PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000538717	[[10326102, 10327429]]	None
ENST00000475197	[[10326102, 10327430]]	None
NR_026829	[[10326102, 10327430]]	None

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I010284	10284146	10285346	0.38	[{'connected_gene': 'LINC00852', 'score': 559.6}, {'connected_gene': 'GC03P010614', 'score': 550.77}, {'connected_gene': 'GC03P010613', 'score': 550.77}, {'connected_gene': 'GC03P010612', 'score': 550.77}, {'connected_gene': 'GHRLOS', 'score': 27.14}, {'connected_gene': 'ENSG00000272410', 'score': 0.28}]
chr3	GH03I010389	10389812	10392149	0.84	[{'connected_gene': 'LINC00852', 'score': 5.35}, {'connected_gene': 'MIR885', 'score': 0.77}, {'connected_gene': 'GC03M010355', 'score': 0.44}, {'connected_gene': 'ATP2B2', 'score': 0.06}]
chr3	GH03I009889	9889617	9892018	2.28	[{'connected_gene': 'JAGN1', 'score': 576.7}, {'connected_gene': 'BRPF1', 'score': 50.39}, {'connected_gene': 'RAD18', 'score': 45.77}, {'connected_gene': 'SETD5', 'score': 35.53}, {'connected_gene': 'FANCD2', 'score': 23.37}, {'connected_gene': 'TTLL3', 'score': 22.61}, {'connected_gene': 'GHRLOS', 'score': 20.89}, {'connected_gene': 'BRK1', 'score': 12.84}, {'connected_gene': 'PRRT3', 'score': 10.44}, {'connected_gene': 'LINC00852', 'score': 10.43}, {'connected_gene': 'SEC13', 'score': 10.31}, {'connected_gene': 'IL17RC', 'score': 8.3}, {'connected_gene': 'GC03P009922', 'score': 0.44}, {'connected_gene': 'GC03M009835', 'score': 0.31}]
chr3	GH03I010114	10114828	10117218	2.06	[{'connected_gene': 'BRK1', 'score': 578.66}, {'connected_gene': 'BRPF1', 'score': 23.26}, {'connected_gene': 'TTLL3', 'score': 21.25}, {'connected_gene': 'SETD5', 'score': 16.45}, {'connected_gene': 'SEC13', 'score': 11.25}, {'connected_gene': 'FANCD2', 'score': 10.86}, {'connected_gene': 'GHRLOS', 'score': 10.46}, {'connected_gene': 'LINC00852', 'score': 10.28}, {'connected_gene': 'JAGN1', 'score': 10.28}, {'connected_gene': 'GC03P010136', 'score': 0.34}]
chr3	GH03I009394	9394089	9403893	2.34	[{'connected_gene': 'SETD5', 'score': 635.98}, {'connected_gene': 'THUMPD3-AS1', 'score': 577.65}, {'connected_gene': 'GC03P009403', 'score': 550.77}, {'connected_gene': 'BRPF1', 'score': 126.97}, {'connected_gene': 'RAD18', 'score': 89.41}, {'connected_gene': 'GHRLOS', 'score': 40.99}, {'connected_gene': 'TTLL3', 'score': 40.01}, {'connected_gene': 'FANCD2', 'score': 39.59}, {'connected_gene': 'JAGN1', 'score': 31.13}, {'connected_gene': 'SEC13', 'score': 29.09}, {'connected_gene': 'SRGAP3', 'score': 21.03}, {'connected_gene': 'THUMPD3', 'score': 20.58}, {'connected_gene': 'LINC00852', 'score': 18.9}, {'connected_gene': 'TATDN2', 'score': 12.94}, {'connected_gene': 'EMC3-AS1', 'score': 12.79}, {'connected_gene': 'BRK1', 'score': 11.02}, {'connected_gene': 'ENSG00000269886', 'score': 10.92}, {'connected_gene': 'RPUSD3', 'score': 10.77}, {'connected_gene': 'OGG1', 'score': 10.51}]
