PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000587522	[[19623226, 19623351], [19624963, 19626357]]	[[19625414, 19626236]]
ENST00000360913	[[19623229, 19623547], [19624643, 19626838]]	[[19625414, 19626236]]
ENST00000602623	[[19623264, 19623351], [19624953, 19625744]]	[[19625414, 19625744]]
ENST00000585580	[[19625027, 19626494]]	[[19625414, 19626236]]
NM_032037	[[19625027, 19626469]]	[[19625414, 19626236]]

Promoter

Chrom	Start	End	Description
chr19	19626086	19626104	CAGE_peak_5_at_TSSK6_5end
chr19	19626351	19626365	CAGE_peak_2_at_TSSK6_5end
chr19	19626951	19626991	CAGE_peak_1_at_TSSK6_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr19	GH19I019514	19514592	19514741	0.43	[{'connected_gene': 'TSSK6', 'score': 550.77}, {'connected_gene': 'ENSG00000258674', 'score': 550.77}, {'connected_gene': 'NDUFA13', 'score': 550.77}, {'connected_gene': 'PIR50534', 'score': 550.77}, {'connected_gene': 'GATAD2A', 'score': 14.65}, {'connected_gene': 'GC19M019509', 'score': 0.77}]
chr19	GH19I019516	19514392	19514541	0.38	[{'connected_gene': 'TSSK6', 'score': 550.77}, {'connected_gene': 'ENSG00000258674', 'score': 550.77}, {'connected_gene': 'NDUFA13', 'score': 550.77}, {'connected_gene': 'PIR50534', 'score': 550.77}, {'connected_gene': 'GC19M019509', 'score': 0.77}]
chr19	GH19I019517	19514852	19514968	0.43	[{'connected_gene': 'TSSK6', 'score': 550.77}, {'connected_gene': 'ENSG00000258674', 'score': 550.77}, {'connected_gene': 'NDUFA13', 'score': 550.77}, {'connected_gene': 'PIR50534', 'score': 550.77}, {'connected_gene': 'GC19M019509', 'score': 0.44}]
chr19	GH19I020000	20000154	20000283	0.22	[{'connected_gene': 'TSSK6', 'score': 18.23}, {'connected_gene': 'GC19M022318', 'score': 0.44}, {'connected_gene': 'VN1R77P', 'score': 0.34}, {'connected_gene': 'ZNF682', 'score': 0.28}, {'connected_gene': 'BNIP3P12', 'score': 0.22}]
chr19	GH19I019512	19512989	19513392	0.28	[{'connected_gene': 'TSSK6', 'score': 0.77}, {'connected_gene': 'GC19M019509', 'score': 0.77}]
chr19	GH19I018587	18587628	18591251	2.32	[{'connected_gene': 'REX1BD', 'score': 563.01}, {'connected_gene': 'ENSG00000268030', 'score': 85.21}, {'connected_gene': 'UPF1', 'score': 78.17}, {'connected_gene': 'ENSG00000268938', 'score': 65.19}, {'connected_gene': 'NR2C2AP', 'score': 64.28}, {'connected_gene': 'ENSG00000269191', 'score': 56.38}, {'connected_gene': 'MAU2', 'score': 53.44}, {'connected_gene': 'IQCN', 'score': 52.41}, {'connected_gene': 'MEF2B', 'score': 37.12}, {'connected_gene': 'ELL', 'score': 28.89}, {'connected_gene': 'KXD1', 'score': 24.04}, {'connected_gene': 'UBA52', 'score': 21.91}, {'connected_gene': 'RPL18A', 'score': 19.97}, {'connected_gene': 'SUGP2', 'score': 18.87}, {'connected_gene': 'TMEM161A', 'score': 11.94}, {'connected_gene': 'TSSK6', 'score': 11.43}, {'connected_gene': 'RFXANK', 'score': 10.0}, {'connected_gene': 'SUGP1', 'score': 9.9}, {'connected_gene': 'GATAD2A', 'score': 9.86}, {'connected_gene': 'CRLF1', 'score': 8.19}, {'connected_gene': 'TMEM59L', 'score': 0.37}]
chr19	GH19I019515	19515451	19517412	2.04	[{'connected_gene': 'NDUFA13', 'score': 586.7}, {'connected_gene': 'TSSK6', 'score': 550.77}, {'connected_gene': 'ENSG00000258674', 'score': 550.77}, {'connected_gene': 'PIR50534', 'score': 550.77}, {'connected_gene': 'GATAD2A', 'score': 8.01}, {'connected_gene': 'YJEFN3', 'score': 0.39}]
chr19	GH19I018657	18657160	18661749	1.54	[{'connected_gene': 'MAU2', 'score': 22.63}, {'connected_gene': 'IQCN', 'score': 22.61}, {'connected_gene': 'ENSG00000268030', 'score': 22.19}, {'connected_gene': 'UPF1', 'score': 21.58}, {'connected_gene': 'SUGP2', 'score': 18.88}, {'connected_gene': 'CRTC1', 'score': 15.71}, {'connected_gene': 'TSSK6', 'score': 11.43}, {'connected_gene': 'ENSG00000268938', 'score': 10.63}, {'connected_gene': 'UNC13A', 'score': 10.54}, {'connected_gene': 'TMEM59L', 'score': 10.46}, {'connected_gene': 'NR2C2AP', 'score': 10.46}, {'connected_gene': 'ENSG00000269191', 'score': 10.03}, {'connected_gene': 'SUGP1', 'score': 9.9}, {'connected_gene': 'IFI30', 'score': 5.55}, {'connected_gene': 'CRLF1', 'score': 4.81}, {'connected_gene': 'KLHL26', 'score': 0.34}]
chr19	GH19I019755	19755288	19755676	0.25	[{'connected_gene': 'PIR51651', 'score': 550.77}, {'connected_gene': 'PIR48972', 'score': 550.77}, {'connected_gene': 'GC19M022302', 'score': 550.77}, {'connected_gene': 'PIR51069', 'score': 550.77}, {'connected_gene': 'GC19M022204', 'score': 550.77}, {'connected_gene': 'TSSK6', 'score': 5.86}, {'connected_gene': 'PIR31947', 'score': 0.77}, {'connected_gene': 'GC19M022270', 'score': 0.77}, {'connected_gene': 'PIRC98', 'score': 0.29}]