PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000494689	[[233086350, 233086490], [233092092, 233092189], [233105654, 233105864], [233113908, 233114228]]	None
ENST00000490807	[[233086359, 233086490], [233091302, 233091465], [233092092, 233092189], [233113908, 233114497]]	None
ENST00000366628	[[233086369, 233086490], [233091302, 233091465], [233092092, 233092189], [233105654, 233105864], [233113908, 233119628]]	[[233086456, 233086490], [233091302, 233091465], [233092092, 233092189], [233105654, 233105864], [233113908, 233113977]]
ENST00000496662	[[233086378, 233086490], [233105654, 233105864], [233113908, 233114468]]	None
ENST00000366627	[[233086385, 233086490], [233091302, 233091465], [233092092, 233092189], [233105654, 233105864], [233112087, 233113274]]	[[233086456, 233086490], [233091302, 233091465], [233092092, 233092189], [233105654, 233105864], [233112087, 233112270]]
ENST00000479125	[[233086587, 233086878], [233091302, 233091465], [233092092, 233092189], [233105654, 233105864]]	None
ENST00000487953	[[233091403, 233091465], [233092092, 233092189], [233105654, 233105864], [233112047, 233112205]]	None
ENST00000490098	[[233097648, 233105864], [233113908, 233114397]]	None
NR_138025	[[233086276, 233086490], [233105654, 233105864], [233113908, 233114548]]	None
NR_138028	[[233086276, 233086490], [233092092, 233092189], [233113908, 233114548]]	None
NR_138026	[[233086276, 233086490], [233092092, 233092189], [233105654, 233105864], [233113908, 233114548]]	None
NR_138024	[[233086276, 233086490], [233092092, 233092193], [233105654, 233105864], [233113908, 233114548]]	None
NM_001329453	[[233086276, 233086490], [233091302, 233091465], [233092092, 233092189], [233113908, 233114548]]	[[233086456, 233086490], [233091302, 233091465], [233092092, 233092189], [233113908, 233113977]]
NM_032324	[[233086276, 233086490], [233091302, 233091465], [233092092, 233092189], [233105654, 233105864], [233113908, 233114548]]	[[233086456, 233086490], [233091302, 233091465], [233092092, 233092189], [233105654, 233105864], [233113908, 233113977]]
NM_001329452	[[233086276, 233086490], [233091302, 233091465], [233092092, 233092193], [233113908, 233114548]]	[[233086456, 233086490], [233091302, 233091465], [233092092, 233092193], [233113908, 233114174]]
NR_138027	[[233086587, 233086878], [233091302, 233091465], [233092092, 233092189], [233105654, 233105864], [233113908, 233114548]]	None

Promoter

Chrom	Start	End	Description
chr1	233086304	233086325	CAGE_peak_2_at_NTPCR_5end
chr1	233086326	233086415	CAGE_peak_1_at_NTPCR_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I232989	232989382	232992539	0.49	[{'connected_gene': 'NTPCR', 'score': 25.82}, {'connected_gene': 'GC01M232977', 'score': 0.44}, {'connected_gene': 'GC01P233014', 'score': 0.34}, {'connected_gene': 'PCNX2', 'score': 0.06}]
chr1	GH01I233081	233081364	233082526	0.4	[{'connected_gene': 'NTPCR', 'score': 6.56}, {'connected_gene': 'PIR48572', 'score': 0.77}, {'connected_gene': 'GC01P233014', 'score': 0.2}, {'connected_gene': 'PCNX2', 'score': 0.08}]
chr1	GH01I232988	232988144	232989090	0.56	[{'connected_gene': 'NTPCR', 'score': 26.05}, {'connected_gene': 'GC01M232977', 'score': 0.44}, {'connected_gene': 'GC01P233014', 'score': 0.31}, {'connected_gene': 'PCNX2', 'score': 0.06}]