chr3	GH03I010185	10185708	10188200	1.23	[{'connected_gene': 'IRAK2', 'score': 34.31}, {'connected_gene': 'GHRLOS', 'score': 27.41}, {'connected_gene': 'TATDN2', 'score': 14.15}, {'connected_gene': 'GHRL', 'score': 11.27}, {'connected_gene': 'FANCD2OS', 'score': 11.14}, {'connected_gene': 'LINC00852', 'score': 11.11}, {'connected_gene': 'VHL', 'score': 3.9}, {'connected_gene': 'GC03M010202', 'score': 0.37}]
chr3	GH03I010188	10188774	10200915	1.86	[{'connected_gene': 'BRPF1', 'score': 82.83}, {'connected_gene': 'SETD5', 'score': 73.25}, {'connected_gene': 'IRAK2', 'score': 60.93}, {'connected_gene': 'GHRLOS', 'score': 48.14}, {'connected_gene': 'LINC00852', 'score': 30.38}, {'connected_gene': 'TATDN2', 'score': 26.94}, {'connected_gene': 'FANCD2', 'score': 22.57}, {'connected_gene': 'GHRL', 'score': 19.15}, {'connected_gene': 'TTLL3', 'score': 18.85}, {'connected_gene': 'SEC13', 'score': 18.54}, {'connected_gene': 'VHL', 'score': 18.5}, {'connected_gene': 'JAGN1', 'score': 13.72}, {'connected_gene': 'EMC3-AS1', 'score': 12.84}, {'connected_gene': 'CYCSP10', 'score': 12.78}, {'connected_gene': 'ENSG00000206567', 'score': 11.58}, {'connected_gene': 'THUMPD3', 'score': 11.34}, {'connected_gene': 'FANCD2OS', 'score': 11.3}, {'connected_gene': 'PRRT3', 'score': 11.19}, {'connected_gene': 'BRK1', 'score': 10.76}, {'connected_gene': 'ENSG00000269894', 'score': 10.57}, {'connected_gene': 'OGG1', 'score': 10.5}, {'connected_gene': 'RPUSD3', 'score': 10.16}, {'connected_gene': 'THUMPD3-AS1', 'score': 10.12}, {'connected_gene': 'CAMK1', 'score': 5.94}, {'connected_gene': 'ARPC4', 'score': 1.57}, {'connected_gene': 'GC03M010202', 'score': 0.39}]
chr3	GH03I009362	9362110	9364294	2.12	[{'connected_gene': 'SRGAP3', 'score': 575.39}, {'connected_gene': 'THUMPD3', 'score': 562.63}, {'connected_gene': 'ENSG00000254485', 'score': 550.77}, {'connected_gene': 'GC03M009360', 'score': 550.77}, {'connected_gene': 'THUMPD3-AS1', 'score': 30.54}, {'connected_gene': 'RAD18', 'score': 26.88}, {'connected_gene': 'BRPF1', 'score': 25.24}, {'connected_gene': 'SETD5', 'score': 24.63}, {'connected_gene': 'TTLL3', 'score': 11.74}, {'connected_gene': 'FANCD2', 'score': 10.72}, {'connected_gene': 'LINC00852', 'score': 10.21}, {'connected_gene': 'GHRLOS', 'score': 10.17}, {'connected_gene': 'PRRT3-AS1', 'score': 6.56}]
chr3	GH03I010461	10461832	10467140	0.38	[{'connected_gene': 'FANCD2', 'score': 17.3}, {'connected_gene': 'BRPF1', 'score': 11.83}, {'connected_gene': 'MIR885', 'score': 11.35}, {'connected_gene': 'TTLL3', 'score': 10.5}, {'connected_gene': 'LINC00852', 'score': 5.57}, {'connected_gene': 'GHRL', 'score': 4.91}, {'connected_gene': 'GC03P010586', 'score': 0.29}, {'connected_gene': 'GC03M010552', 'score': 0.17}, {'connected_gene': 'ATP2B2', 'score': 0.07}]
chr3	GH03I011117	11117712	11118893	0.67	[{'connected_gene': 'TAMM41', 'score': 62.77}, {'connected_gene': 'ENSG00000271716', 'score': 38.61}, {'connected_gene': 'GHRLOS', 'score': 21.85}, {'connected_gene': 'VGLL4', 'score': 10.71}, {'connected_gene': 'LINC00852', 'score': 10.6}, {'connected_gene': 'SEC13', 'score': 9.69}, {'connected_gene': 'HRH1', 'score': 0.37}, {'connected_gene': 'LOC101927467', 'score': 0.22}]
