PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000589630	[[32820993, 32821073], [32822354, 32822964]]	None
ENST00000601719	[[32820999, 32821035], [32822354, 32822850]]	[[32822434, 32822850]]
ENST00000591206	[[32821000, 32821073], [32822354, 32822848], [32823115, 32824064]]	[[32822434, 32822848], [32823115, 32823325]]
ENST00000330501	[[32821000, 32821073], [32822354, 32822848], [32823115, 32823257], [32825225, 32827153]]	[[32822434, 32822848], [32823115, 32823257], [32825225, 32826274]]
ENST00000589420	[[32821014, 32821073], [32823115, 32823257], [32825225, 32825315], [32834195, 32834366], [32837891, 32838013], [32846656, 32847097]]	None
ENST00000261333	[[32821018, 32821073], [32822354, 32822848], [32823115, 32823257], [32825225, 32825315], [32834195, 32834366], [32837891, 32838358]]	[[32822434, 32822848], [32823115, 32823257], [32825225, 32825315], [32834195, 32834366], [32837891, 32837902]]
ENST00000355632	[[32821018, 32821073], [32822354, 32822848], [32823115, 32823257], [32834195, 32834366], [32837891, 32839191]]	[[32822434, 32822848], [32823115, 32823257], [32834195, 32834366], [32837891, 32837902]]
ENST00000585800	[[32821020, 32821654], [32822354, 32822848], [32823115, 32824033]]	[[32822434, 32822848], [32823115, 32823325]]
ENST00000592264	[[32822353, 32822848], [32823115, 32823257], [32837891, 32838358]]	[[32822434, 32822848], [32823115, 32823257], [32837891, 32837902]]
ENST00000588119	[[32822436, 32822905], [32823115, 32823248]]	[[32822436, 32822905], [32823115, 32823248]]
ENST00000590470	[[32822758, 32822916], [32823115, 32823202]]	None
ENST00000591505	[[32834160, 32834366], [32837891, 32838243]]	None
NM_001135178	[[32820993, 32821073], [32822354, 32822848], [32823115, 32823257], [32825225, 32827153]]	[[32822434, 32822848], [32823115, 32823257], [32825225, 32826274]]
NM_032347	[[32820993, 32821073], [32822354, 32822848], [32823115, 32823257], [32825225, 32825315], [32834195, 32834366], [32837891, 32838397]]	[[32822434, 32822848], [32823115, 32823257], [32825225, 32825315], [32834195, 32834366], [32837891, 32837902]]

Promoter

Chrom	Start	End	Description
chr18	32820990	32821031	CAGE_peak_1_at_ZNF397_5end
chr18	32821037	32821057	CAGE_peak_2_at_ZNF397_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr18	GH18I036075	36075478	36076732	1.06	[{'connected_gene': 'ZNF397', 'score': 19.42}, {'connected_gene': 'ELP2', 'score': 13.71}, {'connected_gene': 'RPRD1A', 'score': 13.25}, {'connected_gene': 'ENSG00000268573', 'score': 12.67}, {'connected_gene': 'MOCOS', 'score': 10.74}, {'connected_gene': 'FHOD3', 'score': 10.42}, {'connected_gene': 'ENSG00000267583', 'score': 10.06}, {'connected_gene': 'C18orf21', 'score': 9.98}, {'connected_gene': 'GC18P036078', 'score': 0.77}]
chr18	GH18I035701	35701853	35704553	0.8	[{'connected_gene': 'ZNF397', 'score': 19.44}, {'connected_gene': 'ELP2', 'score': 13.52}, {'connected_gene': 'ENSG00000268573', 'score': 12.69}, {'connected_gene': 'ENSG00000267583', 'score': 10.1}, {'connected_gene': 'GALNT1', 'score': 5.51}, {'connected_gene': 'INO80C', 'score': 4.54}, {'connected_gene': 'LOC105372064', 'score': 0.44}, {'connected_gene': 'GC18P035714', 'score': 0.39}]
chr18	GH18I035412	35412801	35413000	0.38	[{'connected_gene': 'ZNF397', 'score': 14.78}, {'connected_gene': 'ELP2', 'score': 13.94}, {'connected_gene': 'GALNT1', 'score': 11.44}, {'connected_gene': 'LOC105372063', 'score': 0.77}, {'connected_gene': 'ENSG00000267583', 'score': 0.23}]
