PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000353317	[[67039130, 67039671], [67040538, 67040711], [67047224, 67047390], [67049329, 67049425], [67061879, 67062113], [67062451, 67062474], [67062576, 67062701], [67064611, 67064862], [67086705, 67087720]]	[[67039503, 67039671], [67040538, 67040711], [67047224, 67047390], [67049329, 67049425], [67061879, 67062113], [67062451, 67062474], [67062576, 67062701], [67064611, 67064862], [67086705, 67086828]]
ENST00000315962	[[67039130, 67039671], [67040538, 67040711], [67047224, 67047390], [67049329, 67049425], [67061879, 67062113], [67062451, 67062474], [67062576, 67062701], [67064611, 67064862], [67066281, 67066569], [67086705, 67087720]]	[[67039503, 67039671], [67040538, 67040711], [67047224, 67047390], [67049329, 67049425], [67061879, 67062113], [67062451, 67062474], [67062576, 67062701], [67064611, 67064862], [67066281, 67066569], [67086705, 67086828]]
ENST00000276573	[[67039277, 67039671], [67040538, 67040711], [67047224, 67047390], [67049329, 67049425], [67061879, 67062113], [67062451, 67062474], [67062576, 67062701], [67064611, 67064862], [67066281, 67066569], [67067857, 67067945], [67086705, 67086827]]	[[67039503, 67039671], [67040538, 67040711], [67047224, 67047390], [67049329, 67049425], [67061879, 67062113], [67062451, 67062474], [67062576, 67062701], [67064611, 67064862], [67066281, 67066569], [67067857, 67067945], [67086705, 67086716]]
ENST00000350034	[[67039277, 67039671], [67040538, 67040711], [67047224, 67047390], [67049329, 67049425], [67086705, 67087053]]	[[67039503, 67039671], [67040538, 67040711], [67047224, 67047390], [67049329, 67049425], [67086705, 67086828]]
ENST00000517647	[[67064532, 67064862], [67086705, 67087240]]	None
NM_184087	[[67039277, 67039671], [67040538, 67040711], [67047224, 67047390], [67049329, 67049425], [67086705, 67087720]]	[[67039503, 67039671], [67040538, 67040711], [67047224, 67047390], [67049329, 67049425], [67086705, 67086828]]
NM_184086	[[67039277, 67039671], [67040538, 67040711], [67047224, 67047390], [67049329, 67049425], [67061879, 67062113], [67062451, 67062474], [67062576, 67062701], [67064611, 67064862], [67086705, 67087720]]	[[67039503, 67039671], [67040538, 67040711], [67047224, 67047390], [67049329, 67049425], [67061879, 67062113], [67062451, 67062474], [67062576, 67062701], [67064611, 67064862], [67086705, 67086828]]
NM_184085	[[67039277, 67039671], [67040538, 67040711], [67047224, 67047390], [67049329, 67049425], [67061879, 67062113], [67062451, 67062474], [67062576, 67062701], [67064611, 67064862], [67066281, 67066569], [67086705, 67087720]]	[[67039503, 67039671], [67040538, 67040711], [67047224, 67047390], [67049329, 67049425], [67061879, 67062113], [67062451, 67062474], [67062576, 67062701], [67064611, 67064862], [67066281, 67066569], [67086705, 67086828]]