chr1	GH01I233097	233097464	233099137	0.66	[{'connected_gene': 'NTPCR', 'score': 4.8}, {'connected_gene': 'PIR48572', 'score': 0.39}, {'connected_gene': 'GC01P233278', 'score': 0.1}, {'connected_gene': 'PCNX2', 'score': 0.08}]
chr1	GH01I232511	232511315	232511464	0.89	[{'connected_gene': 'NTPCR', 'score': 9.96}, {'connected_gene': 'PIR51388', 'score': 0.15}, {'connected_gene': 'GC01P232625', 'score': 0.14}, {'connected_gene': 'SIPA1L2', 'score': 0.13}]
chr1	GH01I232578	232578002	232580599	1.03	[{'connected_gene': 'NTPCR', 'score': 5.01}, {'connected_gene': 'GC01P232625', 'score': 0.25}, {'connected_gene': 'SIPA1L2', 'score': 0.23}, {'connected_gene': 'PIR51388', 'score': 0.1}]
chr1	GH01I232915	232915484	232916628	0.2	[{'connected_gene': 'NTPCR', 'score': 17.6}, {'connected_gene': 'MAP10', 'score': 10.46}, {'connected_gene': 'RNU6-1211P', 'score': 9.4}, {'connected_gene': 'LOC105373201', 'score': 0.44}]
chr1	GH01I232952	232952393	232953704	0.86	[{'connected_gene': 'NTPCR', 'score': 41.92}, {'connected_gene': 'MAP10', 'score': 9.83}, {'connected_gene': 'GC01M232948', 'score': 0.77}, {'connected_gene': 'GC01M232977', 'score': 0.31}]
chr1	GH01I232962	232962525	232963808	0.78	[{'connected_gene': 'NTPCR', 'score': 42.55}, {'connected_gene': 'MAP10', 'score': 10.09}, {'connected_gene': 'GC01M232948', 'score': 0.39}, {'connected_gene': 'GC01M232977', 'score': 0.37}]
chr1	GH01I232966	232966174	232967331	0.31	[{'connected_gene': 'NTPCR', 'score': 13.48}, {'connected_gene': 'MAP10', 'score': 10.07}, {'connected_gene': 'GC01M232977', 'score': 0.39}, {'connected_gene': 'GC01M232948', 'score': 0.37}]
chr1	GH01I232949	232949693	232951776	2.2	[{'connected_gene': 'NTPCR', 'score': 598.48}, {'connected_gene': 'GC01M232948', 'score': 550.77}, {'connected_gene': 'RPS7P3', 'score': 11.24}, {'connected_gene': 'MAP10', 'score': 9.83}, {'connected_gene': 'GC01M232977', 'score': 0.29}]
chr1	GH01I232853	232853835	232855149	0.85	[{'connected_gene': 'NTPCR', 'score': 24.16}, {'connected_gene': 'RNU1-74P', 'score': 11.66}, {'connected_gene': 'MAP10', 'score': 10.92}, {'connected_gene': 'RNU6-1211P', 'score': 10.06}, {'connected_gene': 'GC01M232833', 'score': 0.34}, {'connected_gene': 'LOC101927711', 'score': 0.28}, {'connected_gene': 'PIR56010', 'score': 0.25}]
chr1	GH01I232890	232890386	232891801	0.51	[{'connected_gene': 'NTPCR', 'score': 15.7}, {'connected_gene': 'RNU1-74P', 'score': 10.69}, {'connected_gene': 'MAP10', 'score': 10.41}, {'connected_gene': 'PIR56010', 'score': 0.39}, {'connected_gene': 'GC01M232833', 'score': 0.22}, {'connected_gene': 'LOC101927711', 'score': 0.18}]
chr1	GH01I232894	232894425	232895140	0.31	[{'connected_gene': 'NTPCR', 'score': 11.31}, {'connected_gene': 'RNU1-74P', 'score': 10.67}, {'connected_gene': 'PIR56010', 'score': 0.44}, {'connected_gene': 'GC01M232833', 'score': 0.21}, {'connected_gene': 'LOC101927711', 'score': 0.18}]
chr1	GH01I232896	232896798	232897516	0.31	[{'connected_gene': 'NTPCR', 'score': 15.99}, {'connected_gene': 'RNU1-74P', 'score': 10.67}, {'connected_gene': 'PIR56010', 'score': 0.44}, {'connected_gene': 'GC01M232833', 'score': 0.21}, {'connected_gene': 'LOC101927711', 'score': 0.18}]