chr18	GH18I035239	35239977	35242474	2.06	[{'connected_gene': 'ZNF397', 'score': 550.77}, {'connected_gene': 'ENSG00000268573', 'score': 26.86}, {'connected_gene': 'ZNF396', 'score': 6.53}, {'connected_gene': 'ZNF24', 'score': 5.1}, {'connected_gene': 'PIR50065', 'score': 0.44}]
chr18	GH18I035967	35967936	35973780	2.1	[{'connected_gene': 'C18orf21', 'score': 561.08}, {'connected_gene': 'LOC105372066', 'score': 560.46}, {'connected_gene': 'ENSG00000278986', 'score': 550.77}, {'connected_gene': 'ENSG00000268573', 'score': 30.01}, {'connected_gene': 'ZNF397', 'score': 21.84}, {'connected_gene': 'ELP2', 'score': 7.43}, {'connected_gene': 'RPRD1A', 'score': 5.36}, {'connected_gene': 'GC18M035972', 'score': 0.77}, {'connected_gene': 'GC18P035965', 'score': 0.44}]
chr18	GH18I035343	35343193	35346585	2.58	[{'connected_gene': 'ZNF24', 'score': 556.0}, {'connected_gene': 'PIR42340', 'score': 550.77}, {'connected_gene': 'PIR57079', 'score': 550.77}, {'connected_gene': 'GC18P035348', 'score': 550.77}, {'connected_gene': 'ZNF396', 'score': 19.4}, {'connected_gene': 'ZNF397', 'score': 14.94}, {'connected_gene': 'MAPRE2', 'score': 9.25}, {'connected_gene': 'ZNF271P', 'score': 5.26}, {'connected_gene': 'GC18M035337', 'score': 0.44}]
chr18	GH18I036127	36127934	36133133	2.31	[{'connected_gene': 'ELP2', 'score': 588.47}, {'connected_gene': 'SLC39A6', 'score': 550.77}, {'connected_gene': 'ENSG00000268573', 'score': 42.41}, {'connected_gene': 'ZNF397', 'score': 24.3}, {'connected_gene': 'KIAA1328', 'score': 11.6}, {'connected_gene': 'LOC101927809', 'score': 10.84}, {'connected_gene': 'MOCOS', 'score': 9.42}, {'connected_gene': 'LOC791126', 'score': 4.2}, {'connected_gene': 'PIR50550', 'score': 0.31}]
chr18	GH18I035605	35605802	35606399	0.56	[{'connected_gene': 'GALNT1', 'score': 11.9}, {'connected_gene': 'ENSG00000268573', 'score': 11.38}, {'connected_gene': 'ZNF397', 'score': 11.17}, {'connected_gene': 'ENSG00000266965', 'score': 0.39}, {'connected_gene': 'LOC105372065', 'score': 0.19}]
chr18	GH18I035606	35605488	35605563	0.27	[{'connected_gene': 'GALNT1', 'score': 12.9}, {'connected_gene': 'ZNF397', 'score': 1.17}, {'connected_gene': 'ENSG00000266965', 'score': 0.44}, {'connected_gene': 'LOC105372065', 'score': 0.19}]
chr18	GH18I035230	35230957	35231400	1.06	[{'connected_gene': 'ZNF396', 'score': 10.65}, {'connected_gene': 'ZSCAN30', 'score': 4.26}, {'connected_gene': 'ZNF397', 'score': 0.44}, {'connected_gene': 'PIR47170', 'score': 0.44}]
chr18	GH18I034492	34492677	34494800	1.97	[{'connected_gene': 'DTNA', 'score': 550.77}, {'connected_gene': 'ZNF397', 'score': 10.68}, {'connected_gene': 'ZSCAN30', 'score': 4.06}, {'connected_gene': 'RPL10AP13', 'score': 0.18}]
chr18	GH18I035220	35220094	35220200	0.22	[{'connected_gene': 'DTNA', 'score': 2.73}, {'connected_gene': 'ZNF397', 'score': 1.7}, {'connected_gene': 'PIR47170', 'score': 0.77}, {'connected_gene': 'ENSG00000274400', 'score': 0.18}]
chr18	GH18I035495	35495482	35498608	2.35	[{'connected_gene': 'INO80C', 'score': 558.31}, {'connected_gene': 'ENSG00000267140', 'score': 550.77}, {'connected_gene': 'ENSG00000268573', 'score': 87.13}, {'connected_gene': 'ZNF397', 'score': 80.97}, {'connected_gene': 'ZSCAN30', 'score': 53.0}, {'connected_gene': 'ELP2', 'score': 48.88}, {'connected_gene': 'RPRD1A', 'score': 29.99}, {'connected_gene': 'C18orf21', 'score': 20.32}, {'connected_gene': 'ZNF271P', 'score': 11.06}, {'connected_gene': 'ZNF396', 'score': 10.37}, {'connected_gene': 'ENSG00000279074', 'score': 0.39}]
