PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000507402	[[80597408, 80597489], [80604379, 80604530], [80604764, 80604857], [80607029, 80607098], [80608362, 80608736]]	None
ENST00000254037	[[80597421, 80600960], [80604379, 80604530], [80604764, 80604857], [80607029, 80607098], [80608362, 80609116]]	[[80600576, 80600960], [80604379, 80604530], [80604764, 80604857], [80607029, 80607098], [80608362, 80608481]]
ENST00000407610	[[80597430, 80597517], [80600559, 80600960], [80604379, 80604530], [80604764, 80604857], [80607029, 80607098], [80608362, 80609116]]	[[80600576, 80600960], [80604379, 80604530], [80604764, 80604857], [80607029, 80607098], [80608362, 80608481]]
ENST00000506458	[[80597441, 80597517], [80604379, 80604530], [80604764, 80604857], [80607029, 80607098], [80608362, 80608791]]	None
ENST00000380199	[[80597442, 80597489], [80600559, 80600960], [80604379, 80604530], [80604764, 80604857], [80607029, 80607098], [80608362, 80608973]]	[[80600576, 80600960], [80604379, 80604530], [80604764, 80604857], [80607029, 80607098], [80608362, 80608481]]
ENST00000438268	[[80597459, 80597874], [80600559, 80600960], [80604379, 80604530], [80604764, 80604857], [80607029, 80607098], [80608362, 80608481]]	[[80600576, 80600960], [80604379, 80604530], [80604764, 80604857], [80607029, 80607098], [80608362, 80608481]]
ENST00000504502	[[80597480, 80597517], [80604379, 80604530], [80604764, 80604977]]	None
ENST00000505860	[[80604225, 80604530], [80604764, 80604857], [80607029, 80607098], [80608362, 80608433]]	None
ENST00000510227	[[80604486, 80604857], [80607029, 80607098], [80608362, 80608792]]	None
NM_001131036	[[80597401, 80597489], [80600559, 80600960], [80604379, 80604530], [80604764, 80604857], [80607029, 80607098], [80608362, 80608966]]	[[80600576, 80600960], [80604379, 80604530], [80604764, 80604857], [80607029, 80607098], [80608362, 80608481]]
NM_001131035	[[80597401, 80597517], [80600559, 80600960], [80604379, 80604530], [80604764, 80604857], [80607029, 80607098], [80608362, 80608966]]	[[80600576, 80600960], [80604379, 80604530], [80604764, 80604857], [80607029, 80607098], [80608362, 80608481]]
NM_032280	[[80597401, 80597874], [80600559, 80600960], [80604379, 80604530], [80604764, 80604857], [80607029, 80607098], [80608362, 80608966]]	[[80600576, 80600960], [80604379, 80604530], [80604764, 80604857], [80607029, 80607098], [80608362, 80608481]]

Promoter

Chrom	Start	End	Description
chr5	80597398	80597418	CAGE_peak_2_at_ZCCHC9_5end
chr5	80597419	80597448	CAGE_peak_1_at_ZCCHC9_5end
chr5	80597453	80597475	CAGE_peak_3_at_ZCCHC9_5end
chr5	80597480	80597485	CAGE_peak_4_at_ZCCHC9_5end
chr5	80597812	80597820	CAGE_peak_5_at_ZCCHC9_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr5	GH05I082274	82274157	82275562	0.74	[{'connected_gene': 'ATP6AP1L', 'score': 77.22}, {'connected_gene': 'ZCCHC9', 'score': 24.81}, {'connected_gene': 'CKMT2-AS1', 'score': 18.99}, {'connected_gene': 'GC05M082258', 'score': 0.77}, {'connected_gene': 'GC05P082278', 'score': 0.77}, {'connected_gene': 'RPS23', 'score': 0.77}, {'connected_gene': 'ENSG00000251374', 'score': 0.44}, {'connected_gene': 'ATG10', 'score': 0.06}]
