PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000367704	[[173837219, 173837393], [173838062, 173838258], [173839334, 173840286], [173854773, 173855774]]	[[173839363, 173840286], [173854773, 173854777]]
ENST00000432989	[[173837492, 173837543], [173838062, 173838258], [173839337, 173840286], [173842604, 173842776]]	[[173839363, 173840286], [173842604, 173842767]]
ENST00000427304	[[173837492, 173837543], [173838062, 173838258], [173839334, 173840286], [173842604, 173842704], [173854773, 173855774]]	[[173839363, 173840286], [173842604, 173842704], [173854773, 173855262]]
ENST00000367702	[[173837531, 173837543], [173838062, 173838258], [173839334, 173840286], [173842604, 173842781]]	[[173839363, 173840286], [173842604, 173842767]]
ENST00000367701	[[173838093, 173838258], [173839337, 173840286], [173842604, 173842704], [173854773, 173872687]]	[[173839363, 173840286], [173842604, 173842704], [173854773, 173855262]]
NM_001346115	[[173837219, 173837393], [173838062, 173838258], [173839337, 173840286], [173854773, 173855774]]	[[173839363, 173840286], [173854773, 173854777]]
NM_032522	[[173837434, 173837543], [173838062, 173838258], [173839337, 173840286], [173842604, 173842781]]	[[173839363, 173840286], [173842604, 173842767]]
NM_001122770	[[173837434, 173837543], [173838062, 173838258], [173839337, 173840286], [173842604, 173842704], [173854773, 173855774]]	[[173839363, 173840286], [173842604, 173842704], [173854773, 173855262]]

Promoter

Chrom	Start	End	Description
chr1	173837214	173837234	CAGE_peak_6_at_ZBTB37_5end
chr1	173837488	173837526	CAGE_peak_1_at_ZBTB37_5end
chr1	173837572	173837581	CAGE_peak_3_at_ZBTB37_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I174158	174157510	174161177	2.08	[{'connected_gene': 'RABGAP1L', 'score': 572.79}, {'connected_gene': 'LOC102724601', 'score': 550.77}, {'connected_gene': 'RC3H1', 'score': 24.11}, {'connected_gene': 'ANKRD45', 'score': 17.6}, {'connected_gene': 'GAS5', 'score': 16.32}, {'connected_gene': 'ZBTB37', 'score': 10.55}, {'connected_gene': 'RNU7-78P', 'score': 0.21}, {'connected_gene': 'GC01M174104', 'score': 0.2}]
chr1	GH01I173861	173861623	173871896	2.14	[{'connected_gene': 'ZBTB37', 'score': 579.4}, {'connected_gene': 'GC01M174036', 'score': 550.77}, {'connected_gene': 'GC01M174029', 'score': 550.77}, {'connected_gene': 'SNORD80', 'score': 550.77}, {'connected_gene': 'SNORD44', 'score': 550.77}, {'connected_gene': 'GC01M174027', 'score': 550.77}, {'connected_gene': 'SNORD77', 'score': 550.77}, {'connected_gene': 'GC01M174033', 'score': 550.77}, {'connected_gene': 'SNORD74', 'score': 550.77}, {'connected_gene': 'GC01M174030', 'score': 550.77}, {'connected_gene': 'GC01M174035', 'score': 550.77}, {'connected_gene': 'GC01M174026', 'score': 550.77}, {'connected_gene': 'SNORD78', 'score': 550.77}, {'connected_gene': 'SNORD76', 'score': 550.77}, {'connected_gene': 'GC01M174034', 'score': 550.77}, {'connected_gene': 'SNORD75', 'score': 550.77}, {'connected_gene': 'GC01M174031', 'score': 550.77}, {'connected_gene': 'GC01M174038', 'score': 550.77}, {'connected_gene': 'SNORD79', 'score': 550.77}, {'connected_gene': 'RC3H1', 'score': 48.37}, {'connected_gene': 'KLHL20', 