PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000273352	[[100328432, 100328815], [100348441, 100348555], [100349548, 100349653], [100352108, 100352221], [100354520, 100354670], [100356145, 100356246], [100362109, 100362249], [100362369, 100362477], [100364788, 100364952], [100365412, 100365568], [100368538, 100368651], [100373678, 100374025], [100374742, 100374839], [100378531, 100378687], [100387792, 100387949], [100413587, 100414323]]	[[100328700, 100328815], [100348441, 100348555], [100349548, 100349653], [100352108, 100352221], [100354520, 100354670], [100356145, 100356246], [100362109, 100362249], [100362369, 100362477], [100364788, 100364952], [100365412, 100365568], [100368538, 100368651], [100373678, 100374025], [100374742, 100374839], [100378531, 100378687], [100387792, 100387949], [100413587, 100413845]]
ENST00000475887	[[100354441, 100354670], [100356145, 100356246], [100364788, 100364952], [100365412, 100365568], [100368538, 100368651], [100373678, 100374025], [100374742, 100374839], [100378531, 100378687], [100387792, 100387949], [100413587, 100414102]]	[[100356185, 100356246], [100364788, 100364952], [100365412, 100365568], [100368538, 100368651], [100373678, 100374025], [100374742, 100374839], [100378531, 100378687], [100387792, 100387949], [100413587, 100413845]]
ENST00000481506	[[100373039, 100374025], [100374742, 100374839], [100378531, 100378687], [100387792, 100387949], [100413587, 100414182]]	None
ENST00000481361	[[100354381, 100354670], [100356145, 100356246], [100362109, 100362249], [100362369, 100362452]]	None
ENST00000493081	[[100354383, 100354670], [100356145, 100356419]]	None
NM_032787	[[100328432, 100328815], [100348441, 100348555], [100349548, 100349653], [100352108, 100352221], [100354520, 100354670], [100356145, 100356246], [100362109, 100362249], [100362369, 100362477], [100364788, 100364952], [100365412, 100365568], [100368538, 100368651], [100373678, 100374025], [100374742, 100374839], [100378531, 100378687], [100387792, 100387949], [100413587, 100414323]]	[[100328700, 100328815], [100348441, 100348555], [100349548, 100349653], [100352108, 100352221], [100354520, 100354670], [100356145, 100356246], [100362109, 100362249], [100362369, 100362477], [100364788, 100364952], [100365412, 100365568], [100368538, 100368651], [100373678, 100374025], [100374742, 100374839], [100378531, 100378687], [100387792, 100387949], [100413587, 100413845]]
NM_001308362	[[100354381, 100354670], [100356145, 100356246], [100364788, 100364952], [100365412, 100365568], [100368538, 100368651], [100373678, 100374025], [100374742, 100374839], [100378531, 100378687], [100387792, 100387949], [100413587, 100414323]]	[[100356185, 100356246], [100364788, 100364952], [100365412, 100365568], [100368538, 100368651], [100373678, 100374025], [100374742, 100374839], [100378531, 100378687], [100387792, 100387949], [100413587, 100413845]]

Promoter

Chrom	Start	End	Description
chr3	100328439	100328459	CAGE_peak_1_at_GPR128_5end
chr3	100328486	100328495	CAGE_peak_4_at_GPR128_5end
chr3	100354446	100354464	CAGE_peak_3_at_GPR128_5end
chr3	100354532	100354545	CAGE_peak_2_at_GPR128_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I100608	100608852	100616052	1.47	[{'connected_gene': 'ADGRG7', 'score': 550.77}, {'connected_gene': 'TFG', 'score': 16.39}, {'connected_gene': 'ENSG00000252989', 'score': 11.27}, {'connected_gene': 'TOMM70', 'score': 5.81}, {'connected_gene': 'TMEM45A', 'score': 5.01}, {'connected_gene': 'LNP1', 'score': 4.8}, {'connected_gene': 'GC03M100588', 'score': 0.37}]