NM_033058	[[67039277, 67039671], [67040538, 67040711], [67047224, 67047390], [67049329, 67049425], [67061879, 67062113], [67062451, 67062474], [67062576, 67062701], [67064611, 67064862], [67066281, 67066569], [67067857, 67067945], [67086705, 67087720]]	[[67039503, 67039671], [67040538, 67040711], [67047224, 67047390], [67049329, 67049425], [67061879, 67062113], [67062451, 67062474], [67062576, 67062701], [67064611, 67064862], [67066281, 67066569], [67067857, 67067945], [67086705, 67086716]]

Promoter

Chrom	Start	End	Description
chr8	67039167	67039176	CAGE_peak_7_at_TRIM55_5end
chr8	67039205	67039215	CAGE_peak_5_at_TRIM55_5end
chr8	67039329	67039377	CAGE_peak_1_at_TRIM55_5end
chr8	67039422	67039433	CAGE_peak_4_at_TRIM55_5end
chr8	67039452	67039469	CAGE_peak_2_at_TRIM55_5end
chr8	67039474	67039487	CAGE_peak_3_at_TRIM55_5end
chr8	67064546	67064556	CAGE_peak_9_at_TRIM55_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr8	GH08I066041	66041801	66042815	0.51	[{'connected_gene': 'DNAJC5B', 'score': 11.63}, {'connected_gene': 'CRH', 'score': 10.88}, {'connected_gene': 'TRIM55', 'score': 10.32}, {'connected_gene': 'ENSG00000272010', 'score': 6.39}, {'connected_gene': 'LOC105375883', 'score': 0.37}, {'connected_gene': 'GC08P066013', 'score': 0.31}, {'connected_gene': 'GC08M066089', 'score': 0.22}]
chr8	GH08I066171	66171538	66173935	0.49	[{'connected_gene': 'TRIM55', 'score': 11.53}, {'connected_gene': 'RRS1', 'score': 10.15}, {'connected_gene': 'ADHFE1', 'score': 10.15}, {'connected_gene': 'RRS1-AS1', 'score': 10.15}, {'connected_gene': 'LINC00967', 'score': 6.82}, {'connected_gene': 'GC08P066170', 'score': 0.77}, {'connected_gene': 'CRH', 'score': 0.44}, {'connected_gene': 'GC08P066013', 'score': 0.1}]
chr8	GH08I066118	66118436	66131399	2.22	[{'connected_gene': 'TRIM55', 'score': 550.39}, {'connected_gene': 'CRH', 'score': 11.16}, {'connected_gene': 'PIR59286', 'score': 0.39}, {'connected_gene': 'GC08P066148', 'score': 0.39}, {'connected_gene': 'GC08P066144', 'score': 0.39}, {'connected_gene': 'GC08P066170', 'score': 0.25}, {'connected_gene': 'GC08P066013', 'score': 0.14}]
chr8	GH08I066164	66164043	66164684	0.2	[{'connected_gene': 'TRIM55', 'score': 11.26}, {'connected_gene': 'GC08P066170', 'score': 0.44}, {'connected_gene': 'PIR59286', 'score': 0.23}, {'connected_gene': 'GC08P066148', 'score': 0.23}, {'connected_gene': 'GC08P066144', 'score': 0.23}, {'connected_gene': 'GC08P066013', 'score': 0.1}]
chr8	GH08I066151	66151895	66152977	0.59	[{'connected_gene': 'CSPP1', 'score': 15.71}, {'connected_gene': 'CRH', 'score': 11.59}, {'connected_gene': 'ENSG00000250869', 'score': 11.37}, {'connected_gene': 'TRIM55', 'score': 11.35}, {'connected_gene': 'C8orf44', 'score': 10.24}, {'connected_gene': 'ARMC1', 'score': 10.0}, {'connected_gene': 'LINC00967', 'score': 5.03}, {'connected_gene': 'GC08P066170', 'score': 0.37}, {'connected_gene': 'PIR59286', 'score': 0.28}, {'connected_gene': 'GC08P066144', 'score': 0.28}, {'connected_gene': 'GC08P066148', 'score': 0.28}, {'connected_gene': 'GC08P066013', 'score': 0.12}]
