PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000503335	[[126626522, 126626748], [126666982, 126667116], [126674811, 126674913], [126676221, 126676322], [126705601, 126705694], [126732223, 126732470], [126734367, 126734488], [126738237, 126738374], [126746080, 126746293], [126753329, 126753504], [126754811, 126754932], [126755735, 126755899], [126758361, 126758464], [126769054, 126769201], [126770378, 126770513], [126771052, 126771181], [126774130, 126774259], [126776430, 126776559], [126778689, 126778818], [126781148, 126781385], [126783248, 126783376], [126784790, 126784914], [126790257, 126790302], [126791092, 126791299], [126792819, 126796914]]	[[126667000, 126667116], [126674811, 126674913], [126676221, 126676322], [126705601, 126705694], [126732223, 126732470], [126734367, 126734488], [126738237, 126738374], [126746080, 126746293], [126753329, 126753504], [126754811, 126754932], [126755735, 126755899], [126758361, 126758464], [126769054, 126769201], [126770378, 126770513], [126771052, 126771181], [126774130, 126774259], [126776430, 126776559], [126778689, 126778818], [126781148, 126781385], [126783248, 126783376], [126784790, 126784914], [126790257, 126790302], [126791092, 126791299], [126792819, 126793010]]
ENST00000508365	[[126626537, 126626748], [126666982, 126667116], [126674811, 126674913], [126676221, 126676322], [126705601, 126705694], [126732223, 126732470], [126734367, 126734488], [126738237, 126738374], [126746080, 126746293], [126753329, 126753504], [126754811, 126754932], [126755735, 126755899], [126758361, 126758464], [126760030, 126760473]]	[[126667000, 126667116], [126674811, 126674913], [126676221, 126676322], [126705601, 126705694], [126732223, 126732470], [126734367, 126734488], [126738237, 126738374], [126746080, 126746293], [126753329, 126753504], [126754811, 126754932], [126755735, 126755899], [126758361, 126758464], [126760030, 126760041]]
ENST00000418761	[[126626538, 126626748], [126635687, 126635738], [126666982, 126667116], [126674811, 126674913], [126676221, 126676322], [126705601, 126705694], [126732223, 126732470], [126734367, 126734488], [126738237, 126738374], [126746080, 126746293], [126753329, 126753504], [126754811, 126754932], [126755735, 126755899], [126758361, 126758464], [126760030, 126760296]]	[[126667000, 126667116], [126674811, 126674913], [126676221, 126676322], [126705601, 126705694], [126732223, 126732470], [126734367, 126734488], [126738237, 126738374], [126746080, 126746293], [126753329, 126753504], [126754811, 126754932], [126755735, 126755899], [126758361, 126758464], [126760030, 126760041]]
ENST00000274473	[[126626550, 126626748], [126635687, 126635738], [126666982, 126667116], [126674811, 126674913], [126676221, 126676322], [126705601, 126705694], [126732223, 126732470], [126734367, 126734488], [126738237, 126738374], [126746080, 126746293], [126753329, 126753504], [126754811, 126754932], [126755735, 126755899], [126758361, 126758464], [126769054, 126769201], [126770378, 126770513], [126771052, 126771181], [126774130, 126774259], [126776430, 126776559], [126778689, 126778818], [126781148, 126781385], [126783248, 126783376], [126784790, 126784914], [126790257, 126790302], [126791092, 126791299], [126792819, 126796914]]	[[126667000, 126667116], [126674811, 126674913], [126676221, 126676322], [126705601, 126705694], [126732223, 126732470], [126734367, 126734488], [126738237, 126738374], [126746080, 126746293], [126753329, 126753504], [126754811, 126754932], [126755735, 126755899], [126758361, 126758464], [126769054, 126769201], [126770378, 126770513], [126771052, 126771181], [126774130, 126774259], [126776430, 126776559], [126778689, 126778818], [126781148, 126781385], [126783248, 126783376], [126784790, 126784914], [126790257, 126790302], [126791092, 126791299], [126792819, 126793010]]
