PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000239367	[[150139933, 150141839], [150147399, 150147495], [150157220, 150157433], [150158473, 150158599], [150164118, 150164260], [150174138, 150174296], [150184543, 150185162]]	[[150141684, 150141839], [150147399, 150147495], [150157220, 150157433], [150158473, 150158599], [150164118, 150164260], [150174138, 150174296], [150184543, 150185156]]
ENST00000546019	[[150141075, 150141839], [150147399, 150147495], [150157220, 150157433], [150158473, 150158599], [150164118, 150164260], [150174138, 150174296], [150186020, 150186199]]	[[150141684, 150141839], [150147399, 150147495], [150157220, 150157433], [150158473, 150158599], [150164118, 150164260], [150174138, 150174144]]
ENST00000463728	[[150147246, 150147495], [150157220, 150157335]]	None
ENST00000367368	[[150163689, 150163812], [150164118, 150164260], [150174138, 150174296], [150184543, 150185162]]	[[150163747, 150163812], [150164118, 150164260], [150174138, 150174296], [150184543, 150185156]]
NM_032832	[[150139893, 150141839], [150147399, 150147495], [150157220, 150157433], [150158473, 150158599], [150164118, 150164260], [150174138, 150174296], [150184543, 150185480]]	[[150141684, 150141839], [150147399, 150147495], [150157220, 150157433], [150158473, 150158599], [150164118, 150164260], [150174138, 150174296], [150184543, 150185156]]

Promoter

Chrom	Start	End	Description
chr6	150174198	150174216	CAGE_peak_7_at_LRP11_5end
chr6	150185063	150185092	CAGE_peak_3_at_LRP11_5end
chr6	150185105	150185119	CAGE_peak_5_at_LRP11_5end
chr6	150185156	150185200	CAGE_peak_2_at_LRP11_5end
chr6	150185435	150185501	CAGE_peak_1_at_LRP11_5end
chr6	150185504	150185513	CAGE_peak_4_at_LRP11_5end
chr6	150185517	150185520	CAGE_peak_6_at_LRP11_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr6	GH06I149231	149231265	149236040	1.64	[{'connected_gene': 'LATS1', 'score': 15.98}, {'connected_gene': 'ENSG00000268592', 'score': 15.92}, {'connected_gene': 'ENSG00000216906', 'score': 15.02}, {'connected_gene': 'LRP11', 'score': 11.31}, {'connected_gene': 'NUP43', 'score': 10.11}, {'connected_gene': 'ENSG00000233330', 'score': 9.73}, {'connected_gene': 'ENSG00000228408', 'score': 5.48}, {'connected_gene': 'ZC3H12D', 'score': 5.25}, {'connected_gene': 'GC06P149237', 'score': 0.77}, {'connected_gene': 'TAB2', 'score': 0.37}]
chr6	GH06I150409	150409366	150410139	0.75	[{'connected_gene': 'LATS1', 'score': 43.14}, {'connected_gene': 'RPS18P9', 'score': 35.92}, {'connected_gene': 'ENSG00000268592', 'score': 29.69}, {'connected_gene': 'ENSG00000216906', 'score': 28.83}, {'connected_gene': 'LRP11', 'score': 20.2}, {'connected_gene': 'ENSG00000202343', 'score': 19.78}, {'connected_gene': 'PPIL4', 'score': 13.77}, {'connected_gene': 'ENSG00000233330', 'score': 11.47}, {'connected_gene': 'AKAP12', 'score': 10.75}, {'connected_gene': 'NUP43', 'score': 9.99}, {'connected_gene': 'ZBTB2', 'score': 9.86}, {'connected_gene': 'SSR1P1', 'score': 0.34}, {'connected_gene': 'LOC100420304', 'score': 0.15}]
