29}, {'connected_gene': 'MARCH8', 'score': 4.06}, {'connected_gene': 'GC10P045025', 'score': 0.34}, {'connected_gene': 'CEP164P1', 'score': 0.18}]
chr10	GH10I044989	44989117	44998800	1.64	[{'connected_gene': 'C10orf25', 'score': 17.68}, {'connected_gene': 'ENSG00000223462', 'score': 12.45}, {'connected_gene': 'DEPP1', 'score': 7.81}, {'connected_gene': 'PIR39907', 'score': 0.77}, {'connected_gene': 'GC10M045017', 'score': 0.77}, {'connected_gene': 'PIR53874', 'score': 0.77}, {'connected_gene': 'RASSF4', 'score': 0.29}]
chr10	GH10I044971	44971395	44988290	2.8	[{'connected_gene': 'DEPP1', 'score': 550.77}, {'connected_gene': 'PIR49011', 'score': 550.77}, {'connected_gene': 'C10orf25', 'score': 25.84}, {'connected_gene': 'ZNF22', 'score': 21.09}, {'connected_gene': 'TMEM72-AS1', 'score': 18.58}, {'connected_gene': 'RASSF4', 'score': 17.48}, {'connected_gene': 'FAM21FP', 'score': 13.13}, {'connected_gene': 'ENSG00000223462', 'score': 12.49}, {'connected_gene': 'ENSG00000234504', 'score': 11.31}, {'connected_gene': 'WASHC2C', 'score': 10.81}, {'connected_gene': 'TMEM72', 'score': 10.31}, {'connected_gene': 'CEP164P1', 'score': 7.18}, {'connected_gene': 'PIR39907', 'score': 0.37}]
chr10	GH10I044969	44969973	44970122	0.4	[{'connected_gene': 'LOC105378281', 'score': 550.77}, {'connected_gene': 'ENSG00000223462', 'score': 12.24}, {'connected_gene': 'C10orf25', 'score': 11.7}, {'connected_gene': 'ZNF22', 'score': 11.7}, {'connected_gene': 'TMEM72', 'score': 10.3}, {'connected_gene': 'TMEM72-AS1', 'score': 0.39}, {'connected_gene': 'RASSF4', 'score': 0.39}]
chr10	GH10I044934	44934644	44937067	1.09	[{'connected_gene': 'ENSG00000223462', 'score': 550.77}, {'connected_gene': 'TMEM72', 'score': 7.74}, {'connected_gene': 'RASSF4', 'score': 4.57}, {'connected_gene': 'ENSG00000234504', 'score': 0.37}, {'connected_gene': 'TMEM72-AS1', 'score': 0.34}]
chr10	GH10I044943	44943913	44944289	0.39	[{'connected_gene': 'ENSG00000223462', 'score': 0.44}, {'connected_gene': 'TMEM72-AS1', 'score': 0.37}, {'connected_gene': 'RASSF4', 'score': 0.37}]
chr10	GH10I044939	44939024	44939295	0.61	[{'connected_gene': 'ENSG00000223462', 'score': 550.77}, {'connected_gene': 'AGAP4', 'score': 14.33}, {'connected_gene': 'AGAP10P', 'score': 10.26}, {'connected_gene': 'RASSF4', 'score': 6.36}, {'connected_gene': 'ALOX5', 'score': 3.23}, {'connected_gene': 'OR13A1', 'score': 1.64}, {'connected_gene': 'TMEM72-AS1', 'score': 0.34}]