ENST00000515002	[[126745283, 126745580], [126746080, 126746293], [126753329, 126753361]]	None
ENST00000506709	[[126758383, 126758464], [126770378, 126770513], [126771052, 126771181], [126774130, 126774259], [126776430, 126776539]]	None
ENST00000510513	[[126780104, 126780479], [126781148, 126781236]]	None
ENST00000510828	[[126780943, 126781081], [126781296, 126781385], [126783248, 126783376], [126784790, 126784914], [126790257, 126790302], [126791092, 126791254]]	None
ENST00000507158	[[126781168, 126781385], [126783248, 126783376], [126784790, 126784894]]	None
ENST00000515622	[[126783319, 126783376], [126784790, 126784914], [126790257, 126790302], [126791092, 126791299], [126801297, 126801429]]	None
NM_001308121	[[126626455, 126626748], [126666982, 126667116], [126674811, 126674913], [126676221, 126676322], [126705601, 126705694], [126732223, 126732470], [126734367, 126734488], [126738237, 126738374], [126746080, 126746293], [126753329, 126753504], [126754811, 126754932], [126755735, 126755899], [126758361, 126758464], [126760030, 126760473]]	[[126667000, 126667116], [126674811, 126674913], [126676221, 126676322], [126705601, 126705694], [126732223, 126732470], [126734367, 126734488], [126738237, 126738374], [126746080, 126746293], [126753329, 126753504], [126754811, 126754932], [126755735, 126755899], [126758361, 126758464], [126760030, 126760041]]
NM_001308119	[[126626455, 126626748], [126635687, 126635738], [126666982, 126667116], [126674811, 126674913], [126676221, 126676322], [126705601, 126705694], [126732223, 126732470], [126734367, 126734488], [126738237, 126738374], [126746080, 126746293], [126753329, 126753504], [126754811, 126754932], [126755735, 126755899], [126758361, 126758464], [126760030, 126760473]]	[[126667000, 126667116], [126674811, 126674913], [126676221, 126676322], [126705601, 126705694], [126732223, 126732470], [126734367, 126734488], [126738237, 126738374], [126746080, 126746293], [126753329, 126753504], [126754811, 126754932], [126755735, 126755899], [126758361, 126758464], [126760030, 126760041]]
NM_001256545	[[126626455, 126626748], [126666982, 126667116], [126674811, 126674913], [126676221, 126676322], [126705601, 126705694], [126732223, 126732470], [126734367, 126734488], [126738237, 126738374], [126746080, 126746293], [126753329, 126753504], [126754811, 126754932], [126755735, 126755899], [126758361, 126758464], [126769054, 126769201], [126770378, 126770513], [126771052, 126771181], [126774130, 126774259], [126776430, 126776559], [126778689, 126778818], [126781148, 126781385], [126783248, 126783376], [126784790, 126784914], [126790257, 126790302], [126791092, 126791299], [126792819, 126796914]]	[[126667000, 126667116], [126674811, 126674913], [126676221, 126676322], [126705601, 126705694], [126732223, 126732470], [126734367, 126734488], [126738237, 126738374], [126746080, 126746293], [126753329, 126753504], [126754811, 126754932], [126755735, 126755899], [126758361, 126758464], [126769054, 126769201], [126770378, 126770513], [126771052, 126771181], [126774130, 126774259], [126776430, 126776559], [126778689, 126778818], [126781148, 126781385], [126783248, 126783376], [126784790, 126784914], [126790257, 126790302], [126791092, 126791299], [126792819, 126793010]]
