PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000368923	[[110712973, 110714545], [110729536, 110729645], [110734493, 110734669], [110736669, 110736765]]	[[110713977, 110714545], [110729536, 110729645], [110734493, 110734669], [110736669, 110736749]]
ENST00000368924	[[110712973, 110714545], [110725976, 110726153], [110729536, 110729645], [110734493, 110734669], [110736669, 110736765]]	[[110713977, 110714545], [110725976, 110726153], [110729536, 110729645], [110734493, 110734669], [110736669, 110736749]]
ENST00000479373	[[110712973, 110714545], [110725976, 110726153], [110734493, 110734669], [110736669, 110736765]]	[[110726076, 110726153], [110734493, 110734669], [110736669, 110736749]]
NM_003649	[[110713382, 110714545], [110725976, 110726153], [110729536, 110729645], [110734493, 110734669], [110736669, 110736753]]	[[110713977, 110714545], [110725976, 110726153], [110729536, 110729645], [110734493, 110734669], [110736669, 110736749]]
NM_004032	[[110713382, 110714545], [110729536, 110729645], [110734493, 110734669], [110736669, 110736753]]	[[110713977, 110714545], [110729536, 110729645], [110734493, 110734669], [110736669, 110736749]]

Promoter

Chrom	Start	End	Description
chr6	110736742	110736782	CAGE_peak_1_at_DDO_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr6	GH06I110508	110508599	110512417	1.05	[{'connected_gene': 'SLC22A16', 'score': 6.24}, {'connected_gene': 'DDO', 'score': 4.48}, {'connected_gene': 'GC06P110478', 'score': 0.29}, {'connected_gene': 'LOC105377940', 'score': 0.28}]
chr6	GH06I110548	110542456	110542638	0.59	[{'connected_gene': 'SLC22A16', 'score': 11.4}, {'connected_gene': 'GTF3C6', 'score': 10.62}, {'connected_gene': 'RPF2', 'score': 10.59}, {'connected_gene': 'RNU6-957P', 'score': 10.25}, {'connected_gene': 'CDK19', 'score': 5.47}, {'connected_gene': 'WASF1', 'score': 1.45}, {'connected_gene': 'DDO', 'score': 1.3}, {'connected_gene': 'LOC105377940', 'score': 0.44}, {'connected_gene': 'GC06P110478', 'score': 0.21}]
chr6	GH06I110362	110362714	110368711	0.52	[{'connected_gene': 'DDO', 'score': 9.77}, {'connected_gene': 'ZBTB24', 'score': 9.48}, {'connected_gene': 'METTL24', 'score': 6.51}]
chr6	GH06I110295	110295966	110296137	0.42	[{'connected_gene': 'DDO', 'score': 9.04}, {'connected_gene': 'WASF1', 'score': 5.91}, {'connected_gene': 'CDC40', 'score': 4.22}, {'connected_gene': 'METTL24', 'score': 1.4}, {'connected_gene': 'GC06M110279', 'score': 0.39}, {'connected_gene': 'LOC102724586', 'score': 0.28}]
chr6	GH06I110296	110296338	110296600	0.4	[{'connected_gene': 'DDO', 'score': 9.04}, {'connected_gene': 'WASF1', 'score': 6.06}, {'connected_gene': 'GC06M110279', 'score': 0.39}, {'connected_gene': 'LOC102724586', 'score': 0.28}, {'connected_gene': 'METTL24', 'score': 0.21}]
chr6	GH06I110418	110418011	110420798	0.73	[{'connected_gene': 'DDO', 'score': 30.77}, {'connected_gene': 'SLC22A16', 'score': 10.43}, {'connected_gene': 'WASF1', 'score': 4.36}, {'connected_gene': 'LOC105377936', 'score': 0.77}, {'connected_gene': 'GC06P110436', 'score': 0.37}]
