PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000533208	[[44087474, 44087562], [44089177, 44089328], [44092805, 44092865], [44094996, 44095067], [44096161, 44096231], [44097075, 44097142], [44098872, 44099249]]	None
ENST00000524990	[[44087728, 44087872], [44089177, 44089465], [44092805, 44092865], [44094996, 44095067]]	[[44089177, 44089465], [44092805, 44092865], [44094996, 44095067]]
ENST00000263776	[[44087817, 44088251], [44089177, 44089465], [44092805, 44092865], [44094996, 44095067], [44096161, 44096231], [44097075, 44097142], [44098828, 44098926], [44099394, 44099472], [44100233, 44100334], [44101080, 44101170], [44102569, 44102615], [44102728, 44102870], [44104718, 44104861], [44104973, 44105127], [44105244, 44105764]]	[[44089177, 44089465], [44092805, 44092865], [44094996, 44095067], [44096161, 44096231], [44097075, 44097142], [44098828, 44098926], [44099394, 44099472], [44100233, 44100334], [44101080, 44101170], [44102569, 44102615], [44102728, 44102870], [44104718, 44104861], [44104973, 44105127], [44105244, 44105342]]
ENST00000432284	[[44087874, 44088251], [44089177, 44089465], [44092805, 44092865], [44096161, 44096231], [44097075, 44097142], [44098828, 44098953]]	[[44089177, 44089465], [44092805, 44092865], [44096161, 44096231], [44097075, 44097134]]
ENST00000527603	[[44088073, 44088251], [44089177, 44089324], [44092805, 44092865], [44094893, 44095067], [44096161, 44096231], [44097075, 44097406]]	None
ENST00000526577	[[44088085, 44088251], [44089177, 44089465], [44092805, 44092865], [44094996, 44095085], [44096161, 44096231], [44097075, 44097142], [44098828, 44098995]]	None
ENST00000533404	[[44088678, 44088846], [44089177, 44089409]]	[[44089177, 44089409]]
ENST00000531940	[[44096179, 44096231], [44097075, 44097142], [44098828, 44098926], [44099394, 44100334], [44101080, 44101157]]	None
ENST00000527346	[[44097080, 44097142], [44098872, 44101170], [44102569, 44102615], [44102728, 44102870], [44104718, 44104861], [44104973, 44105127], [44105244, 44105772]]	None
ENST00000532122	[[44100887, 44101170], [44102569, 44102615], [44102728, 44102870], [44103614, 44103670]]	None
ENST00000531190	[[44100887, 44101170], [44102569, 44102615], [44102728, 44102870], [44103614, 44103742], [44104718, 44104758]]	None
ENST00000527557	[[44101078, 44101170], [44102569, 44102615], [44102728, 44102870], [44103614, 44103731]]	None
ENST00000531505	[[44102059, 44102870], [44104718, 44104820]]	None
ENST00000534035	[[44102567, 44102615], [44102728, 44102870], [44104718, 44104861], [44105244, 44105443]]	None
NM_001127219	[[44087728, 44087872], [44089177, 44089465], [44092805, 44092865], [44094996, 44095067], [44096161, 44096231], [44097075, 44097142], [44098828, 44098926], [44099394, 44099472], [44100233, 44100334], [44101080, 44101170], [44102569, 44102615], [44102728, 44102870], [44104718, 44104861], [44104973, 44105127], [44105244, 44105569]]	[[44089177, 44089465], [44092805, 44092865], [44094996, 44095067], [44096161, 44096231], [44097075, 44097142], [44098828, 44098926], [44099394, 44099472], [44100233, 44100334], [44101080, 44101170], [44102569, 44102615], [44102728, 44102870], [44104718, 44104861], [44104973, 44105127], [44105244, 44105342]]
NM_032592	[[44087811, 44088251], [44089177, 44089465], [44092805, 44092865], [44094996, 44095067], [44096161, 44096231], [44097075, 44097142], [44098828, 44098926], [44099394, 44099472], [44100233, 44100334], [44101080, 44101170], [44102569, 44102615], [44102728, 44102870], [44104718, 44104861], [44104973, 44105127], [44105244, 44105569]]	[[44089177, 44089465], [44092805, 44092865], [44094996, 44095067], [44096161, 44096231], [44097075, 44097142], [44098828, 44098926], [44099394, 44099472], [44100233, 44100334], [44101080, 44101170], [44102569, 44102615], [44102728, 44102870], [44104718, 44104861], [44104973, 44105127], [44105244, 44105342]]