chr3	GH03I100639	100639888	100642774	1.21	[{'connected_gene': 'TFG', 'score': 15.53}, {'connected_gene': 'ADGRG7', 'score': 11.19}, {'connected_gene': 'TMEM45A', 'score': 5.61}, {'connected_gene': 'LNP1', 'score': 4.07}, {'connected_gene': 'ENSG00000252989', 'score': 0.77}, {'connected_gene': 'GC03M100588', 'score': 0.39}]
chr3	GH03I100599	100599715	100601560	0.76	[{'connected_gene': 'TFG', 'score': 18.31}, {'connected_gene': 'TMEM45A', 'score': 6.36}, {'connected_gene': 'ADGRG7', 'score': 0.44}, {'connected_gene': 'GC03P100589', 'score': 0.39}, {'connected_gene': 'GC03M100588', 'score': 0.31}]
chr3	GH03I100602	100602130	100604042	1.26	[{'connected_gene': 'TFG', 'score': 18.18}, {'connected_gene': 'TMEM45A', 'score': 6.6}, {'connected_gene': 'ADGRG7', 'score': 0.44}, {'connected_gene': 'GC03P100589', 'score': 0.39}, {'connected_gene': 'GC03M100588', 'score': 0.31}]
chr3	GH03I100634	100634595	100637404	1.29	[{'connected_gene': 'TFG', 'score': 7.61}, {'connected_gene': 'TMEM45A', 'score': 5.89}, {'connected_gene': 'LNP1', 'score': 4.29}, {'connected_gene': 'GC03M100588', 'score': 0.44}, {'connected_gene': 'ENSG00000252989', 'score': 0.39}, {'connected_gene': 'ADGRG7', 'score': 0.31}]
chr3	GH03I100591	100591089	100592181	0.69	[{'connected_gene': 'TFG', 'score': 18.35}, {'connected_gene': 'LNP1', 'score': 10.96}, {'connected_gene': 'TOMM70', 'score': 10.96}, {'connected_gene': 'TMEM45A', 'score': 7.45}, {'connected_gene': 'GC03P100589', 'score': 0.77}, {'connected_gene': 'ADGRG7', 'score': 0.37}, {'connected_gene': 'GC03M100588', 'score': 0.28}]
chr3	GH03I100681	100681008	100683899	0.59	[{'connected_gene': 'TFG', 'score': 18.31}, {'connected_gene': 'ENSG00000252989', 'score': 11.58}, {'connected_gene': 'LNP1', 'score': 9.32}, {'connected_gene': 'TMEM45A', 'score': 4.58}, {'connected_gene': 'GMFBP1', 'score': 0.37}, {'connected_gene': 'ADGRG7', 'score': 0.19}]
chr3	GH03I100650	100650561	100651655	0.95	[{'connected_gene': 'TFG', 'score': 18.07}, {'connected_gene': 'ENSG00000252989', 'score': 0.77}, {'connected_gene': 'GMFBP1', 'score': 0.39}, {'connected_gene': 'ADGRG7', 'score': 0.26}]
chr3	GH03I100665	100665201	100665400	0.38	[{'connected_gene': 'GMFBP1', 'score': 550.77}, {'connected_gene': 'TFG', 'score': 12.03}, {'connected_gene': 'ADGRG7', 'score': 10.98}, {'connected_gene': 'ENSG00000252989', 'score': 0.37}]
chr3	GH03I100590	100590401	100590959	1.11	[{'connected_gene': 'GC03P100589', 'score': 550.77}, {'connected_gene': 'LNP1', 'score': 10.34}, {'connected_gene': 'TOMM70', 'score': 10.34}, {'connected_gene': 'TMEM45A', 'score': 7.45}, {'connected_gene': 'ADGRG7', 'score': 0.37}, {'connected_gene': 'GC03M100588', 'score': 0.28}]
chr3	GH03I100628	100628957	100630628	0.96	[{'connected_gene': 'GC03M100588', 'score': 550.77}, {'connected_gene': 'TFG', 'score': 17.2}, {'connected_gene': 'ADGRG7', 'score': 13.22}, {'connected_gene': 'ENSG00000252989', 'score': 0.37}]
chr3	GH03I100696	100696437	100699565	0.71	[{'connected_gene': 'ENSG00000252989', 'score': 10.27}, {'connected_gene': 'TFG', 'score': 8.44}, {'connected_gene': 'LNP1', 'score': 8.31}, {'connected_gene': 'ADGRG7', 'score': 8.13}, {'connected_gene': 'GMFBP1', 'score': 0.29}]