NM_032446	[[126626455, 126626748], [126635687, 126635738], [126666982, 126667116], [126674811, 126674913], [126676221, 126676322], [126705601, 126705694], [126732223, 126732470], [126734367, 126734488], [126738237, 126738374], [126746080, 126746293], [126753329, 126753504], [126754811, 126754932], [126755735, 126755899], [126758361, 126758464], [126769054, 126769201], [126770378, 126770513], [126771052, 126771181], [126774130, 126774259], [126776430, 126776559], [126778689, 126778818], [126781148, 126781385], [126783248, 126783376], [126784790, 126784914], [126790257, 126790302], [126791092, 126791299], [126792819, 126796914]]	[[126667000, 126667116], [126674811, 126674913], [126676221, 126676322], [126705601, 126705694], [126732223, 126732470], [126734367, 126734488], [126738237, 126738374], [126746080, 126746293], [126753329, 126753504], [126754811, 126754932], [126755735, 126755899], [126758361, 126758464], [126769054, 126769201], [126770378, 126770513], [126771052, 126771181], [126774130, 126774259], [126776430, 126776559], [126778689, 126778818], [126781148, 126781385], [126783248, 126783376], [126784790, 126784914], [126790257, 126790302], [126791092, 126791299], [126792819, 126793010]]

Promoter

Chrom	Start	End	Description
chr5	126564982	126565010	CAGE_peak_3_at_MEGF10_5end
chr5	126626372	126626383	CAGE_peak_6_at_MEGF10_5end
chr5	126626387	126626409	CAGE_peak_4_at_MEGF10_5end
chr5	126626450	126626464	CAGE_peak_5_at_MEGF10_5end
chr5	126626477	126626497	CAGE_peak_2_at_MEGF10_5end
chr5	126626498	126626543	CAGE_peak_1_at_MEGF10_5end
chr5	126781215	126781226	CAGE_peak_12_at_MEGF10_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr5	GH05I127298	127298748	127298927	0.42	[{'connected_gene': 'MEGF10', 'score': 15.95}, {'connected_gene': 'CTXN3', 'score': 2.54}, {'connected_gene': 'LOC105379199', 'score': 0.44}, {'connected_gene': 'ENSG00000249577', 'score': 0.1}]
chr5	GH05I127403	127403020	127403257	0.22	[{'connected_gene': 'MEGF10', 'score': 2.08}, {'connected_gene': 'ENSG00000249577', 'score': 0.21}, {'connected_gene': 'LOC105379199', 'score': 0.14}]
chr5	GH05I127650	127650222	127650529	0.44	[{'connected_gene': 'CTXN3', 'score': 564.16}, {'connected_gene': 'MEGF10', 'score': 2.28}, {'connected_gene': 'LOC105379164', 'score': 0.39}]
chr5	GH05I127357	127357695	127359709	0.54	[{'connected_gene': 'PRRC1', 'score': 15.53}, {'connected_gene': 'PHAX', 'score': 10.5}, {'connected_gene': 'MARCH3', 'score': 7.51}, {'connected_gene': 'LOC105379199', 'score': 0.2}, {'connected_gene': 'ENSG00000249577', 'score': 0.14}, {'connected_gene': 'MEGF10', 'score': 0.13}]
chr5	GH05I127307	127307173	127308553	0.66	[{'connected_gene': 'MARCH3', 'score': 13.82}, {'connected_gene': 'LOC105379199', 'score': 0.37}, {'connected_gene': 'MEGF10', 'score': 0.18}, {'connected_gene': 'ENSG00000249577', 'score': 0.1}]
chr5	GH05I127310	127310519	127313144	0.72	[{'connected_gene': 'MARCH3', 'score': 13.51}, {'connected_gene': 'LOC105379199', 'score': 0.34}, {'connected_gene': 'MEGF10', 'score': 0.18}, {'connected_gene': 'ENSG00000249577', 'score': 0.1}]