Promoter

Chrom	Start	End	Description
chr11	44087803	44087827	CAGE_peak_3_at_ACCS_5end
chr11	44087842	44087859	CAGE_peak_5_at_ACCS_5end
chr11	44087862	44087904	CAGE_peak_2_at_ACCS_5end
chr11	44088002	44088026	CAGE_peak_4_at_ACCS_5end
chr11	44088027	44088086	CAGE_peak_1_at_ACCS_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr11	GH11I044065	44065295	44067520	2.03	[{'connected_gene': 'ACCS', 'score': 625.6}, {'connected_gene': 'EXT2', 'score': 21.13}, {'connected_gene': 'SEC14L1P1', 'score': 11.64}, {'connected_gene': 'ALKBH3', 'score': 10.54}, {'connected_gene': 'TTC17', 'score': 10.27}, {'connected_gene': 'ALKBH3-AS1', 'score': 10.01}, {'connected_gene': 'C11orf96', 'score': 10.01}, {'connected_gene': 'ENSG00000255165', 'score': 0.44}, {'connected_gene': 'GC11P043987', 'score': 0.18}]
chr11	GH11I044029	44029147	44033906	0.92	[{'connected_gene': 'ACCS', 'score': 23.0}, {'connected_gene': 'ENSG00000255165', 'score': 11.01}, {'connected_gene': 'ENSG00000244953', 'score': 6.19}, {'connected_gene': 'EXT2', 'score': 4.89}, {'connected_gene': 'GC11P043987', 'score': 0.26}, {'connected_gene': 'ACCSL', 'score': 0.14}]
chr11	GH11I044112	44112571	44112720	0.56	[{'connected_gene': 'ACCS', 'score': 33.68}, {'connected_gene': 'ENSG00000255165', 'score': 11.02}, {'connected_gene': 'EXT2', 'score': 0.37}, {'connected_gene': 'GC11P043987', 'score': 0.13}, {'connected_gene': 'GC11P044248', 'score': 0.12}]
chr11	GH11I044228	44228589	44230386	0.2	[{'connected_gene': 'ACCS', 'score': 11.48}, {'connected_gene': 'EXT2', 'score': 9.47}, {'connected_gene': 'GC11P044248', 'score': 0.37}]
chr11	GH11I043357	43357913	43360918	2.06	[{'connected_gene': 'TTC17', 'score': 564.54}, {'connected_gene': 'ENSG00000254907', 'score': 550.77}, {'connected_gene': 'SEC14L1P1', 'score': 11.57}, {'connected_gene': 'ALKBH3', 'score': 10.48}, {'connected_gene': 'ACCS', 'score': 10.11}, {'connected_gene': 'EXT2', 'score': 9.98}, {'connected_gene': 'API5', 'score': 6.46}, {'connected_gene': 'ENSG00000255340', 'score': 0.31}]
chr11	GH11I043941	43941116	43946058	2.13	[{'connected_gene': 'C11orf96', 'score': 550.37}, {'connected_gene': 'SEC14L1P1', 'score': 17.47}, {'connected_gene': 'ALKBH3', 'score': 14.45}, {'connected_gene': 'EXT2', 'score': 14.41}, {'connected_gene': 'ENSG00000254907', 'score': 14.19}, {'connected_gene': 'TTC17', 'score': 13.93}, {'connected_gene': 'ACCS', 'score': 13.88}, {'connected_gene': 'ALKBH3-AS1', 'score': 11.8}, {'connected_gene': 'ENSG00000254409', 'score': 11.8}, {'connected_gene': 'LOC105376644', 'score': 10.33}, {'connected_gene': 'ENSG00000244953', 'score': 6.29}, {'connected_gene': 'ACCSL', 'score': 0.34}]
chr11	GH11I044036	44036979	44037333	0.57	[{'connected_gene': 'C11orf96', 'score': 10.93}, {'connected_gene': 'ALKBH3-AS1', 'score': 10.92}, {'connected_gene': 'ACCS', 'score': 0.31}, {'connected_gene': 'GC11P043987', 'score': 0.25}, {'connected_gene': 'ACCSL', 'score': 0.13}]
chr11	GH11I044037	44037411	44037620	0.85	[{'connected_gene': 'C11orf96', 'score': 10.93}, {'connected_gene': 'ALKBH3-AS1', 'score': 10.92}, {'connected_gene': 'ACCS', 'score': 0.31}, {'connected_gene': 'GC11P043987', 'score': 0.23}, {'connected_gene': 'ACCSL', 'score': 0.13}]
chr11	GH11I044034	44034524	44035834	0.2	[{'connected_gene': 'C11orf96', 'score': 10.94}, {'connected_gene': 'ALKBH3-AS1', 'score': 10.93}, {'connected_gene': 'EXT2', 'score': 4.74}, {'connected_gene': 'ACCS', 'score': 0.29}, {'connected_gene': 'GC11P043987', 'score': 0.25}, {'connected_gene': 'ACCSL', 'score': 0.14}]
chr11	GH11I044268	44268377	44272214	1.55	[{'connected_gene': 'EXT2', 'score': 5.7}, {'connected_gene': 'ACCS', 'score': 4.65}, {'connected_gene': 'GC11M044275', 'score': 0.44}, {'connected_gene': 'GC11P044248', 'score': 0.34}, {'connected_gene': 'ALX4', 'score': 0.25}]
