PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000331768	[[99864082, 99865462], [99866435, 99866596], [99870561, 99870647], [99871541, 99871708], [99872852, 99872927], [99879287, 99879402], [99880212, 99880271], [99924615, 99924872], [99925449, 99925522], [99927528, 99927677], [99929822, 99929915], [99932039, 99932150], [99947064, 99947216]]	[[99865015, 99865462], [99866435, 99866596], [99870561, 99870647], [99871541, 99871708], [99872852, 99872927], [99879287, 99879402], [99880212, 99880271], [99924615, 99924872], [99925449, 99925522], [99927528, 99927677], [99929822, 99929915], [99932039, 99932142]]
ENST00000446066	[[99864805, 99865462], [99866435, 99866596], [99870561, 99870647], [99871541, 99871708], [99872852, 99872927], [99924615, 99924872], [99925449, 99925522], [99929822, 99929915], [99932039, 99932150], [99947064, 99947138]]	[[99925472, 99925522], [99929822, 99929915], [99932039, 99932142]]
ENST00000489770	[[99865068, 99865462], [99866435, 99866596], [99879287, 99879587]]	None
ENST00000453764	[[99871651, 99871708], [99872852, 99872927], [99879287, 99879402], [99880212, 99880271], [99924615, 99924872], [99925449, 99925522], [99929822, 99929915], [99932039, 99932150], [99947064, 99947197]]	[[99925472, 99925522], [99929822, 99929915], [99932039, 99932142]]
ENST00000329331	[[99876140, 99876552], [99879287, 99879402], [99880212, 99880271], [99924615, 99924872], [99925449, 99925522], [99927528, 99927677], [99929822, 99929915], [99932039, 99932150], [99947064, 99947125]]	[[99876510, 99876552], [99879287, 99879402], [99880212, 99880271], [99924615, 99924872], [99925449, 99925522], [99927528, 99927677], [99929822, 99929915], [99932039, 99932142]]
ENST00000436070	[[99877615, 99879402], [99880212, 99880271], [99924615, 99924872], [99925449, 99925522], [99927528, 99927677], [99929822, 99929915], [99932039, 99932150], [99947064, 99947127]]	[[99879257, 99879402], [99880212, 99880271], [99924615, 99924872], [99925449, 99925522], [99927528, 99927677], [99929822, 99929915], [99932039, 99932142]]
ENST00000357563	[[99877914, 99879402], [99880212, 99880271], [99924615, 99924872], [99925449, 99925522], [99929822, 99929915], [99932039, 99932150], [99947064, 99947174]]	[[99925472, 99925522], [99929822, 99929915], [99932039, 99932142]]
ENST00000453938	[[99924635, 99924872], [99925449, 99925522], [99929822, 99929915], [99932039, 99932150], [99945075, 99945106]]	None
NM_032233	[[99864082, 99865462], [99866435, 99866596], [99870561, 99870647], [99871541, 99871708], [99872852, 99872927], [99879287, 99879402], [99880212, 99880271], [99924615, 99924872], [99925449, 99925522], [99927528, 99927677], [99929822, 99929915], [99932039, 99932150], [99947064, 99947226]]	[[99865015, 99865462], [99866435, 99866596], [99870561, 99870647], [99871541, 99871708], [99872852, 99872927], [99879287, 99879402], [99880212, 99880271], [99924615, 99924872], [99925449, 99925522], [99927528, 99927677], [99929822, 99929915], [99932039, 99932142]]
NM_199123	[[99876140, 99876552], [99879287, 99879402], [99880212, 99880271], [99924615, 99924872], [99925449, 99925522], [99927528, 99927677], [99929822, 99929915], [99932039, 99932150], [99947064, 99947226]]	[[99876510, 99876552], [99879287, 99879402], [99880212, 99880271], [99924615, 99924872], [99925449, 99925522], [99927528, 99927677], [99929822, 99929915], [99932039, 99932142]]

Promoter

Chrom	Start	End	Description
chr14	99945118	99945134	CAGE_peak_7_at_SETD3_5end