chr5	GH05I082276	82276179	82279774	2.02	[{'connected_gene': 'ATP6AP1L', 'score': 627.64}, {'connected_gene': 'RPS23', 'score': 560.73}, {'connected_gene': 'GC05M082258', 'score': 550.77}, {'connected_gene': 'GC05P082278', 'score': 550.77}, {'connected_gene': 'ZCCHC9', 'score': 36.71}, {'connected_gene': 'ATG10', 'score': 22.77}, {'connected_gene': 'CKMT2-AS1', 'score': 10.43}, {'connected_gene': 'ENSG00000251374', 'score': 0.39}]
chr5	GH05I081653	81653945	81654961	0.2	[{'connected_gene': 'ZCCHC9', 'score': 4.56}, {'connected_gene': 'SSBP2', 'score': 0.15}, {'connected_gene': 'GC05M081517', 'score': 0.12}]
chr5	GH05I081683	81683375	81684784	0.2	[{'connected_gene': 'ZCCHC9', 'score': 4.56}, {'connected_gene': 'SSBP2', 'score': 0.2}, {'connected_gene': 'GC05M081517', 'score': 0.1}]
chr5	GH05I081786	81786053	81789399	0.92	[{'connected_gene': 'ZCCHC9', 'score': 11.77}, {'connected_gene': 'ATG10-AS1', 'score': 9.48}, {'connected_gene': 'SSBP2', 'score': 0.28}, {'connected_gene': 'ENSG00000249483', 'score': 0.21}]
chr5	GH05I081352	81352887	81355101	0.88	[{'connected_gene': 'ZCCHC9', 'score': 16.66}, {'connected_gene': 'CKMT2-AS1', 'score': 16.06}, {'connected_gene': 'ACOT12', 'score': 11.78}, {'connected_gene': 'CKMT2', 'score': 10.08}, {'connected_gene': 'GC05M081320', 'score': 0.31}]
chr5	GH05I081299	81299266	81300191	0.72	[{'connected_gene': 'ZCCHC9', 'score': 550.77}, {'connected_gene': 'CKMT2-AS1', 'score': 550.77}, {'connected_gene': 'ENSG00000248794', 'score': 0.22}]
chr5	GH05I081748	81748306	81752772	2.3	[{'connected_gene': 'SSBP2', 'score': 550.77}, {'connected_gene': 'ZCCHC9', 'score': 28.47}, {'connected_gene': 'CKMT2-AS1', 'score': 11.71}, {'connected_gene': 'RPS23', 'score': 11.63}, {'connected_gene': 'ATG10', 'score': 10.14}, {'connected_gene': 'GC05M081517', 'score': 0.07}]
chr5	GH05I080654	80652842	80656635	2.02	[{'connected_gene': 'DHFR', 'score': 618.66}, {'connected_gene': 'MSH3', 'score': 580.73}, {'connected_gene': 'GC05P080655', 'score': 550.77}, {'connected_gene': 'CKMT2-AS1', 'score': 12.75}, {'connected_gene': 'ZCCHC9', 'score': 10.63}]
chr5	GH05I080487	80487108	80490800	2.01	[{'connected_gene': 'LOC105379049', 'score': 550.77}, {'connected_gene': 'FAM151B', 'score': 550.77}, {'connected_gene': 'ZCCHC9', 'score': 25.34}, {'connected_gene': 'PAPD4', 'score': 15.85}, {'connected_gene': 'CKMT2-AS1', 'score': 15.85}, {'connected_gene': 'MTX3', 'score': 10.47}, {'connected_gene': 'ZFYVE16', 'score': 6.07}, {'connected_gene': 'DHFR', 'score': 5.33}, {'connected_gene': 'RPS27AP9', 'score': 0.39}]
chr5	GH05I081267	81267974	81270462	0.95	[{'connected_gene': 'CKMT2-AS1', 'score': 33.45}, {'connected_gene': 'ZCCHC9', 'score': 11.34}, {'connected_gene': 'CKMT2', 'score': 10.93}, {'connected_gene': 'ENSG00000248794', 'score': 8.82}]
chr5	GH05I081300	81300325	81305031	2.08	[{'connected_gene': 'CKMT2-AS1', 'score': 596.33}, {'connected_gene': 'ZCCHC9', 'score': 573.63}, {'connected_gene': 'ENSG00000248794', 'score': 12.05}, {'connected_gene': 'GC05M081320', 'score': 0.34}]
chr5	GH05I081849	81849603	81854406	2.07	[{'connected_gene': 'ENSG00000249483', 'score': 550.77}, {'connected_gene': 'ZCCHC9', 'score': 11.75}, {'connected_gene': 'ATP6AP1L', 'score': 8.6}, {'connected_gene': 'SSBP2', 'score': 5.53}, {'connected_gene': 'PPIAP11', 'score': 4.64}, {'connected_gene': 'SEM1P1', 'score': 0.26}]
chr5	GH05I081314	81314823	81316507	0.38	[{'connected_gene': 'ENSG00000248794', 'score': 11.9}, {'connected_gene': 'GC05M081320', 'score': 0.44}, {'connected_gene': 'ZCCHC9', 'score': 0.39}]