chr6	GH06I149248	149248601	149251200	1.3	[{'connected_gene': 'LATS1', 'score': 44.42}, {'connected_gene': 'NUP43', 'score': 39.26}, {'connected_gene': 'PPIL4', 'score': 30.84}, {'connected_gene': 'KATNA1', 'score': 22.82}, {'connected_gene': 'ENSG00000216906', 'score': 15.7}, {'connected_gene': 'ENSG00000268592', 'score': 15.67}, {'connected_gene': 'ENSG00000233330', 'score': 12.43}, {'connected_gene': 'RPS18P9', 'score': 11.85}, {'connected_gene': 'ENSG00000228408', 'score': 11.84}, {'connected_gene': 'ENSG00000231760', 'score': 11.46}, {'connected_gene': 'GINM1', 'score': 10.76}, {'connected_gene': 'LRP11', 'score': 10.62}, {'connected_gene': 'TAB2', 'score': 10.04}, {'connected_gene': 'ENSG00000283608', 'score': 0.77}, {'connected_gene': 'TAB2-AS1', 'score': 0.44}, {'connected_gene': 'GC06P149237', 'score': 0.39}]
chr6	GH06I149835	149835225	149835374	0.66	[{'connected_gene': 'LRP11', 'score': 12.95}, {'connected_gene': 'RAET1E', 'score': 12.26}, {'connected_gene': 'ENSG00000233330', 'score': 9.15}, {'connected_gene': 'ENSG00000202343', 'score': 9.15}, {'connected_gene': 'RPS18P9', 'score': 9.15}, {'connected_gene': 'ENSG00000231760', 'score': 0.44}, {'connected_gene': 'ENSG00000273132', 'score': 0.37}, {'connected_gene': 'GC06P149237', 'score': 0.03}]
chr6	GH06I149868	149868205	149869223	0.86	[{'connected_gene': 'LRP11', 'score': 0.77}, {'connected_gene': 'ENSG00000268592', 'score': 0.44}, {'connected_gene': 'RAET1E-AS1', 'score': 0.44}, {'connected_gene': 'CCT7P1', 'score': 0.39}, {'connected_gene': 'RAET1E', 'score': 0.31}]
chr6	GH06I149858	149858925	149865280	2.45	[{'connected_gene': 'LRP11', 'score': 556.23}, {'connected_gene': 'ENSG00000268592', 'score': 550.77}, {'connected_gene': 'RAET1E-AS1', 'score': 550.77}, {'connected_gene': 'ENSG00000216906', 'score': 32.14}, {'connected_gene': 'ENSG00000231760', 'score': 32.12}, {'connected_gene': 'RAET1E', 'score': 15.94}, {'connected_gene': 'LATS1', 'score': 11.75}, {'connected_gene': 'NUP43', 'score': 7.57}, {'connected_gene': 'ULBP1', 'score': 5.09}, {'connected_gene': 'ENSG00000273132', 'score': 0.44}]
chr6	GH06I149879	149879558	149879958	0.27	[{'connected_gene': 'CCT7P1', 'score': 550.77}, {'connected_gene': 'ENSG00000231760', 'score': 4.95}, {'connected_gene': 'ENSG00000268592', 'score': 0.37}, {'connected_gene': 'RAET1E-AS1', 'score': 0.37}, {'connected_gene': 'RAET1E', 'score': 0.37}, {'connected_gene': 'LRP11', 'score': 0.37}]
chr6	GH06I149894	149894809	149898422	1.67	[{'connected_gene': 'RAET1E', 'score': 567.21}, {'connected_gene': 'ENSG00000216906', 'score': 23.45}, {'connected_gene': 'LATS1', 'score': 17.2}, {'connected_gene': 'NUP43', 'score': 15.35}, {'connected_gene': 'PPIL4', 'score': 12.09}, {'connected_gene': 'KATNA1', 'score': 10.64}, {'connected_gene': 'LRP11', 'score': 6.68}, {'connected_gene': 'LOC105378051', 'score': 0.39}, {'connected_gene': 'ENSG00000268592', 'score': 0.29}, {'connected_gene': 'RAET1E-AS1', 'score': 0.29}]
chr6	GH06I149886	149886624	149891786	1.65	[{'connected_gene': 'RAET1E', 'score': 572.92}, {'connected_gene': 'ENSG00000216906', 'score': 25.74}, {'connected_gene': 'ENSG00000231760', 'score': 22.23}, {'connected_gene': 'LRP11', 'score': 11.72}, {'connected_gene': 'LOC105378051', 'score': 0.77}, {'connected_gene': 'ENSG00000268592', 'score': 0.31}, {'connected_gene': 'RAET1E-AS1', 'score': 0.31}]