chr8	GH08I066146	66146390	66147883	0.2	[{'connected_gene': 'CRH', 'score': 11.71}, {'connected_gene': 'TRIM55', 'score': 11.67}, {'connected_gene': 'C8orf46', 'score': 4.88}, {'connected_gene': 'LINC00967', 'score': 4.74}, {'connected_gene': 'GC08P066170', 'score': 0.34}, {'connected_gene': 'PIR59286', 'score': 0.29}, {'connected_gene': 'GC08P066144', 'score': 0.29}, {'connected_gene': 'GC08P066148', 'score': 0.29}, {'connected_gene': 'GC08P066013', 'score': 0.12}]
chr8	GH08I066157	66155906	66160152	0.63	[{'connected_gene': 'CRH', 'score': 12.18}, {'connected_gene': 'TRIM55', 'score': 11.44}, {'connected_gene': 'LINC00967', 'score': 5.04}, {'connected_gene': 'GC08P066170', 'score': 0.39}, {'connected_gene': 'PIR59286', 'score': 0.26}, {'connected_gene': 'GC08P066148', 'score': 0.26}, {'connected_gene': 'GC08P066144', 'score': 0.26}, {'connected_gene': 'GC08P066013', 'score': 0.11}]
chr8	GH08I066105	66105766	66105955	1.04	[{'connected_gene': 'CRH', 'score': 10.74}, {'connected_gene': 'GC08M066089', 'score': 0.77}, {'connected_gene': 'TRIM55', 'score': 0.44}, {'connected_gene': 'TRY-GTA5-1', 'score': 0.44}, {'connected_gene': 'GC08P066013', 'score': 0.16}]
chr8	GH08I066156	66155066	66155215	0.2	[{'connected_gene': 'CRH', 'score': 11.62}, {'connected_gene': 'TRIM55', 'score': 11.17}, {'connected_gene': 'GC08P066170', 'score': 0.37}, {'connected_gene': 'PIR59286', 'score': 0.26}, {'connected_gene': 'GC08P066148', 'score': 0.26}, {'connected_gene': 'GC08P066144', 'score': 0.26}, {'connected_gene': 'GC08P066013', 'score': 0.11}]
chr8	GH08I066131	66131957	66134175	1.23	[{'connected_gene': 'CRH', 'score': 11.2}, {'connected_gene': 'PIR59286', 'score': 0.37}, {'connected_gene': 'GC08P066148', 'score': 0.37}, {'connected_gene': 'GC08P066144', 'score': 0.37}, {'connected_gene': 'TRIM55', 'score': 0.34}, {'connected_gene': 'GC08P066170', 'score': 0.28}, {'connected_gene': 'GC08P066013', 'score': 0.13}]
chr8	GH08I066155	66155553	66155675	0.4	[{'connected_gene': 'CRH', 'score': 12.18}, {'connected_gene': 'TRIM55', 'score': 11.17}, {'connected_gene': 'GC08P066170', 'score': 0.39}, {'connected_gene': 'PIR59286', 'score': 0.26}, {'connected_gene': 'GC08P066148', 'score': 0.26}, {'connected_gene': 'GC08P066144', 'score': 0.26}, {'connected_gene': 'GC08P066013', 'score': 0.11}]
chr8	GH08I066103	66103059	66104284	0.43	[{'connected_gene': 'CRH', 'score': 11.08}, {'connected_gene': 'RRS1', 'score': 10.02}, {'connected_gene': 'ADHFE1', 'score': 10.02}, {'connected_gene': 'RRS1-AS1', 'score': 10.02}, {'connected_gene': 'GC08M066089', 'score': 0.77}, {'connected_gene': 'TRIM55', 'score': 0.44}, {'connected_gene': 'TRY-GTA5-1', 'score': 0.44}, {'connected_gene': 'GC08P066013', 'score': 0.16}]
chr8	GH08I066165	66165694	66169362	0.58	[{'connected_gene': 'LINC00967', 'score': 17.02}, {'connected_gene': 'TRIM55', 'score': 11.55}, {'connected_gene': 'ADHFE1', 'score': 10.15}, {'connected_gene': 'RRS1', 'score': 10.15}, {'connected_gene': 'RRS1-AS1', 'score': 10.15}, {'connected_gene': 'GC08P066170', 'score': 0.77}, {'connected_gene': 'PIR59286', 'score': 0.23}, {'connected_gene': 'GC08P066144', 'score': 0.23}, {'connected_gene': 'GC08P066148', 'score': 0.23}, {'connected_gene': 'GC08P066013', 'score': 0.1}]
