PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000369825	[[105148797, 105148923], [105151947, 105152040], [105152127, 105152223], [105153955, 105154151], [105155502, 105155780]]	[[105151950, 105152040], [105152127, 105152214]]
ENST00000369811	[[105148806, 105148923], [105151947, 105152040], [105152127, 105152223], [105155502, 105155831]]	[[105151950, 105152040], [105152127, 105152214]]
ENST00000369815	[[105148806, 105148923], [105151947, 105152040], [105152127, 105152223], [105155502, 105155789], [105156165, 105156198]]	[[105151950, 105152040], [105152127, 105152214]]
ENST00000337003	[[105148806, 105148923], [105151947, 105152040], [105152127, 105152223], [105153955, 105154151], [105156165, 105156223]]	[[105151950, 105152040], [105152127, 105152214]]
ENST00000309579	[[105148806, 105148923], [105151947, 105152040], [105152127, 105152223], [105156165, 105156223]]	[[105151950, 105152040], [105152127, 105152214]]

Promoter

Chrom	Start	End	Description
chr10	105156198	105156248	CAGE_peak_1_at_USMG5_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr10	GH10I103771	103771403	103773437	1.57	[{'connected_gene': 'ATP5MD', 'score': 4.91}, {'connected_gene': 'GSTO2', 'score': 4.4}, {'connected_gene': 'SH3PXD2A-AS1', 'score': 0.31}, {'connected_gene': 'SH3PXD2A', 'score': 0.18}]
chr10	GH10I103395	103394288	103394347	1.01	[{'connected_gene': 'ATP5MD', 'score': 550.77}, {'connected_gene': 'MIR1307', 'score': 550.77}, {'connected_gene': 'CALHM2', 'score': 11.47}, {'connected_gene': 'GC10P103388', 'score': 0.44}]
chr10	GH10I103349	103349963	103351835	1.98	[{'connected_gene': 'PCGF6', 'score': 561.14}, {'connected_gene': 'PDCD11', 'score': 24.51}, {'connected_gene': 'ENSG00000260461', 'score': 20.94}, {'connected_gene': 'SLK', 'score': 12.1}, {'connected_gene': 'MIR1307', 'score': 11.49}, {'connected_gene': 'ATP5MD', 'score': 11.47}, {'connected_gene': 'RNU11-3P', 'score': 10.74}, {'connected_gene': 'NEURL1-AS1', 'score': 9.94}, {'connected_gene': 'CALHM2', 'score': 6.56}, {'connected_gene': 'GC10M103313', 'score': 0.28}]
chr10	GH10I103244	103244601	103244933	0.96	[{'connected_gene': 'RPEL1', 'score': 550.77}, {'connected_gene': 'INA', 'score': 11.64}, {'connected_gene': 'RNU11-3P', 'score': 11.05}, {'connected_gene': 'CNNM2', 'score': 11.03}, {'connected_gene': 'CYP17A1', 'score': 10.09}, {'connected_gene': 'MIR1307', 'score': 9.88}, {'connected_gene': 'ATP5MD', 'score': 9.87}, {'connected_gene': 'PDCD11', 'score': 9.87}, {'connected_gene': 'AS3MT', 'score': 9.7}, {'connected_gene': 'PTGES3P4', 'score': 9.69}, {'connected_gene': 'PFN1P11', 'score': 9.69}, {'connected_gene': 'ST13P13', 'score': 0.31}]
chr10	GH10I103245	103245935	103245994	0.5	[{'connected_gene': 'RPEL1', 'score': 550.77}, {'connected_gene': 'INA', 'score': 11.64}, {'connected_gene': 'RNU11-3P', 'score': 11.05}, {'connected_gene': 'CNNM2', 'score': 11.03}, {'connected_gene': 'CYP17A1', 'score': 10.09}, {'connected_gene': 'MIR1307', 'score': 9.88}, {'connected_gene': 'ATP5MD', 'score': 9.87}, {'connected_gene': 'PDCD11', 'score': 9.87}, {'connected_gene': 'AS3MT', 'score': 9.7}, {'connected_gene': 'PTGES3P4', 'score': 9.69}, {'connected_gene': 'PFN1P11', 'score': 9.69}]