chr14	99947100	99947105	CAGE_peak_4_at_SETD3_5end
chr14	99947121	99947136	CAGE_peak_2_at_SETD3_5end
chr14	99947142	99947156	CAGE_peak_3_at_SETD3_5end
chr14	99947158	99947161	CAGE_peak_5_at_SETD3_5end
chr14	99947168	99947232	CAGE_peak_1_at_SETD3_5end
chr14	99947613	99947617	CAGE_peak_8_at_SETD3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr14	GH14I099462	99462391	99462493	0.2	[{'connected_gene': 'CCNK', 'score': 0.37}, {'connected_gene': 'SETD3', 'score': 0.37}, {'connected_gene': 'RNU6-91P', 'score': 0.37}]
chr14	GH14I099467	99467524	99467673	0.43	[{'connected_gene': 'CCNK', 'score': 0.39}, {'connected_gene': 'SETD3', 'score': 0.39}, {'connected_gene': 'RNU6-91P', 'score': 0.34}]
chr14	GH14I099477	99475784	99475933	0.63	[{'connected_gene': 'CCNK', 'score': 0.44}, {'connected_gene': 'SETD3', 'score': 0.44}, {'connected_gene': 'RNU6-91P', 'score': 0.29}]
chr14	GH14I099459	99459838	99461613	0.66	[{'connected_gene': 'CCNK', 'score': 11.39}, {'connected_gene': 'SETD3', 'score': 11.39}, {'connected_gene': 'RNU6-91P', 'score': 0.37}]
chr14	GH14I099476	99476872	99477599	0.38	[{'connected_gene': 'CCNK', 'score': 0.77}, {'connected_gene': 'SETD3', 'score': 0.77}, {'connected_gene': 'RNU6-91P', 'score': 0.29}]
chr14	GH14I099479	99478002	99478798	0.46	[{'connected_gene': 'CCNK', 'score': 0.77}, {'connected_gene': 'SETD3', 'score': 0.77}, {'connected_gene': 'RNU6-91P', 'score': 0.29}]
chr14	GH14I099478	99478910	99482782	2.06	[{'connected_gene': 'CCNK', 'score': 575.05}, {'connected_gene': 'SETD3', 'score': 556.94}, {'connected_gene': 'RNU6-91P', 'score': 0.28}]
chr14	GH14I099427	99427784	99427953	0.2	[{'connected_gene': 'CCNK', 'score': 10.64}, {'connected_gene': 'SETD3', 'score': 10.64}, {'connected_gene': 'GC14P099446', 'score': 0.37}, {'connected_gene': 'ENSG00000258383', 'score': 0.15}]
chr14	GH14I099394	99394369	99395318	0.2	[{'connected_gene': 'CCNK', 'score': 5.51}, {'connected_gene': 'SETD3', 'score': 5.36}, {'connected_gene': 'GC14P099446', 'score': 0.25}, {'connected_gene': 'ENSG00000258383', 'score': 0.21}]
chr14	GH14I099415	99415600	99416001	0.88	[{'connected_gene': 'CCNK', 'score': 10.17}, {'connected_gene': 'SETD3', 'score': 10.17}, {'connected_gene': 'GC14P099446', 'score': 0.31}, {'connected_gene': 'ENSG00000258383', 'score': 0.18}]
chr14	GH14I099411	99411724	99413949	0.6	[{'connected_gene': 'CCNK', 'score': 14.82}, {'connected_gene': 'SETD3', 'score': 9.99}, {'connected_gene': 'GC14P099446', 'score': 0.29}, {'connected_gene': 'ENSG00000258383', 'score': 0.18}]
chr14	GH14I099430	99430584	99430713	0.54	[{'connected_gene': 'CCNK', 'score': 10.48}, {'connected_gene': 'SETD3', 'score': 10.48}, {'connected_gene': 'GC14P099446', 'score': 0.39}, {'connected_gene': 'ENSG00000258383', 'score': 0.15}]
chr14	GH14I099484	99484466	99484525	0.61	[{'connected_gene': 'CCNK', 'score': 550.77}, {'connected_gene': 'SETD3', 'score': 0.77}, {'connected_gene': 'GC14M099501', 'score': 0.37}]
chr14	GH14I099225	99225561	99237000	1.92	[{'connected_gene': 'CCNK', 'score': 24.24}, {'connected_gene': 'BCL11B', 'score': 12.6}, {'connected_gene': 'ENSG00000234648', 'score': 12.2}, {'connected_gene': 'RPL3P4', 'score': 10.96}, {'connected_gene': 'SETD3', 'score': 4.44}, {'connected_gene': 'GC14M099236', 'score': 0.44}, {'connected_gene': 'GC14M099237', 'score': 0.44}, {'connected_gene': 'GC14P099215', 'score': 0.37}]
chr14	GH14I099468	99468487	99470200	0.63	[{'connected_gene': 'SETD3', 'score': 6.43}, {'connected_gene': 'CCNK', 'score': 5.36}, {'connected_gene': 'RNU6-91P', 'score': 0.31}]