chr8	GH08I066139	66139126	66139275	0.4	[{'connected_gene': 'TRY-GTA5-1', 'score': 12.3}, {'connected_gene': 'CRH', 'score': 10.93}, {'connected_gene': 'RRS1', 'score': 10.27}, {'connected_gene': 'RRS1-AS1', 'score': 10.27}, {'connected_gene': 'ADHFE1', 'score': 10.27}, {'connected_gene': 'PIR59286', 'score': 0.31}, {'connected_gene': 'GC08P066144', 'score': 0.31}, {'connected_gene': 'GC08P066148', 'score': 0.31}, {'connected_gene': 'TRIM55', 'score': 0.31}, {'connected_gene': 'GC08P066170', 'score': 0.29}, {'connected_gene': 'GC08P066013', 'score': 0.13}]
chr8	GH08I066136	66136874	66138209	0.51	[{'connected_gene': 'TRY-GTA5-1', 'score': 12.32}, {'connected_gene': 'CRH', 'score': 10.92}, {'connected_gene': 'ADHFE1', 'score': 10.27}, {'connected_gene': 'RRS1', 'score': 10.27}, {'connected_gene': 'RRS1-AS1', 'score': 10.27}, {'connected_gene': 'PIR59286', 'score': 0.34}, {'connected_gene': 'GC08P066144', 'score': 0.34}, {'connected_gene': 'GC08P066148', 'score': 0.34}, {'connected_gene': 'TRIM55', 'score': 0.34}, {'connected_gene': 'GC08P066170', 'score': 0.29}, {'connected_gene': 'GC08P066013', 'score': 0.13}]
chr8	GH08I066141	66141401	66143580	1.26	[{'connected_gene': 'TRY-GTA5-1', 'score': 12.3}, {'connected_gene': 'CRH', 'score': 10.97}, {'connected_gene': 'ADHFE1', 'score': 10.27}, {'connected_gene': 'RRS1', 'score': 10.27}, {'connected_gene': 'RRS1-AS1', 'score': 10.27}, {'connected_gene': 'LINC00967', 'score': 5.4}, {'connected_gene': 'GC08P066170', 'score': 0.31}, {'connected_gene': 'PIR59286', 'score': 0.31}, {'connected_gene': 'GC08P066144', 'score': 0.31}, {'connected_gene': 'GC08P066148', 'score': 0.31}, {'connected_gene': 'TRIM55', 'score': 0.31}, {'connected_gene': 'GC08P066013', 'score': 0.13}]
chr8	GH08I066112	66112302	66116057	1.79	[{'connected_gene': 'TRY-GTA5-2', 'score': 550.77}, {'connected_gene': 'PIR37716', 'score': 550.77}, {'connected_gene': 'PIR59286', 'score': 550.77}, {'connected_gene': 'GC08P066144', 'score': 550.77}, {'connected_gene': 'GC08P066148', 'score': 550.77}, {'connected_gene': 'TRIM55', 'score': 550.77}, {'connected_gene': 'TRY-GTA5-1', 'score': 550.77}, {'connected_gene': 'C8orf44', 'score': 21.6}, {'connected_gene': 'CSPP1', 'score': 21.31}, {'connected_gene': 'LOC100288001', 'score': 15.48}, {'connected_gene': 'MCMDC2', 'score': 9.83}, {'connected_gene': 'ADHFE1', 'score': 4.03}, {'connected_gene': 'GC08P066013', 'score': 0.15}]
chr8	GH08I066132	66131591	66131875	0.4	[{'connected_gene': 'PIR59286', 'score': 0.37}, {'connected_gene': 'GC08P066148', 'score': 0.37}, {'connected_gene': 'TRIM55', 'score': 0.37}, {'connected_gene': 'GC08P066144', 'score': 0.37}, {'connected_gene': 'GC08P066170', 'score': 0.28}, {'connected_gene': 'GC08P066013', 'score': 0.13}]