PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000376344	[[86553225, 86554658], [86559708, 86559904], [86570295, 86570555], [86571078, 86571632]]	[[86554425, 86554658], [86559708, 86559904], [86570295, 86570555], [86571078, 86571415]]
ENST00000314700	[[86553228, 86554658], [86559708, 86559904], [86570295, 86570555], [86571078, 86571169], [86571811, 86571901]]	[[86554425, 86554658], [86559708, 86559904], [86570295, 86570469]]
ENST00000376340	[[86568562, 86568758], [86570295, 86570555], [86571078, 86571242]]	[[86568749, 86568758], [86570295, 86570469]]
NM_032307	[[86553225, 86554658], [86559708, 86559904], [86570295, 86570555], [86571078, 86571657]]	[[86554425, 86554658], [86559708, 86559904], [86570295, 86570555], [86571078, 86571415]]
NM_001317997	[[86553225, 86554658], [86559708, 86559904], [86570295, 86570555], [86571078, 86571169], [86571811, 86571901]]	[[86554425, 86554658], [86559708, 86559904], [86570295, 86570469]]

Promoter

Chrom	Start	End	Description
chr9	86571432	86571453	CAGE_peak_5_at_C9orf64_5end
chr9	86571472	86571485	CAGE_peak_4_at_C9orf64_5end
chr9	86571540	86571545	CAGE_peak_9_at_C9orf64_5end
chr9	86571596	86571607	CAGE_peak_3_at_C9orf64_5end
chr9	86571628	86571639	CAGE_peak_2_at_C9orf64_5end
chr9	86571641	86571680	CAGE_peak_1_at_C9orf64_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr9	GH09I083983	83983001	83983400	0.63	[{'connected_gene': 'C9orf64', 'score': 11.41}, {'connected_gene': 'KIF27', 'score': 10.41}, {'connected_gene': 'LOC105376116', 'score': 9.84}, {'connected_gene': 'RMI1', 'score': 6.63}, {'connected_gene': 'GC09P083995', 'score': 0.44}]
chr9	GH09I084821	84821228	84823032	0.46	[{'connected_gene': 'C9orf64', 'score': 9.9}, {'connected_gene': 'GC09P084671', 'score': 0.1}, {'connected_gene': 'NTRK2', 'score': 0.1}, {'connected_gene': 'GC09P085030', 'score': 0.08}]
chr9	GH09I083959	83959126	83959335	0.57	[{'connected_gene': 'C9orf64', 'score': 0.77}, {'connected_gene': 'MIR7-1', 'score': 0.39}]
chr9	GH09I083955	83955322	83957605	1.99	[{'connected_gene': 'C9orf64', 'score': 550.77}, {'connected_gene': 'HNRNPK', 'score': 16.35}, {'connected_gene': 'LOC105376114', 'score': 7.48}, {'connected_gene': 'RMI1', 'score': 6.75}, {'connected_gene': 'KIF27', 'score': 0.29}]
chr9	GH09I083933	83933341	83936204	0.94	[{'connected_gene': 'C9orf64', 'score': 12.97}, {'connected_gene': 'LOC105376116', 'score': 10.63}, {'connected_gene': 'RMI1', 'score': 7.12}, {'connected_gene': 'ENSG00000231616', 'score': 4.85}, {'connected_gene': 'KIF27', 'score': 0.39}]
chr9	GH09I083961	83961853	83963112	0.82	[{'connected_gene': 'KIF27', 'score': 10.94}, {'connected_gene': 'LOC105376116', 'score': 10.47}, {'connected_gene': 'RMI1', 'score': 6.04}, {'connected_gene': 'MIR7-1', 'score': 0.44}, {'connected_gene': 'C9orf64', 'score': 0.44}]
chr9	GH09I083965	83965001	83966175	0.97	[{'connected_gene': 'KIF27', 'score': 10.94}, {'connected_gene': 'LOC105376116', 'score': 10.47}, {'connected_gene': 'IDNK', 'score': 8.38}, {'connected_gene': 'ENSG00000231616', 'score': 4.82}, {'connected_gene': 'MIR7-1', 'score': 0.77}, {'connected_gene': 'C9orf64', 'score': 0.44}]
chr9	GH09I083977	83977305	83982808	2.29	[{'connected_gene': 'HNRNPK', 'score': 579.02}, {'connected_gene': 'RMI1', 'score': 557.48}, {'connected_gene': 'KIF27', 'score': 37.05}, {'connected_gene': 'C9orf64', 'score': 11.98}, {'connected_gene': 'LOC105376116', 'score': 9.84}, {'connected_gene': 'IDNK', 'score': 8.27}, {'connected_gene': 'GKAP1', 'score': 5.26}, {'connected_gene': 'ENSG00000235298', 'score': 0.44}]
chr9	GH09I083271	83271096	83272303	0.57	[{'connected_gene': 'FRMD3', 'score': 5.28}, {'connected_gene': 'C9orf64', 'score': 5.21}, {'connected_gene': 'GC09P083268', 'score': 0.77}, {'connected_gene': 'RNU4-29P', 'score': 0.77}]
chr9	GH09I083922	83922566	83922715	0.43	[{'connected_gene': 'LOC105376335', 'score': 550.77}, {'connected_gene': 'KIF27', 'score': 550.77}, {'connected_gene': 'C9orf64', 'score': 0.29}]
chr9	GH09I083937	83937966	83938135	0.63	[{'connected_gene': 'LOC105376116', 'score': 10.61}, {'connected_gene': 'C9orf64', 'score': 0.37}, {'connected_gene': 'KIF27', 'score': 0.37}]
chr9	GH09I083940	83940562	83941608	0.38	[{'connected_gene': 'LOC105376116', 'score': 10.61}, {'connected_gene': 'C9orf64', 'score': 0.37}, {'connected_gene': 'KIF27', 'score': 0.37}]