chr14	GH14I099475	99475083	99475749	1.39	[{'connected_gene': 'SETD3', 'score': 550.44}, {'connected_gene': 'CCNK', 'score': 0.44}, {'connected_gene': 'RNU6-91P', 'score': 0.29}]
chr14	GH14I099401	99401171	99401909	0.31	[{'connected_gene': 'SETD3', 'score': 15.49}, {'connected_gene': 'CCNK', 'score': 10.08}, {'connected_gene': 'GC14P099446', 'score': 0.26}, {'connected_gene': 'ENSG00000258383', 'score': 0.2}]
chr14	GH14I099435	99435818	99438147	0.66	[{'connected_gene': 'SETD3', 'score': 16.45}, {'connected_gene': 'CCNK', 'score': 15.64}, {'connected_gene': 'GC14P099446', 'score': 0.44}, {'connected_gene': 'ENSG00000258383', 'score': 0.15}]
chr14	GH14I099217	99217301	99219395	1.08	[{'connected_gene': 'SETD3', 'score': 4.87}, {'connected_gene': 'GC14P099215', 'score': 0.77}, {'connected_gene': 'GC14M099236', 'score': 0.37}, {'connected_gene': 'GC14M099237', 'score': 0.37}, {'connected_gene': 'BCL11B', 'score': 0.23}]
chr14	GH14I099206	99206788	99214669	0.57	[{'connected_gene': 'SETD3', 'score': 4.94}, {'connected_gene': 'DEGS2', 'score': 4.42}, {'connected_gene': 'GC14P099215', 'score': 0.77}, {'connected_gene': 'GC14M099192', 'score': 0.37}, {'connected_gene': 'GC14M099194', 'score': 0.37}, {'connected_gene': 'BCL11B', 'score': 0.21}]
chr14	GH14I099422	99422357	99423482	0.52	[{'connected_gene': 'SETD3', 'score': 6.17}, {'connected_gene': 'GC14P099446', 'score': 0.34}, {'connected_gene': 'ENSG00000258383', 'score': 0.16}]
chr14	GH14I099560	99560023	99577989	2.14	[{'connected_gene': 'CCDC85C', 'score': 23.67}, {'connected_gene': 'CCNK', 'score': 14.59}, {'connected_gene': 'ENSG00000234648', 'score': 12.81}, {'connected_gene': 'ENSG00000247970', 'score': 12.0}, {'connected_gene': 'HHIPL1', 'score': 11.22}, {'connected_gene': 'RPL3P4', 'score': 11.18}, {'connected_gene': 'EML1', 'score': 10.12}, {'connected_gene': 'SETD3', 'score': 1.64}, {'connected_gene': 'GC14P099584', 'score': 0.39}, {'connected_gene': 'GC14M099518', 'score': 0.29}]
chr14	GH14I099469	99468153	99468171	0.26	[{'connected_gene': 'EML1', 'score': 1.44}, {'connected_gene': 'CCNK', 'score': 0.39}, {'connected_gene': 'SETD3', 'score': 0.39}, {'connected_gene': 'RNU6-91P', 'score': 0.34}]
chr14	GH14I099502	99502357	99504315	0.58	[{'connected_gene': 'GC14M099501', 'score': 550.77}, {'connected_gene': 'CCNK', 'score': 11.29}, {'connected_gene': 'SETD3', 'score': 11.29}, {'connected_gene': 'ENSG00000247970', 'score': 10.61}, {'connected_gene': 'CCDC85C', 'score': 10.61}, {'connected_gene': 'ENSG00000258749', 'score': 0.44}]
chr14	GH14I099516	99516394	99517309	0.46	[{'connected_gene': 'PIR34457', 'score': 550.77}, {'connected_gene': 'SETD3', 'score': 5.57}, {'connected_gene': 'LOC105370661', 'score': 0.37}, {'connected_gene': 'CCNK', 'score': 0.28}, {'connected_gene': 'CCDC85C', 'score': 0.17}]
chr14	GH14I099417	99417260	99417500	0.66	[{'connected_gene': 'GC14P099446', 'score': 0.31}, {'connected_gene': 'SETD3', 'score': 0.21}, {'connected_gene': 'ENSG00000258383', 'score': 0.17}]
chr14	GH14I099424	99424198	99425760	0.31	[{'connected_gene': 'GC14P099446', 'score': 0.37}, {'connected_gene': 'SETD3', 'score': 0.22}, {'connected_gene': 'ENSG00000258383', 'score': 0.16}]
chr14	GH14I099420	99420784	99421453	0.49	[{'connected_gene': 'GC14P099446', 'score': 0.34}, {'connected_gene': 'SETD3', 'score': 0.21}, {'connected_gene': 'ENSG00000258383', 'score': 0.17}]