'score': 34.98}, {'connected_gene': 'DARS2', 'score': 30.46}, {'connected_gene': 'CENPL', 'score': 21.96}, {'connected_gene': 'GAS5', 'score': 20.32}, {'connected_gene': 'GAS5-AS1', 'score': 18.55}, {'connected_gene': 'ANKRD45', 'score': 13.25}, {'connected_gene': 'SERPINC1', 'score': 11.38}, {'connected_gene': 'RNA5SP67', 'score': 11.38}, {'connected_gene': 'LOC101928673', 'score': 10.81}, {'connected_gene': 'RABGAP1L', 'score': 8.16}, {'connected_gene': 'SNORD47', 'score': 0.77}, {'connected_gene': 'SNORD81', 'score': 0.77}, {'connected_gene': 'GC01M174039', 'score': 0.77}, {'connected_gene': 'GC01M174032', 'score': 0.77}, {'connected_gene': 'GC01M174028', 'score': 0.77}, {'connected_gene': 'GC01M174040', 'score': 0.77}, {'connected_gene': 'GC01P173858', 'score': 0.44}]
chr1	GH01I173526	173526787	173527776	0.78	[{'connected_gene': 'ZBTB37', 'score': 13.98}, {'connected_gene': 'ENSG00000238272', 'score': 11.47}, {'connected_gene': 'PRDX6', 'score': 10.6}, {'connected_gene': 'SLC9C2', 'score': 10.45}, {'connected_gene': 'KLHL20', 'score': 10.04}, {'connected_gene': 'GAS5', 'score': 5.57}, {'connected_gene': 'PIR59510', 'score': 0.29}]
chr1	GH01I173823	173823015	173826053	2.11	[{'connected_gene': 'DARS2', 'score': 577.41}, {'connected_gene': 'CENPL', 'score': 550.77}, {'connected_gene': 'RC3H1', 'score': 26.03}, {'connected_gene': 'KLHL20', 'score': 10.17}, {'connected_gene': 'ZBTB37', 'score': 10.02}, {'connected_gene': 'GAS5', 'score': 7.93}]
chr1	GH01I173940	173940602	173940800	0.28	[{'connected_gene': 'SERPINC1', 'score': 28.32}, {'connected_gene': 'ZBTB37', 'score': 12.73}, {'connected_gene': 'GAS5', 'score': 11.09}, {'connected_gene': 'SNORD81', 'score': 11.08}, {'connected_gene': 'KLHL20', 'score': 9.66}, {'connected_gene': 'RC3H1', 'score': 2.05}, {'connected_gene': 'GC01M174041', 'score': 0.77}, {'connected_gene': 'GC01M174042', 'score': 0.31}]
chr1	GH01I173924	173924911	173927275	0.72	[{'connected_gene': 'ANKRD45', 'score': 15.42}, {'connected_gene': 'GAS5', 'score': 15.29}, {'connected_gene': 'SERPINC1', 'score': 14.91}, {'connected_gene': 'ZBTB37', 'score': 11.17}, {'connected_gene': 'SNORD81', 'score': 11.15}, {'connected_gene': 'CENPL', 'score': 10.36}, {'connected_gene': 'DARS2', 'score': 10.36}, {'connected_gene': 'KLHL20', 'score': 9.42}, {'connected_gene': 'RNA5SP67', 'score': 0.44}, {'connected_gene': 'GC01M174041', 'score': 0.39}]
chr1	GH01I174020	174020333	174024197	1.77	[{'connected_gene': 'RC3H1', 'score': 550.77}, {'connected_gene': 'LOC105371620', 'score': 550.77}, {'connected_gene': 'ANKRD45', 'score': 17.26}, {'connected_gene': 'ZBTB37', 'score': 9.87}, {'connected_gene': 'GAS5', 'score': 4.18}, {'connected_gene': 'RC3H1-IT1', 'score': 0.44}]
chr1	GH01I174015	174015055	174015265	0.23	[{'connected_gene': 'RC3H1-IT1', 'score': 550.77}, {'connected_gene': 'ZBTB37', 'score': 13.6}, {'connected_gene': 'SERPINC1', 'score': 12.43}, {'connected_gene': 'GAS5', 'score': 10.51}, {'connected_gene': 'SNORD81', 'score': 10.5}, {'connected_gene': 'RC3H1', 'score': 7.24}, {'connected_gene': 'GPR52', 'score': 1.4}, {'connected_gene': 'GC01M174037', 'score': 0.25}, {'connected_gene': 'RNA5SP68', 'score': 0.25}]