chr1	GH01I232895	232895863	232896671	0.2	[{'connected_gene': 'NTPCR', 'score': 11.32}, {'connected_gene': 'RNU1-74P', 'score': 10.67}, {'connected_gene': 'PIR56010', 'score': 0.44}, {'connected_gene': 'GC01M232833', 'score': 0.21}, {'connected_gene': 'LOC101927711', 'score': 0.18}]
chr1	GH01I232899	232899283	232900446	0.43	[{'connected_gene': 'NTPCR', 'score': 7.01}, {'connected_gene': 'PIR56010', 'score': 0.77}, {'connected_gene': 'RNU1-74P', 'score': 0.2}, {'connected_gene': 'GC01M232833', 'score': 0.2}, {'connected_gene': 'LOC101927711', 'score': 0.18}]
chr1	GH01I233019	233019430	233020856	0.51	[{'connected_gene': 'NTPCR', 'score': 20.87}, {'connected_gene': 'RNU6-1211P', 'score': 9.44}, {'connected_gene': 'GC01P233014', 'score': 0.44}, {'connected_gene': 'PIR48572', 'score': 0.2}, {'connected_gene': 'PCNX2', 'score': 0.06}]
chr1	GH01I233006	233006430	233006619	0.2	[{'connected_gene': 'NTPCR', 'score': 15.55}, {'connected_gene': 'RNU6-1211P', 'score': 9.7}, {'connected_gene': 'GC01P233014', 'score': 0.44}, {'connected_gene': 'GC01M232977', 'score': 0.31}, {'connected_gene': 'PCNX2', 'score': 0.06}]
chr1	GH01I232968	232968144	232970196	0.46	[{'connected_gene': 'NTPCR', 'score': 42.34}, {'connected_gene': 'RNU6-1211P', 'score': 10.27}, {'connected_gene': 'MAP10', 'score': 10.07}, {'connected_gene': 'GC01M232977', 'score': 0.39}, {'connected_gene': 'GC01M232948', 'score': 0.37}]
chr1	GH01I232937	232937734	232938400	0.97	[{'connected_gene': 'NTPCR', 'score': 45.83}, {'connected_gene': 'RNU6-1211P', 'score': 9.35}, {'connected_gene': 'LOC105373201', 'score': 0.31}]
chr1	GH01I232939	232939555	232940234	0.46	[{'connected_gene': 'NTPCR', 'score': 46.32}, {'connected_gene': 'RNU6-1211P', 'score': 9.35}, {'connected_gene': 'LOC105373201', 'score': 0.31}]
chr1	GH01I232977	232977762	232979079	0.74	[{'connected_gene': 'NTPCR', 'score': 47.06}, {'connected_gene': 'RNU6-1211P', 'score': 9.97}, {'connected_gene': 'GC01M232977', 'score': 0.77}, {'connected_gene': 'GC01M232948', 'score': 0.31}]
chr1	GH01I232903	232903347	232907372	0.72	[{'connected_gene': 'NTPCR', 'score': 5.69}, {'connected_gene': 'PIR56010', 'score': 0.77}, {'connected_gene': 'LOC105373201', 'score': 0.44}, {'connected_gene': 'LOC101927711', 'score': 0.17}]
chr1	GH01I232934	232934918	232935795	0.68	[{'connected_gene': 'NTPCR', 'score': 44.47}, {'connected_gene': 'LOC105373201', 'score': 0.34}]
chr1	GH01I232924	232924959	232926557	0.4	[{'connected_gene': 'NTPCR', 'score': 45.8}, {'connected_gene': 'LOC105373201', 'score': 0.37}]
chr1	GH01I232947	232947121	232947818	0.43	[{'connected_gene': 'NTPCR', 'score': 0.77}, {'connected_gene': 'LOC105373201', 'score': 0.28}]
chr1	GH01I232923	232923728	232924699	0.92	[{'connected_gene': 'NTPCR', 'score': 45.78}, {'connected_gene': 'LOC105373201', 'score': 0.39}]
chr1	GH01I232943	232943995	232944144	0.74	[{'connected_gene': 'NTPCR', 'score': 0.44}, {'connected_gene': 'LOC105373201', 'score': 0.29}]
chr1	GH01I232927	232927440	232928632	0.2	[{'connected_gene': 'NTPCR', 'score': 45.79}, {'connected_gene': 'LOC105373201', 'score': 0.37}]
chr1	GH01I232335	232335302	232336385	0.58	[{'connected_gene': 'NTPCR', 'score': 6.15}, {'connected_gene': 'LOC105373196', 'score': 0.31}, {'connected_gene': 'RN7SL299P', 'score': 0.14}]