chr11	GH11I044095	44095051	44097178	1.91	[{'connected_gene': 'EXT2', 'score': 563.08}, {'connected_gene': 'ACCS', 'score': 29.41}, {'connected_gene': 'GC11P043987', 'score': 0.14}, {'connected_gene': 'GC11P044248', 'score': 0.1}]
chr11	GH11I044094	44094201	44094601	0.88	[{'connected_gene': 'EXT2', 'score': 555.34}, {'connected_gene': 'ACCS', 'score': 18.5}, {'connected_gene': 'GC11P044088', 'score': 0.44}, {'connected_gene': 'GC11P043987', 'score': 0.14}]
chr11	GH11I044144	44144031	44144200	0.66	[{'connected_gene': 'EXT2', 'score': 11.11}, {'connected_gene': 'ENSG00000255165', 'score': 10.94}, {'connected_gene': 'ACCS', 'score': 10.93}, {'connected_gene': 'GC11P044248', 'score': 0.15}]
chr11	GH11I044007	44007125	44007983	0.43	[{'connected_gene': 'ALKBH3-AS1', 'score': 10.81}, {'connected_gene': 'ENSG00000254409', 'score': 10.81}, {'connected_gene': 'ENSG00000244953', 'score': 4.94}, {'connected_gene': 'GC11P043987', 'score': 0.34}, {'connected_gene': 'ACCS', 'score': 0.22}, {'connected_gene': 'ACCSL', 'score': 0.17}]
chr11	GH11I043992	43992282	43993839	0.86	[{'connected_gene': 'ALKBH3-AS1', 'score': 11.46}, {'connected_gene': 'ENSG00000254409', 'score': 11.46}, {'connected_gene': 'GC11P043987', 'score': 0.44}, {'connected_gene': 'ACCS', 'score': 0.19}, {'connected_gene': 'ACCSL', 'score': 0.19}]
chr11	GH11I044013	44013732	44015895	0.43	[{'connected_gene': 'ALKBH3-AS1', 'score': 10.8}, {'connected_gene': 'ENSG00000254409', 'score': 10.8}, {'connected_gene': 'ACCS', 'score': 7.64}, {'connected_gene': 'EXT2', 'score': 5.3}, {'connected_gene': 'GC11P043987', 'score': 0.31}, {'connected_gene': 'ACCSL', 'score': 0.16}]
chr11	GH11I044018	44018035	44018541	0.31	[{'connected_gene': 'ENSG00000244953', 'score': 6.54}, {'connected_gene': 'GC11P043987', 'score': 0.29}, {'connected_gene': 'ACCS', 'score': 0.25}, {'connected_gene': 'ACCSL', 'score': 0.15}]
chr11	GH11I044006	44006158	44006435	0.2	[{'connected_gene': 'GC11P043987', 'score': 0.37}, {'connected_gene': 'ACCS', 'score': 0.22}, {'connected_gene': 'ACCSL', 'score': 0.17}]
chr11	GH11I044016	44016231	44016380	0.4	[{'connected_gene': 'GC11P043987', 'score': 0.31}, {'connected_gene': 'ACCS', 'score': 0.25}, {'connected_gene': 'ACCSL', 'score': 0.15}]
chr11	GH11I044005	44005311	44005460	0.63	[{'connected_gene': 'GC11P043987', 'score': 0.37}, {'connected_gene': 'ACCS', 'score': 0.21}, {'connected_gene': 'ACCSL', 'score': 0.18}]
chr11	GH11I044110	44110311	44110480	0.66	[{'connected_gene': 'ENSG00000255165', 'score': 11.44}, {'connected_gene': 'ACCS', 'score': 11.43}, {'connected_gene': 'EXT2', 'score': 0.39}, {'connected_gene': 'GC11P043987', 'score': 0.13}, {'connected_gene': 'GC11P044248', 'score': 0.12}]
chr11	GH11I044101	44101942	44101960	0.34	[{'connected_gene': 'ENSG00000255165', 'score': 11.13}, {'connected_gene': 'ACCS', 'score': 11.11}, {'connected_gene': 'EXT2', 'score': 0.44}, {'connected_gene': 'GC11P043987', 'score': 0.14}, {'connected_gene': 'GC11P044248', 'score': 0.11}]
chr11	GH11I044245	44245935	44247765	0.2	[{'connected_gene': 'GC11P044248', 'score': 550.77}, {'connected_gene': 'ACCS', 'score': 25.36}, {'connected_gene': 'EXT2', 'score': 5.19}]
chr11	GH11I043986	43986627	43990775	1.16	[{'connected_gene': 'GC11P043987', 'score': 550.77}, {'connected_gene': 'ENSG00000244953', 'score': 5.24}, {'connected_gene': 'ACCSL', 'score': 0.2}, {'connected_gene': 'ENSG00000254409', 'score': 0.2}, {'connected_gene': 'ACCS', 'score': 0.18}]
chr11	GH11I044010	44010845	44011088	0.45	[{'connected_gene': 'ENSG00000254409', 'score': 10.81}, {'connected_gene': 'ALKBH3-AS1', 'score': 10.8}, {'connected_gene': 'C11orf96', 'score': 1.47}, {'connected_gene': 'GC11P043987', 'score': 0.34}, {'connected_gene': 'ACCS', 'score': 0.23}, {'connected_gene': 'ACCSL', 'score': 0.17}]