PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000308448	[[89511268, 89514564], [89516545, 89516679], [89527429, 89527480], [89530708, 89530798], [89536077, 89536184], [89544226, 89544427], [89550066, 89550187], [89552413, 89552512], [89574194, 89574369], [89577551, 89577917]]	[[89514443, 89514564], [89516545, 89516679], [89527429, 89527480], [89530708, 89530798], [89536077, 89536184], [89544226, 89544427], [89550066, 89550187], [89552413, 89552512], [89574194, 89574356]]
ENST00000328142	[[89512873, 89514564], [89516545, 89516679], [89527429, 89527480], [89530708, 89530798], [89536077, 89536184], [89544226, 89544427], [89550066, 89550187], [89552413, 89552512], [89574194, 89574639]]	[[89514443, 89514564], [89516545, 89516679], [89527429, 89527480], [89530708, 89530798], [89536077, 89536184], [89544226, 89544427], [89550066, 89550187], [89552413, 89552512], [89574194, 89574356]]
ENST00000400215	[[89514002, 89514564], [89516545, 89516679], [89527429, 89527480], [89536077, 89536184], [89544226, 89544427], [89550066, 89550187], [89552413, 89552514]]	[[89514443, 89514564], [89516545, 89516679], [89527429, 89527480], [89536077, 89536184], [89544226, 89544427], [89550066, 89550187], [89552413, 89552500]]
ENST00000541004	[[89519511, 89519544], [89527429, 89527480], [89530708, 89530798], [89536077, 89536184], [89544226, 89544427], [89550066, 89550187], [89552413, 89552512], [89574194, 89574369], [89577551, 89577917]]	[[89519511, 89519544], [89527429, 89527480], [89530708, 89530798], [89536077, 89536184], [89544226, 89544427], [89550066, 89550187], [89552413, 89552512], [89574194, 89574356]]
ENST00000495903	[[89544308, 89544427], [89550066, 89550187], [89552413, 89552512], [89574194, 89574369], [89600943, 89601100]]	None
NM_032810	[[89511268, 89514564], [89516545, 89516679], [89527429, 89527480], [89530708, 89530798], [89536077, 89536184], [89544226, 89544427], [89550066, 89550187], [89552413, 89552512], [89574194, 89574369], [89577551, 89577988]]	[[89514443, 89514564], [89516545, 89516679], [89527429, 89527480], [89530708, 89530798], [89536077, 89536184], [89544226, 89544427], [89550066, 89550187], [89552413, 89552512], [89574194, 89574356]]
NM_001321969	[[89511268, 89514564], [89516545, 89516679], [89527429, 89527480], [89530708, 89530798], [89536077, 89536184], [89544226, 89544427], [89548796, 89548886], [89550066, 89550187], [89552413, 89552512], [89574194, 89574369], [89577923, 89577988]]	[[89514443, 89514564], [89516545, 89516679], [89527429, 89527480], [89530708, 89530798], [89536077, 89536184], [89544226, 89544427], [89548796, 89548821]]
NR_135914	[[89511268, 89514564], [89516545, 89516679], [89519457, 89519544], [89527429, 89527480], [89530708, 89530798], [89536077, 89536184], [89544226, 89544427], [89550066, 89550187], [89552413, 89552512], [89574194, 89574369], [89577923, 89577988]]	None
NM_001321967	[[89511268, 89514564], [89516545, 89516679], [89527429, 89527480], [89530708, 89530798], [89536077, 89536184], [89544226, 89544427], [89550066, 89550187], [89552413, 89552512], [89574194, 89574369], [89577923, 89577988]]	[[89514443, 89514564], [89516545, 89516679], [89527429, 89527480], [89530708, 89530798], [89536077, 89536184], [89544226, 89544427], [89550066, 89550187], [89552413, 89552512], [89574194, 89574356]]
NM_001321968	[[89511268, 89514564], [89516545, 89516679], [89527429, 89527480], [89536077, 89536184], [89544226, 89544427], [89550066, 89550187], [89552413, 89552512], [89574194, 89574369], [89577923, 89577988]]	[[89514443, 89514564], [89516545, 89516679], [89527429, 89527480], [89536077, 89536184], [89544226, 89544427], [89550066, 89550187], [89552413, 89552512], [89574194, 89574356]]

Promoter

Chrom	Start	End	Description
chr10	89577589	89577596	CAGE_peak_7_at_ATAD1_5end
chr10	89577636	89577647	CAGE_peak_9_at_ATAD1_5end
chr10	89577654	89577665	CAGE_peak_6_at_ATAD1_5end
