PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000258083	[[73455133, 73455702], [73455922, 73456090], [73456588, 73456698], [73457240, 73457341], [73460221, 73460356]]	[[73455581, 73455702], [73455922, 73456090], [73456588, 73456698], [73457240, 73457341], [73460221, 73460288]]
ENST00000480093	[[73455458, 73455702], [73456588, 73456698], [73457240, 73457341], [73460221, 73460366]]	None
ENST00000470391	[[73456926, 73457341], [73460221, 73460357]]	None
NM_032319	[[73455133, 73455702], [73455922, 73456090], [73456588, 73456698], [73457240, 73457341], [73460221, 73460412]]	[[73455581, 73455702], [73455922, 73456090], [73456588, 73456698], [73457240, 73457341], [73460221, 73460288]]
NR_144358	[[73455133, 73455702], [73455922, 73456068], [73456588, 73456698], [73457240, 73457341], [73460221, 73460412]]	None

Promoter

Chrom	Start	End	Description
chr2	73460334	73460405	CAGE_peak_1_at_PRADC1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr2	GH02I073202	73202032	73203713	0.54	[{'connected_gene': 'NOTO', 'score': 550.77}, {'connected_gene': 'PRADC1', 'score': 11.85}, {'connected_gene': 'SMYD5', 'score': 6.73}, {'connected_gene': 'GC02P073186', 'score': 0.37}]
chr2	GH02I073156	73156332	73157229	1.02	[{'connected_gene': 'RAB11FIP5', 'score': 550.77}, {'connected_gene': 'DUSP11', 'score': 12.29}, {'connected_gene': 'ENSG00000273245', 'score': 11.7}, {'connected_gene': 'PRADC1', 'score': 9.58}, {'connected_gene': 'SFXN5', 'score': 4.44}, {'connected_gene': 'GC02P073186', 'score': 0.31}]
chr2	GH02I073232	73232406	73236260	2.12	[{'connected_gene': 'CCT7', 'score': 579.47}, {'connected_gene': 'PRADC1', 'score': 561.49}, {'connected_gene': 'DUSP11', 'score': 64.74}, {'connected_gene': 'ENSG00000273245', 'score': 63.52}, {'connected_gene': 'MOB1A', 'score': 30.39}, {'connected_gene': 'FBXO41', 'score': 12.52}, {'connected_gene': 'TPRKB', 'score': 12.37}, {'connected_gene': 'ALMS1', 'score': 11.03}, {'connected_gene': 'DGUOK-AS1', 'score': 10.15}, {'connected_gene': 'PIR47890', 'score': 0.44}]
chr2	GH02I073212	73212513	73213203	0.82	[{'connected_gene': 'SMYD5', 'score': 550.77}, {'connected_gene': 'PRADC1', 'score': 20.15}, {'connected_gene': 'CCT7', 'score': 17.49}, {'connected_gene': 'RAB11FIP5', 'score': 10.7}, {'connected_gene': 'SFXN5', 'score': 10.16}, {'connected_gene': 'SPR', 'score': 10.0}, {'connected_gene': 'NOTO', 'score': 0.39}]
chr2	GH02I073213	73213336	73215768	2.06	[{'connected_gene': 'SMYD5', 'score': 560.54}, {'connected_gene': 'PRADC1', 'score': 12.55}, {'connected_gene': 'CCT7', 'score': 5.3}]
chr2	GH02I073218	73218393	73218542	0.2	[{'connected_gene': 'SMYD5', 'score': 0.77}, {'connected_gene': 'PRADC1', 'score': 0.39}]
chr2	GH02I073175	73175043	73178265	1.56	[{'connected_gene': 'SMYD5', 'score': 21.01}, {'connected_gene': 'ALMS1', 'score': 14.1}, {'connected_gene': 'DUSP11', 'score': 13.27}, {'connected_gene': 'SFXN5', 'score': 12.86}, {'connected_gene': 'PRADC1', 'score': 11.86}, {'connected_gene': 'NOTO', 'score': 11.63}, {'connected_gene': 'SPR', 'score': 11.18}, {'connected_gene': 'ENSG00000273245', 'score': 11.14}, {'connected_gene': 'EMX1', 'score': 10.46}, {'connected_gene': 'CCT7', 'score': 5.09}, {'connected_gene': 'EGR4', 'score': 1.45}, {'connected_gene': 'GC02P073186', 'score': 0.44}, {'connected_gene': 'RAB11FIP5', 'score': 0.37}]
chr2	GH02I073191	73191133	73192599	0.79	[{'connected_gene': 'SMYD5', 'score': 21.9}, {'connected_gene': 'RAB11FIP5', 'score': 11.24}, {'connected_gene': 'PRADC1', 'score': 11.02}, {'connected_gene': 'SFXN5', 'score': 10.97}, {'connected_gene': 'SPR', 'score': 9.87}, {'connected_gene': 'EMX1', 'score': 9.82}, {'connected_gene': 'CCT7', 'score': 4.99}, {'connected_gene': 'GC02P073186', 'score': 0.44}, {'connected_gene': 'NOTO', 'score': 0.39}]
chr2	GH02I073244	73244144	73244728	0.65	[{'connected_gene': 'SMYD5', 'score': 12.04}, {'connected_gene': 'FBXO41', 'score': 11.57}, {'connected_gene': 'PRADC1', 'score': 8.0}, {'connected_gene': 'PIR47890', 'score': 0.77}, {'connected_gene': 'CCT7', 'score': 0.39}]