chr5	GH05I127351	127351049	127352036	0.2	[{'connected_gene': 'MARCH3', 'score': 16.13}, {'connected_gene': 'LOC105379199', 'score': 0.21}, {'connected_gene': 'ENSG00000249577', 'score': 0.14}, {'connected_gene': 'MEGF10', 'score': 0.13}]
chr5	GH05I127320	127320047	127321165	0.68	[{'connected_gene': 'MARCH3', 'score': 7.0}, {'connected_gene': 'LOC105379199', 'score': 0.31}, {'connected_gene': 'MEGF10', 'score': 0.16}, {'connected_gene': 'ENSG00000249577', 'score': 0.11}]
chr5	GH05I127304	127304948	127306923	0.2	[{'connected_gene': 'MARCH3', 'score': 23.94}, {'connected_gene': 'LOC105379199', 'score': 0.39}, {'connected_gene': 'MEGF10', 'score': 0.18}, {'connected_gene': 'ENSG00000249577', 'score': 0.1}]
chr5	GH05I127308	127308766	127309875	0.31	[{'connected_gene': 'MARCH3', 'score': 14.03}, {'connected_gene': 'LOC105379199', 'score': 0.37}, {'connected_gene': 'MEGF10', 'score': 0.18}, {'connected_gene': 'ENSG00000249577', 'score': 0.1}]
chr5	GH05I127290	127290000	127292233	2.07	[{'connected_gene': 'LOC105379199', 'score': 550.77}, {'connected_gene': 'MEGF10', 'score': 550.21}, {'connected_gene': 'PRRC1', 'score': 13.04}, {'connected_gene': 'MARCH3', 'score': 11.47}, {'connected_gene': 'LOC105379198', 'score': 0.21}]
chr5	GH05I127302	127302227	127303255	0.2	[{'connected_gene': 'LOC105379199', 'score': 0.39}, {'connected_gene': 'MEGF10', 'score': 0.19}, {'connected_gene': 'ENSG00000249577', 'score': 0.1}]
chr5	GH05I127228	127228801	127230200	0.89	[{'connected_gene': 'LOC105379198', 'score': 550.77}, {'connected_gene': 'MEGF10', 'score': 550.77}, {'connected_gene': 'MARCH3', 'score': 10.6}]
chr5	GH05I127257	127257029	127257178	0.31	[{'connected_gene': 'LOC105379198', 'score': 0.31}, {'connected_gene': 'MEGF10', 'score': 0.31}, {'connected_gene': 'LOC105379199', 'score': 0.29}]
chr5	GH05I127410	127410303	127411951	0.56	[{'connected_gene': 'ENSG00000271766', 'score': 11.45}, {'connected_gene': 'MARCH3', 'score': 9.7}, {'connected_gene': 'ENSG00000249577', 'score': 0.23}, {'connected_gene': 'LOC105379199', 'score': 0.13}, {'connected_gene': 'MEGF10', 'score': 0.09}]
chr5	GH05I127401	127401449	127401598	0.2	[{'connected_gene': 'ENSG00000271766', 'score': 7.17}, {'connected_gene': 'ENSG00000249577', 'score': 0.21}, {'connected_gene': 'LOC105379199', 'score': 0.14}, {'connected_gene': 'MEGF10', 'score': 0.09}]
chr5	GH05I127406	127406392	127406990	0.31	[{'connected_gene': 'ENSG00000249577', 'score': 0.22}, {'connected_gene': 'LOC105379199', 'score': 0.13}, {'connected_gene': 'MEGF10', 'score': 0.1}]
chr5	GH05I127447	127447909	127448058	0.38	[{'connected_gene': 'ENSG00000249577', 'score': 0.37}, {'connected_gene': 'LOC105379199', 'score': 0.1}, {'connected_gene': 'MEGF10', 'score': 0.08}]
chr5	GH05I127428	127428357	127429200	0.2	[{'connected_gene': 'ENSG00000249577', 'score': 0.28}, {'connected_gene': 'LOC105379199', 'score': 0.12}, {'connected_gene': 'MEGF10', 'score': 0.08}]
chr5	GH05I127446	127446652	127446917	0.22	[{'connected_gene': 'ENSG00000249577', 'score': 0.37}, {'connected_gene': 'LOC105379199', 'score': 0.1}, {'connected_gene': 'MEGF10', 'score': 0.08}]
chr5	GH05I127369	127369074	127372218	0.72	[{'connected_gene': 'ENSG00000271766', 'score': 7.37}, {'connected_gene': 'LOC105379199', 'score': 0.18}, {'connected_gene': 'ENSG00000249577', 'score': 0.15}, {'connected_gene': 'MEGF10', 'score': 0.11}]