chr6	GH06I149834	149834625	149834774	0.86	[{'connected_gene': 'RAET1E', 'score': 11.64}, {'connected_gene': 'ENSG00000231760', 'score': 0.44}, {'connected_gene': 'ENSG00000273132', 'score': 0.37}, {'connected_gene': 'LRP11', 'score': 0.31}, {'connected_gene': 'GC06P149237', 'score': 0.03}]
chr6	GH06I149842	149842005	149848426	1.37	[{'connected_gene': 'ENSG00000231760', 'score': 44.25}, {'connected_gene': 'LATS1', 'score': 32.95}, {'connected_gene': 'GINM1', 'score': 20.26}, {'connected_gene': 'RPS18P9', 'score': 19.04}, {'connected_gene': 'RAET1E', 'score': 18.01}, {'connected_gene': 'NUP43', 'score': 16.81}, {'connected_gene': 'ENSG00000268592', 'score': 16.26}, {'connected_gene': 'LRP11', 'score': 16.15}, {'connected_gene': 'ENSG00000216906', 'score': 15.21}, {'connected_gene': 'KATNA1', 'score': 14.98}, {'connected_gene': 'PPIL4', 'score': 12.41}, {'connected_gene': 'TAB2', 'score': 9.77}, {'connected_gene': 'ENSG00000233330', 'score': 9.09}, {'connected_gene': 'ENSG00000202343', 'score': 9.09}, {'connected_gene': 'ENSG00000273132', 'score': 0.44}, {'connected_gene': 'GC06P149237', 'score': 0.03}]
chr6	GH06I150592	150592025	150593025	0.79	[{'connected_gene': 'ENSG00000216906', 'score': 15.7}, {'connected_gene': 'ENSG00000268592', 'score': 15.66}, {'connected_gene': 'LRP11', 'score': 10.62}, {'connected_gene': 'PLEKHG1', 'score': 0.44}, {'connected_gene': 'LOC100420304', 'score': 0.18}]
chr6	GH06I149840	149840108	149841594	1.26	[{'connected_gene': 'ENSG00000231760', 'score': 33.95}, {'connected_gene': 'LRP11', 'score': 12.98}, {'connected_gene': 'RAET1E', 'score': 12.27}, {'connected_gene': 'GINM1', 'score': 10.42}, {'connected_gene': 'ENSG00000233330', 'score': 9.14}, {'connected_gene': 'ENSG00000202343', 'score': 9.14}, {'connected_gene': 'RPS18P9', 'score': 9.14}, {'connected_gene': 'ENSG00000273132', 'score': 0.39}, {'connected_gene': 'GC06P149237', 'score': 0.03}]
chr6	GH06I150250	150250413	150258403	1.64	[{'connected_gene': 'ENSG00000268592', 'score': 15.94}, {'connected_gene': 'NUP43', 'score': 15.55}, {'connected_gene': 'ENSG00000216906', 'score': 15.04}, {'connected_gene': 'PPIL4', 'score': 13.33}, {'connected_gene': 'ENSG00000231760', 'score': 12.72}, {'connected_gene': 'KATNA1', 'score': 11.45}, {'connected_gene': 'LRP11', 'score': 11.34}, {'connected_gene': 'LATS1', 'score': 11.33}, {'connected_gene': 'ENSG00000238594', 'score': 11.3}, {'connected_gene': 'PPP1R14C', 'score': 10.82}, {'connected_gene': 'RAET1G', 'score': 3.97}, {'connected_gene': 'ULBP2', 'score': 1.63}, {'connected_gene': 'RAET1L', 'score': 1.25}, {'connected_gene': 'LOC105378054', 'score': 0.37}, {'connected_gene': 'GC06M150158', 'score': 0.14}]
chr6	GH06I149830	149830640	149831818	1.22	[{'connected_gene': 'ENSG00000231760', 'score': 49.57}, {'connected_gene': 'RAET1E', 'score': 11.63}, {'connected_gene': 'ENSG00000273132', 'score': 0.34}, {'connected_gene': 'LRP11', 'score': 0.29}, {'connected_gene': 'GC06P149237', 'score': 0.03}]
chr6	GH06I149850	149850740	149857909	1.29	[{'connected_gene': 'ENSG00000273132', 'score': 550.77}, {'connected_gene': 'ENSG00000231760', 'score': 45.28}, {'connected_gene': 'RAET1E', 'score': 11.48}, {'connected_gene': 'GINM1', 'score': 9.4}, {'connected_gene': 'LRP11', 'score': 6.5}, {'connected_gene': 'ENSG00000268592', 'score': 0.44}, {'connected_gene': 'GC06P149237', 'score': 0.03}]