chr10	89577732	89577739	CAGE_peak_13_at_ATAD1_5end
chr10	89577755	89577776	CAGE_peak_2_at_ATAD1_5end
chr10	89577778	89577785	CAGE_peak_3_at_ATAD1_5end
chr10	89577910	89578010	CAGE_peak_1_at_ATAD1_5end
chr10	89601072	89601077	CAGE_peak_14_at_ATAD1_5end
chr10	89601079	89601089	CAGE_peak_11_at_ATAD1_5end
chr10	89601094	89601122	CAGE_peak_5_at_ATAD1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr10	GH10I087734	87734384	87735733	0.89	[{'connected_gene': 'PAPSS2', 'score': 12.6}, {'connected_gene': 'ENSG00000196566', 'score': 12.6}, {'connected_gene': 'ATAD1', 'score': 7.22}, {'connected_gene': 'RPL11P3', 'score': 5.95}, {'connected_gene': 'PIR53011', 'score': 0.77}, {'connected_gene': 'GC10P087721', 'score': 0.39}, {'connected_gene': 'GC10M087750', 'score': 0.37}]
chr10	GH10I087740	87740200	87741000	1.19	[{'connected_gene': 'PAPSS2', 'score': 11.75}, {'connected_gene': 'ENSG00000196566', 'score': 11.75}, {'connected_gene': 'ATAD1', 'score': 6.56}, {'connected_gene': 'PIR53011', 'score': 0.44}, {'connected_gene': 'GC10M087750', 'score': 0.39}]
chr10	GH10I087742	87742643	87743920	0.81	[{'connected_gene': 'ATAD1', 'score': 6.87}, {'connected_gene': 'GC10M087750', 'score': 0.44}, {'connected_gene': 'PIR53011', 'score': 0.39}, {'connected_gene': 'PAPSS2', 'score': 0.18}]
chr10	GH10I087746	87746681	87747562	0.31	[{'connected_gene': 'ATAD1', 'score': 6.85}, {'connected_gene': 'GC10M087750', 'score': 0.44}, {'connected_gene': 'PIR53011', 'score': 0.37}, {'connected_gene': 'PAPSS2', 'score': 0.17}]
chr10	GH10I087815	87815128	87819527	2.25	[{'connected_gene': 'ATAD1', 'score': 567.87}, {'connected_gene': 'GC10M087815', 'score': 550.77}, {'connected_gene': 'GC10P087816', 'score': 550.77}, {'connected_gene': 'CFL1P1', 'score': 550.77}]
chr10	GH10I087759	87759758	87761364	0.86	[{'connected_gene': 'ATAD1', 'score': 7.11}, {'connected_gene': 'GC10M087750', 'score': 0.44}, {'connected_gene': 'GC10P087816', 'score': 0.22}]
chr10	GH10I087761	87761656	87762201	1.1	[{'connected_gene': 'ATAD1', 'score': 6.75}, {'connected_gene': 'GC10M087750', 'score': 0.44}, {'connected_gene': 'GC10P087816', 'score': 0.23}]
chr10	GH10I087748	87748715	87749078	0.33	[{'connected_gene': 'ATAD1', 'score': 6.39}, {'connected_gene': 'ENSG00000272631', 'score': 4.51}, {'connected_gene': 'GC10M087750', 'score': 0.77}, {'connected_gene': 'PIR53011', 'score': 0.37}]
chr10	GH10I087750	87750064	87750773	0.46	[{'connected_gene': 'ATAD1', 'score': 6.56}, {'connected_gene': 'GC10M087750', 'score': 0.77}, {'connected_gene': 'PIR53011', 'score': 0.37}]
chr10	GH10I087775	87775429	87776778	0.69	[{'connected_gene': 'GC10M087750', 'score': 0.34}, {'connected_gene': 'GC10P087816', 'score': 0.28}, {'connected_gene': 'ATAD1', 'score': 0.2}]
chr10	GH10I087840	87840480	87847323	1.47	[{'connected_gene': 'GC10P087843', 'score': 550.77}, {'connected_gene': 'FAM35A', 'score': 21.82}, {'connected_gene': 'NUTM2A-AS1', 'score': 21.8}, {'connected_gene': 'RPL11P3', 'score': 21.31}, {'connected_gene': 'NUTM2A', 'score': 10.47}, {'connected_gene': 'ENSG00000261011', 'score': 9.93}, {'connected_gene': 'ENSG00000224745', 'score': 5.06}, {'connected_gene': 'LIPJ', 'score': 4.4}, {'connected_gene': 'GC10P087845', 'score': 0.77}, {'connected_gene': 'ATAD1', 'score': 0.77}, {'connected_gene': 'CFL1P1', 'score': 0.31}]
chr10	GH10I087585	87585074	87587686	0.98	[{'connected_gene': 'ENSG00000272631', 'score': 59.44}, {'connected_gene': 'CFL1P1', 'score': 31.99}, {'connected_gene': 'NUTM2A', 'score': 22.87}, {'connected_gene': 'LINC00863', 'score': 21.87}, {'connected_gene': 'FAM35A', 'score': 21.82}, {'connected_gene': 'ATAD1', 'score': 12.99}, {'connected_gene': 'BMPR1A', 'score': 10.98}, {'connected_gene': 'BMS1P3', 'score': 10.3}, {'connected_gene': 'NUTM2A-AS1', 'score': 9.75}, {'connected_gene': 'GC10P087578', 'score': 0.44}, {'connected_gene': 'LOC105378412', 'score': 0.39}]