chr10	GH10I103246	103246002	103246199	0.2	[{'connected_gene': 'RPEL1', 'score': 550.77}, {'connected_gene': 'INA', 'score': 11.64}, {'connected_gene': 'RNU11-3P', 'score': 11.05}, {'connected_gene': 'CNNM2', 'score': 11.03}, {'connected_gene': 'CYP17A1', 'score': 10.09}, {'connected_gene': 'MIR1307', 'score': 9.88}, {'connected_gene': 'ATP5MD', 'score': 9.87}, {'connected_gene': 'PDCD11', 'score': 9.87}, {'connected_gene': 'AS3MT', 'score': 9.7}, {'connected_gene': 'PTGES3P4', 'score': 9.69}, {'connected_gene': 'PFN1P11', 'score': 9.69}]
chr10	GH10I103434	103434236	103434431	0.31	[{'connected_gene': 'CALHM1', 'score': 12.43}, {'connected_gene': 'NEURL1', 'score': 11.2}, {'connected_gene': 'ATP5MD', 'score': 10.38}, {'connected_gene': 'PDCD11', 'score': 10.38}, {'connected_gene': 'MIR1307', 'score': 10.38}, {'connected_gene': 'NEURL1-AS1', 'score': 10.33}, {'connected_gene': 'CALHM2', 'score': 10.24}, {'connected_gene': 'ENSG00000273485', 'score': 0.37}, {'connected_gene': 'GC10M103406', 'score': 0.31}]
chr10	GH10I103432	103432128	103432481	0.43	[{'connected_gene': 'CALHM1', 'score': 12.15}, {'connected_gene': 'NEURL1', 'score': 11.59}, {'connected_gene': 'ATP5MD', 'score': 11.06}, {'connected_gene': 'PDCD11', 'score': 11.06}, {'connected_gene': 'MIR1307', 'score': 11.06}, {'connected_gene': 'NEURL1-AS1', 'score': 10.67}, {'connected_gene': 'RNU11-3P', 'score': 9.68}, {'connected_gene': 'ENSG00000273485', 'score': 0.37}, {'connected_gene': 'GC10M103406', 'score': 0.31}]
chr10	GH10I103433	103433984	103434133	0.2	[{'connected_gene': 'CALHM1', 'score': 12.54}, {'connected_gene': 'NEURL1', 'score': 11.48}, {'connected_gene': 'ATP5MD', 'score': 11.04}, {'connected_gene': 'PDCD11', 'score': 11.04}, {'connected_gene': 'MIR1307', 'score': 11.04}, {'connected_gene': 'NEURL1-AS1', 'score': 10.33}, {'connected_gene': 'RNU11-3P', 'score': 9.72}, {'connected_gene': 'ENSG00000273485', 'score': 0.37}, {'connected_gene': 'GC10M103406', 'score': 0.31}]
chr10	GH10I103394	103394884	103398147	2.03	[{'connected_gene': 'PDCD11', 'score': 581.49}, {'connected_gene': 'ATP5MD', 'score': 550.77}, {'connected_gene': 'TAF5', 'score': 17.11}, {'connected_gene': 'PCGF6', 'score': 14.47}, {'connected_gene': 'CALHM2', 'score': 7.1}, {'connected_gene': 'AS3MT', 'score': 4.62}]
chr10	GH10I103398	103398367	103398426	0.5	[{'connected_gene': 'PDCD11', 'score': 550.77}, {'connected_gene': 'ATP5MD', 'score': 550.77}, {'connected_gene': 'GC10M103406', 'score': 0.44}]
chr10	GH10I103416	103416744	103416893	0.38	[{'connected_gene': 'ENSG00000234699', 'score': 12.07}, {'connected_gene': 'CALHM2', 'score': 12.07}, {'connected_gene': 'NEURL1', 'score': 11.9}, {'connected_gene': 'ATP5MD', 'score': 11.75}, {'connected_gene': 'PDCD11', 'score': 11.75}, {'connected_gene': 'MIR1307', 'score': 11.75}, {'connected_gene': 'CALHM1', 'score': 11.5}, {'connected_gene': 'NEURL1-AS1', 'score': 11.01}, {'connected_gene': 'GC10M103406', 'score': 0.44}, {'connected_gene': 'ENSG00000273485', 'score': 0.29}]
chr10	GH10I103417	103416924	103417113	0.54	[{'connected_gene': 'ENSG00000234699', 'score': 12.07}, {'connected_gene': 'CALHM2', 'score': 12.07}, {'connected_gene': 'NEURL1', 'score': 11.9}, {'connected_gene': 'ATP5MD', 'score': 11.75}, {'connected_gene': 'PDCD11', 'score': 11.75}, {'connected_gene': 'MIR1307', 'score': 11.75}, {'connected_gene': 'CALHM1', 'score': 11.5}, {'connected_gene': 'NEURL1-AS1', 'score': 11.01}, {'connected_gene': 'GC10M103406', 'score': 0.39}, {'connected_gene': 'ENSG00000273485', 'score': 0.29}]