PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000441964	[[43120723, 43123028], [43131979, 43132101], [43147327, 43147431]]	[[43121180, 43122923]]
ENST00000344697	[[43120725, 43123028], [43147327, 43147568]]	[[43121180, 43122923]]
NM_032806	[[43120720, 43123028], [43147327, 43147575]]	[[43121180, 43122923]]

Promoter

Chrom	Start	End	Description
chr3	43147498	43147546	CAGE_peak_2_at_C3orf39_5end
chr3	43147549	43147590	CAGE_peak_1_at_C3orf39_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I043011	43011405	43025933	1.07	[{'connected_gene': 'POMGNT2', 'score': 16.77}, {'connected_gene': 'FAM198A', 'score': 5.24}, {'connected_gene': 'HIGD1A', 'score': 4.45}, {'connected_gene': 'PIR62180', 'score': 0.39}, {'connected_gene': 'PIR49761', 'score': 0.31}, {'connected_gene': 'ENSG00000273291', 'score': 0.08}]
chr3	GH03I043027	43027884	43029517	0.63	[{'connected_gene': 'POMGNT2', 'score': 15.73}, {'connected_gene': 'FAM198A', 'score': 7.17}, {'connected_gene': 'PIR62180', 'score': 0.77}, {'connected_gene': 'PIR49761', 'score': 0.28}, {'connected_gene': 'ENSG00000273291', 'score': 0.08}]
chr3	GH03I043105	43105089	43106678	1.95	[{'connected_gene': 'POMGNT2', 'score': 563.48}, {'connected_gene': 'NKTR', 'score': 13.23}, {'connected_gene': 'HIGD1A', 'score': 5.03}, {'connected_gene': 'ENSG00000271941', 'score': 4.39}, {'connected_gene': 'ENSG00000227245', 'score': 0.37}]
chr3	GH03I043162	43162075	43164331	0.83	[{'connected_gene': 'POMGNT2', 'score': 10.72}, {'connected_gene': 'CCDC13', 'score': 4.27}, {'connected_gene': 'LOC105377051', 'score': 0.39}, {'connected_gene': 'GC03P043189', 'score': 0.31}, {'connected_gene': 'GC03P043127', 'score': 0.28}]
chr3	GH03I043155	43155036	43155732	0.62	[{'connected_gene': 'POMGNT2', 'score': 15.4}, {'connected_gene': 'LOC105377051', 'score': 0.77}, {'connected_gene': 'GC03P043127', 'score': 0.31}, {'connected_gene': 'GC03P043189', 'score': 0.29}]
chr3	GH03I043133	43133269	43133418	0.46	[{'connected_gene': 'POMGNT2', 'score': 11.43}, {'connected_gene': 'GC03P043127', 'score': 0.44}, {'connected_gene': 'LOC105377051', 'score': 0.37}]
chr3	GH03I042999	42999263	43002609	1.2	[{'connected_gene': 'FAM198A', 'score': 18.56}, {'connected_gene': 'POMGNT2', 'score': 9.89}, {'connected_gene': 'PIR49761', 'score': 0.44}, {'connected_gene': 'PIR62180', 'score': 0.29}, {'connected_gene': 'ENSG00000273291', 'score': 0.08}]
chr3	GH03I042134	42134704	42136515	0.89	[{'connected_gene': 'NKTR', 'score': 21.93}, {'connected_gene': 'ZNF662', 'score': 11.16}, {'connected_gene': 'SEC22C', 'score': 10.61}, {'connected_gene': 'POMGNT2', 'score': 10.54}, {'connected_gene': 'ULK4', 'score': 10.14}, {'connected_gene': 'CTNNB1', 'score': 9.73}, {'connected_gene': 'TRAK1', 'score': 4.59}, {'connected_gene': 'GC03M042146', 'score': 0.39}, {'connected_gene': 'GC03P042123', 'score': 0.39}]
chr3	GH03I042741	42741670	42743390	0.59	[{'connected_gene': 'NKTR', 'score': 21.99}, {'connected_gene': 'ZNF662', 'score': 19.77}, {'connected_gene': 'CCDC13-AS1', 'score': 15.1}, {'connected_gene': 'LINC02158', 'score': 11.08}, {'connected_gene': 'CCDC13', 'score': 11.06}, {'connected_gene': 'KRBOX1', 'score': 10.86}, {'connected_gene': 'SEC22C', 'score': 10.68}, {'connected_gene': 'POMGNT2', 'score': 10.57}, {'connected_gene': 'SNRK-AS1', 'score': 10.29}]
chr3	GH03I042880	42880401	42881678	1.45	[{'connected_gene': 'NKTR', 'score': 18.34}, {'connected_gene': 'HIGD1A', 'score': 15.01}, {'connected_gene': 'SNRK-AS1', 'score': 13.2}, {'connected_gene': 'ENSG00000235288', 'score': 12.11}, {'connected_gene': 'ACKR2', 'score': 11.98}, {'connected_gene': 'ZNF662', 'score': 11.23}, {'connected_gene': 'CCDC13', 'score': 10.81}, {'connected_gene': 'LINC02158', 'score': 10.8}, {'connected_gene': 'KRBOX1', 'score': 10.68}, {'connected_gene': 'CYP8B1', 'score': 7.29}, {'connected_gene': 'POMGNT2', 'score': 1.24}, {'connected_gene': 'HNRNPA1P22', 'score': 0.44}, {'connected_gene': 'ENSG00000273328', 'score': 0.19}, {'connected_gene': 'ENSG00000273291', 'score': 0.19}]
chr3	GH03I043151	43151912	43154921	0.62	[{'connected_gene': 'LOC105377051', 'score': 550.77}, {'connected_gene': 'POMGNT2', 'score': 11.03}, {'connected_gene': 'FAM198A', 'score': 6.43}, {'connected_gene': 'NKTR', 'score': 4.85}, {'connected_gene': 'GC03P043127', 'score': 0.31}, {'connected_gene': 'GC03P043189', 'score': 0.28}]
chr3	GH03I042759	42759845	42763399	1.18	[{'connected_gene': 'CCDC13-AS1', 'score': 34.62}, {'connected_gene': 'KRBOX1', 'score': 10.91}, {'connected_gene': 'SEC22C', 'score': 10.67}, {'connected_gene': 'POMGNT2', 'score': 10.57}, {'connected_gene': 'ZNF662', 'score': 10.35}, {'connected_gene': 'HIGD1A', 'score': 9.46}, {'connected_gene': 'LINC02158', 'score': 0.44}, {'connected_gene': 'CCDC13', 'score': 0.39}, {'connected_gene': 'ENSG00000280571', 'score': 0.26}]
chr3	GH03I042819	42819334	42820618	1.19	[{'connected_gene': 'KRBOX1', 'score': 11.17}, {'connected_gene': 'SEC22C', 'score': 10.65}, {'connected_gene': 'POMGNT2', 'score': 10.58}, {'connected_gene': 'NKTR', 'score': 4.05}, {'connected_gene': 'ENSG00000273328', 'score': 0.39}, {'connected_gene': 'ENSG00000273291', 'score': 0.39}, {'connected_gene': 'ACKR2', 'score': 0.37}, {'connected_gene': 'ENSG00000235288', 'score': 0.29}]
chr3	GH03I043036	43036728	43037398	0.69	[{'connected_gene': 'ENSG00000232375', 'score': 550.77}, {'connected_gene': 'FAM198A', 'score': 17.85}, {'connected_gene': 'POMGNT2', 'score': 4.75}, {'connected_gene': 'PIR62180', 'score': 0.77}, {'connected_gene': 'ENSG00000273291', 'score': 0.07}]