chr3	GH03I010263	10263626	10264646	1.12	[{'connected_gene': 'GHRLOS', 'score': 20.9}, {'connected_gene': 'LINC00852', 'score': 12.17}, {'connected_gene': 'GHRL', 'score': 12.02}, {'connected_gene': 'IRAK2', 'score': 10.88}, {'connected_gene': 'IL17RE', 'score': 10.62}, {'connected_gene': 'IL17RC', 'score': 10.62}, {'connected_gene': 'RNU6-882P', 'score': 10.61}, {'connected_gene': 'PRRT3', 'score': 10.38}, {'connected_gene': 'PIR57384', 'score': 0.77}, {'connected_gene': 'PIR32054', 'score': 0.44}, {'connected_gene': 'ENSG00000272410', 'score': 0.39}, {'connected_gene': 'TATDN2', 'score': 0.37}]
chr3	GH03I010221	10221509	10227097	1.7	[{'connected_gene': 'GHRLOS', 'score': 15.77}, {'connected_gene': 'CYCSP10', 'score': 10.92}, {'connected_gene': 'ENSG00000269886', 'score': 9.8}, {'connected_gene': 'IRAK2', 'score': 7.48}, {'connected_gene': 'GHRL', 'score': 5.19}, {'connected_gene': 'LINC00852', 'score': 4.85}, {'connected_gene': 'TATDN2', 'score': 4.52}, {'connected_gene': 'VHL', 'score': 3.25}, {'connected_gene': 'BRPF1', 'score': 1.45}, {'connected_gene': 'GC03P010218', 'score': 0.44}]
chr3	GH03I010201	10201193	10207849	1.63	[{'connected_gene': 'GC03M010202', 'score': 550.77}, {'connected_gene': 'IRAK2', 'score': 24.19}, {'connected_gene': 'TATDN2', 'score': 15.85}, {'connected_gene': 'VHL', 'score': 15.48}, {'connected_gene': 'GHRLOS', 'score': 15.31}, {'connected_gene': 'ARPC4', 'score': 14.0}, {'connected_gene': 'FANCD2OS', 'score': 11.28}, {'connected_gene': 'GHRL', 'score': 10.65}, {'connected_gene': 'SEC13', 'score': 9.83}, {'connected_gene': 'CAMK1', 'score': 9.61}, {'connected_gene': 'TADA3', 'score': 9.28}, {'connected_gene': 'ARPC4-TTLL3', 'score': 9.28}, {'connected_gene': 'LINC00852', 'score': 4.91}]
chr3	GH03I009975	9975795	9980631	1.47	[{'connected_gene': 'PIR57234', 'score': 550.77}, {'connected_gene': 'FANCD2', 'score': 22.17}, {'connected_gene': 'TTLL3', 'score': 21.73}, {'connected_gene': 'BRPF1', 'score': 19.79}, {'connected_gene': 'THUMPD3-AS1', 'score': 19.48}, {'connected_gene': 'BRK1', 'score': 16.36}, {'connected_gene': 'SETD5', 'score': 15.45}, {'connected_gene': 'PRRT3', 'score': 11.75}, {'connected_gene': 'CIDECP', 'score': 11.48}, {'connected_gene': 'ENSG00000269894', 'score': 11.31}, {'connected_gene': 'IL17RE', 'score': 11.1}, {'connected_gene': 'RPUSD3', 'score': 10.94}, {'connected_gene': 'VHL', 'score': 10.83}, {'connected_gene': 'JAGN1', 'score': 10.55}, {'connected_gene': 'LINC00852', 'score': 10.24}, {'connected_gene': 'TADA3', 'score': 10.12}, {'connected_gene': 'ARPC4', 'score': 10.12}, {'connected_gene': 'ARPC4-TTLL3', 'score': 10.12}, {'connected_gene': 'GHRL', 'score': 10.11}, {'connected_gene': 'IRAK2', 'score': 9.9}, {'connected_gene': 'EMC3-AS1', 'score': 0.44}, {'connected_gene': 'EMC3', 'score': 0.29}]
chr3	GH03I010287	10287017	10287206	0.68	[{'connected_gene': 'GC03P010614', 'score': 550.77}, {'connected_gene': 'GC03P010613', 'score': 550.77}, {'connected_gene': 'GC03P010612', 'score': 550.77}, {'connected_gene': 'ENSG00000276678', 'score': 550.77}, {'connected_gene': 'GHRLOS', 'score': 25.9}, {'connected_gene': 'LINC00852', 'score': 9.3}, {'connected_gene': 'GHRL', 'score': 0.44}]