chr18	GH18I035037	35037696	35044297	2.51	[{'connected_gene': 'MAPRE2', 'score': 576.29}, {'connected_gene': 'ZNF397', 'score': 12.72}, {'connected_gene': 'ENSG00000267397', 'score': 4.71}, {'connected_gene': 'ZNF24', 'score': 1.77}, {'connected_gene': 'ENSG00000280096', 'score': 0.26}]
chr18	GH18I034976	34976052	34979998	2.59	[{'connected_gene': 'MAPRE2', 'score': 567.27}, {'connected_gene': 'ZNF397', 'score': 11.56}, {'connected_gene': 'ZNF396', 'score': 3.34}, {'connected_gene': 'ZNF24', 'score': 2.24}, {'connected_gene': 'ENSG00000280096', 'score': 0.15}]
chr18	GH18I035044	35044360	35047225	0.77	[{'connected_gene': 'MAPRE2', 'score': 22.18}, {'connected_gene': 'ZNF397', 'score': 10.23}, {'connected_gene': 'ENSG00000280096', 'score': 0.28}]
chr18	GH18I035092	35092034	35092553	0.67	[{'connected_gene': 'MAPRE2', 'score': 4.54}, {'connected_gene': 'ZNF24', 'score': 2.39}, {'connected_gene': 'ZNF397', 'score': 1.63}, {'connected_gene': 'ENSG00000280096', 'score': 0.39}, {'connected_gene': 'ENSG00000274400', 'score': 0.23}]
chr18	GH18I034947	34947257	34948305	1.2	[{'connected_gene': 'MAPRE2', 'score': 17.85}, {'connected_gene': 'DTNA', 'score': 3.04}, {'connected_gene': 'ZNF397', 'score': 1.3}, {'connected_gene': 'LOC105372061', 'score': 0.26}]
chr18	GH18I034859	34859382	34859750	0.22	[{'connected_gene': 'MAPRE2', 'score': 12.61}, {'connected_gene': 'DTNA', 'score': 10.43}, {'connected_gene': 'ZNF24', 'score': 1.93}, {'connected_gene': 'ZNF397', 'score': 1.21}, {'connected_gene': 'LOC105372061', 'score': 0.25}, {'connected_gene': 'ENSG00000268873', 'score': 0.16}]
chr18	GH18I035249	35249710	35249817	0.22	[{'connected_gene': 'ZSCAN30', 'score': 5.15}, {'connected_gene': 'ZNF397', 'score': 2.71}, {'connected_gene': 'PIR50065', 'score': 0.77}, {'connected_gene': 'PIR48276', 'score': 0.77}]
chr18	GH18I035266	35266817	35268626	1.59	[{'connected_gene': 'ZSCAN30', 'score': 561.94}, {'connected_gene': 'ENSG00000274184', 'score': 550.77}, {'connected_gene': 'ZNF24', 'score': 7.17}, {'connected_gene': 'ENSG00000279989', 'score': 0.39}, {'connected_gene': 'ZNF397', 'score': 0.31}]
chr18	GH18I036094	36094224	36095572	0.46	[{'connected_gene': 'ENSG00000268573', 'score': 16.13}, {'connected_gene': 'ZNF397', 'score': 12.09}, {'connected_gene': 'FHOD3', 'score': 10.68}, {'connected_gene': 'MOCOS', 'score': 10.63}, {'connected_gene': 'LOC105372066', 'score': 10.21}, {'connected_gene': 'C18orf21', 'score': 10.0}, {'connected_gene': 'ELP2', 'score': 6.93}, {'connected_gene': 'RPRD1A', 'score': 5.08}, {'connected_gene': 'GC18M036078', 'score': 0.37}]
chr18	GH18I035246	35246649	35248152	0.46	[{'connected_gene': 'PIR50065', 'score': 550.77}, {'connected_gene': 'ZNF24', 'score': 6.85}, {'connected_gene': 'MAPRE2', 'score': 6.52}, {'connected_gene': 'ZNF396', 'score': 6.28}, {'connected_gene': 'ZNF397', 'score': 0.44}, {'connected_gene': 'PIR48276', 'score': 0.44}]
chr18	GH18I035613	35613105	35620590	1.13	[{'connected_gene': 'ENSG00000268573', 'score': 24.07}, {'connected_gene': 'GALNT1', 'score': 17.07}, {'connected_gene': 'ZNF397', 'score': 13.78}, {'connected_gene': 'SLC39A6', 'score': 4.89}, {'connected_gene': 'ENSG00000266965', 'score': 0.34}, {'connected_gene': 'LOC105372065', 'score': 0.21}]
chr18	GH18I035289	35289144	35291444	2.1	[{'connected_gene': 'ENSG00000268573', 'score': 573.92}, {'connected_gene': 'ZSCAN30', 'score': 555.26}, {'connected_gene': 'ZNF271P', 'score': 550.77}, {'connected_gene': 'ZNF397', 'score': 31.34}, {'connected_gene': 'C18orf21', 'score': 12.57}, {'connected_gene': 'ZNF24', 'score': 8.02}, {'connected_gene': 'GC18M035301', 'score': 0.39}, {'connected_gene': 'PIR53427', 'score': 0.39}]