chr6	GH06I110399	110399201	110400600	0.46	[{'connected_gene': 'DDO', 'score': 16.32}, {'connected_gene': 'SLC22A16', 'score': 10.85}, {'connected_gene': 'METTL24', 'score': 0.26}]
chr6	GH06I110345	110345485	110350867	0.2	[{'connected_gene': 'DDO', 'score': 7.63}, {'connected_gene': 'METTL24', 'score': 7.13}, {'connected_gene': 'LOC102724586', 'score': 0.39}]
chr6	GH06I110390	110390001	110390200	0.65	[{'connected_gene': 'DDO', 'score': 10.96}, {'connected_gene': 'METTL24', 'score': 0.29}]
chr6	GH06I110404	110404426	110405240	0.49	[{'connected_gene': 'DDO', 'score': 5.9}, {'connected_gene': 'METTL24', 'score': 0.25}]
chr6	GH06I110389	110389838	110389987	0.67	[{'connected_gene': 'DDO', 'score': 10.96}, {'connected_gene': 'METTL24', 'score': 0.29}]
chr6	GH06I110391	110390938	110391107	0.59	[{'connected_gene': 'DDO', 'score': 10.99}, {'connected_gene': 'METTL24', 'score': 0.29}]
chr6	GH06I110414	110414754	110416031	1.77	[{'connected_gene': 'DDO', 'score': 578.51}, {'connected_gene': 'LOC105377936', 'score': 550.77}, {'connected_gene': 'METTL24', 'score': 0.22}]
chr6	GH06I110337	110337387	110344535	0.64	[{'connected_gene': 'DDO', 'score': 5.83}, {'connected_gene': 'LOC102724586', 'score': 0.44}, {'connected_gene': 'METTL24', 'score': 0.37}]
chr6	GH06I110095	110095667	110099388	1.11	[{'connected_gene': 'DDO', 'score': 4.29}, {'connected_gene': 'GC06P110094', 'score': 0.77}, {'connected_gene': 'PIR45173', 'score': 0.26}]
chr6	GH06I110527	110527543	110531417	1.44	[{'connected_gene': 'RPF2', 'score': 5.01}, {'connected_gene': 'LOC105377938', 'score': 4.6}, {'connected_gene': 'DDO', 'score': 4.45}, {'connected_gene': 'AMD1', 'score': 4.33}, {'connected_gene': 'LOC105377940', 'score': 0.37}, {'connected_gene': 'GC06P110478', 'score': 0.23}]
chr6	GH06I110355	110355078	110358608	1.82	[{'connected_gene': 'METTL24', 'score': 557.5}, {'connected_gene': 'ZBTB24', 'score': 14.64}, {'connected_gene': 'MFSD4B', 'score': 12.81}, {'connected_gene': 'ENSG00000272356', 'score': 10.15}, {'connected_gene': 'FCF1P5', 'score': 10.12}, {'connected_gene': 'DDO', 'score': 7.78}, {'connected_gene': 'LOC102724586', 'score': 0.34}]
chr6	GH06I110541	110541367	110541674	0.2	[{'connected_gene': 'GTF3C6', 'score': 10.58}, {'connected_gene': 'RPF2', 'score': 10.37}, {'connected_gene': 'RNU6-957P', 'score': 10.36}, {'connected_gene': 'DDO', 'score': 5.02}, {'connected_gene': 'LOC105377940', 'score': 0.44}, {'connected_gene': 'GC06P110478', 'score': 0.21}]
chr6	GH06I110560	110560135	110562108	0.69	[{'connected_gene': 'GC06M110563', 'score': 550.77}, {'connected_gene': 'DDO', 'score': 4.22}, {'connected_gene': 'RPF2', 'score': 4.06}, {'connected_gene': 'LOC105377939', 'score': 0.39}]
chr6	GH06I110534	110534558	110535401	0.79	[{'connected_gene': 'ENSG00000220506', 'score': 11.94}, {'connected_gene': 'GTF3C6', 'score': 11.01}, {'connected_gene': 'RPF2', 'score': 10.49}, {'connected_gene': 'BRD7P4', 'score': 10.06}, {'connected_gene': 'RNU6-957P', 'score': 9.98}, {'connected_gene': 'MFSD4B', 'score': 9.85}, {'connected_gene': 'DDO', 'score': 5.26}, {'connected_gene': 'LOC105377940', 'score': 0.39}, {'connected_gene': 'GC06P110478', 'score': 0.22}]