chr1	GH01I233288	233288473	233296344	2.16	[{'connected_gene': 'PCNX2', 'score': 560.63}, {'connected_gene': 'MAP3K21', 'score': 12.54}, {'connected_gene': 'NTPCR', 'score': 9.88}, {'connected_gene': 'RPS7P3', 'score': 6.47}, {'connected_gene': 'ENSG00000251508', 'score': 0.77}]
chr1	GH01I232888	232888598	232889737	0.2	[{'connected_gene': 'MAP10', 'score': 10.68}, {'connected_gene': 'RNU6-1211P', 'score': 9.89}, {'connected_gene': 'NTPCR', 'score': 6.86}, {'connected_gene': 'PIR56010', 'score': 0.39}, {'connected_gene': 'RNU1-74P', 'score': 0.22}, {'connected_gene': 'GC01M232833', 'score': 0.22}, {'connected_gene': 'LOC101927711', 'score': 0.19}]
chr1	GH01I232612	232612947	232615400	1.05	[{'connected_gene': 'RPS7P3', 'score': 13.63}, {'connected_gene': 'NTPCR', 'score': 9.97}, {'connected_gene': 'GC01P232625', 'score': 0.39}, {'connected_gene': 'SIPA1L2', 'score': 0.37}, {'connected_gene': 'PIR51388', 'score': 0.08}]
chr1	GH01I232868	232868535	232869744	0.97	[{'connected_gene': 'RPS7P3', 'score': 23.25}, {'connected_gene': 'NTPCR', 'score': 18.26}, {'connected_gene': 'PIR56010', 'score': 0.29}, {'connected_gene': 'RNU1-74P', 'score': 0.28}, {'connected_gene': 'GC01M232833', 'score': 0.28}, {'connected_gene': 'LOC101927711', 'score': 0.23}]
chr1	GH01I233635	233635291	233636916	1.1	[{'connected_gene': 'RPS7P3', 'score': 60.21}, {'connected_gene': 'IRF2BP2', 'score': 42.87}, {'connected_gene': 'KCNK1', 'score': 18.9}, {'connected_gene': 'LOC101927765', 'score': 11.07}, {'connected_gene': 'NTPCR', 'score': 9.85}, {'connected_gene': 'MIR4427', 'score': 0.39}, {'connected_gene': 'GC01P233696', 'score': 0.22}]
chr1	GH01I233904	233904095	233906334	1.85	[{'connected_gene': 'SLC35F3', 'score': 550.77}, {'connected_gene': 'PIR54761', 'score': 550.77}, {'connected_gene': 'NTPCR', 'score': 9.94}, {'connected_gene': 'RPS7P3', 'score': 9.87}, {'connected_gene': 'GC01P233935', 'score': 0.29}, {'connected_gene': 'GC01M233807', 'score': 0.28}]
chr1	GH01I232908	232908611	232909643	0.43	[{'connected_gene': 'LOC105373201', 'score': 550.77}, {'connected_gene': 'NTPCR', 'score': 11.99}, {'connected_gene': 'MAP10', 'score': 10.47}, {'connected_gene': 'RNU6-1211P', 'score': 9.4}, {'connected_gene': 'PIR56010', 'score': 0.44}]
chr1	GH01I232910	232910122	232910951	0.2	[{'connected_gene': 'LOC105373201', 'score': 550.77}, {'connected_gene': 'NTPCR', 'score': 12.01}, {'connected_gene': 'MAP10', 'score': 10.46}, {'connected_gene': 'RNU6-1211P', 'score': 9.39}]
chr1	GH01I232917	232917042	232917966	0.31	[{'connected_gene': 'LOC105373201', 'score': 0.44}, {'connected_gene': 'NTPCR', 'score': 0.29}]
chr1	GH01I232919	232919913	232920457	0.2	[{'connected_gene': 'LOC105373201', 'score': 0.44}, {'connected_gene': 'NTPCR', 'score': 0.29}]
chr1	GH01I232900	232900634	232902130	0.38	[{'connected_gene': 'PIR56010', 'score': 550.77}, {'connected_gene': 'NTPCR', 'score': 7.07}, {'connected_gene': 'RNU1-74P', 'score': 0.2}, {'connected_gene': 'GC01M232833', 'score': 0.2}, {'connected_gene': 'LOC101927711', 'score': 0.17}]
chr1	GH01I232902	232902384	232903243	0.43	[{'connected_gene': 'PIR56010', 'score': 550.77}, {'connected_gene': 'NTPCR', 'score': 6.55}, {'connected_gene': 'LOC105373201', 'score': 0.44}, {'connected_gene': 'LOC101927711', 'score': 0.17}]