PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000376835	[[24929865, 24930211], [24937922, 24938095], [24939563, 24939680], [24940270, 24940562]]	[[24930075, 24930211], [24937922, 24938095], [24939563, 24939680], [24940270, 24940348]]
ENST00000480798	[[24929865, 24930211], [24937922, 24938095], [24939563, 24939680], [24940270, 24940564]]	[[24930141, 24930211], [24937922, 24938095], [24939563, 24939680], [24940270, 24940348]]
NM_003650	[[24929865, 24930211], [24937922, 24938095], [24939563, 24939680], [24940270, 24940564]]	[[24930141, 24930211], [24937922, 24938095], [24939563, 24939680], [24940270, 24940348]]

Promoter

Chrom	Start	End	Description
chr20	24929892	24929918	CAGE_peak_1_at_CST7_5end
chr20	24929935	24929964	CAGE_peak_2_at_CST7_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr20	GH20I025198	25198739	25199482	0.54	[{'connected_gene': 'ENTPD6', 'score': 12.19}, {'connected_gene': 'PYGB', 'score': 11.54}, {'connected_gene': 'ACSS1', 'score': 10.42}, {'connected_gene': 'CST7', 'score': 4.33}, {'connected_gene': 'LOC101926889', 'score': 0.77}, {'connected_gene': 'ENSG00000202414', 'score': 0.37}]
chr20	GH20I025194	25194657	25198084	2.23	[{'connected_gene': 'ENTPD6', 'score': 562.83}, {'connected_gene': 'LOC101926889', 'score': 550.77}, {'connected_gene': 'PYGB', 'score': 31.27}, {'connected_gene': 'FAM182B', 'score': 16.63}, {'connected_gene': 'NINL', 'score': 13.28}, {'connected_gene': 'ABHD12', 'score': 12.27}, {'connected_gene': 'ACSS1', 'score': 11.31}, {'connected_gene': 'VN1R108P', 'score': 9.8}, {'connected_gene': 'VSX1', 'score': 7.83}, {'connected_gene': 'CST7', 'score': 5.21}]
chr20	GH20I025048	25048241	25049961	1.04	[{'connected_gene': 'CST7', 'score': 7.45}, {'connected_gene': 'ENTPD6', 'score': 6.42}, {'connected_gene': 'ACSS1', 'score': 0.44}, {'connected_gene': 'PIR53263', 'score': 0.44}]
chr20	GH20I024984	24984401	24986800	0.74	[{'connected_gene': 'CST7', 'score': 19.85}, {'connected_gene': 'ACSS1', 'score': 11.58}, {'connected_gene': 'APMAP', 'score': 7.23}, {'connected_gene': 'VN1R108P', 'score': 5.39}, {'connected_gene': 'VSX1', 'score': 4.39}, {'connected_gene': 'RNU6-1257P', 'score': 0.39}]
chr20	GH20I024507	24507577	24508096	0.4	[{'connected_gene': 'CST7', 'score': 5.15}, {'connected_gene': 'ENSG00000270001', 'score': 5.13}, {'connected_gene': 'ENSG00000228539', 'score': 0.44}, {'connected_gene': 'SYNDIG1', 'score': 0.28}, {'connected_gene': 'GC20M024591', 'score': 0.16}]
chr20	GH20I024948	24948589	24956969	1.91	[{'connected_gene': 'CST7', 'score': 573.09}, {'connected_gene': 'APMAP', 'score': 19.14}, {'connected_gene': 'ACSS1', 'score': 10.78}, {'connected_gene': 'VN1R108P', 'score': 5.63}, {'connected_gene': 'PYGB', 'score': 4.79}, {'connected_gene': 'PIR45392', 'score': 0.39}]
chr20	GH20I025022	25022420	25023512	0.72	[{'connected_gene': 'CST7', 'score': 12.39}, {'connected_gene': 'PIR53263', 'score': 0.37}, {'connected_gene': 'APMAP', 'score': 0.31}, {'connected_gene': 'ACSS1', 'score': 0.28}]
chr20	GH20I025019	25019767	25020288	0.2	[{'connected_gene': 'CST7', 'score': 7.11}, {'connected_gene': 'APMAP', 'score': 6.6}, {'connected_gene': 'PIR53263', 'score': 0.37}, {'connected_gene': 'ACSS1', 'score': 0.28}]
chr20	GH20I025024	25024738	25028196	0.46	[{'connected_gene': 'CST7', 'score': 11.84}, {'connected_gene': 'APMAP', 'score': 6.29}, {'connected_gene': 'PIR53263', 'score': 0.39}, {'connected_gene': 'ACSS1', 'score': 0.29}]
chr20	GH20I024969	24969346	24973202	0.38	[{'connected_gene': 'CST7', 'score': 19.04}, {'connected_gene': 'APMAP', 'score': 7.97}, {'connected_gene': 'VN1R108P', 'score': 5.39}, {'connected_gene': 'GC20P024974', 'score': 0.77}, {'connected_gene': 'PIR45392', 'score': 0.44}]
chr20	GH20I024996	24996762	24997732	0.4	[{'connected_gene': 'CST7', 'score': 14.75}, {'connected_gene': 'APMAP', 'score': 7.13}, {'connected_gene': 'PIR53263', 'score': 0.26}]
chr20	GH20I025000	25000025	25001254	1.22	[{'connected_gene': 'CST7', 'score': 8.08}, {'connected_gene': 'APMAP', 'score': 7.42}, {'connected_gene': 'PIR53263', 'score': 0.28}]
chr20	GH20I024994	24994465	24995514	1.27	[{'connected_gene': 'CST7', 'score': 18.95}, {'connected_gene': 'ZNF337', 'score': 15.75}, {'connected_gene': 'NINL', 'score': 10.09}, {'connected_gene': 'APMAP', 'score': 8.29}, {'connected_gene': 'PIR53263', 'score': 0.26}]
chr20	GH20I024716	24716344	24724930	0.54	[{'connected_gene': 'CST7', 'score': 6.94}, {'connected_gene': 'ENSG00000231015', 'score': 0.26}, {'connected_gene': 'PIR56829', 'score': 0.08}]
chr20	GH20I025029	25029938	25034673	1.74	[{'connected_gene': 'ACSS1', 'score': 568.29}, {'connected_gene': 'CST7', 'score': 12.29}, {'connected_gene': 'APMAP', 'score': 6.13}, {'connected_gene': 'FAM182B', 'score': 4.75}, {'connected_gene': 'PIR53263', 'score': 0.44}]
chr20	GH20I025013	25013482	25014311	0.2	[{'connected_gene': 'ACSS1', 'score': 12.37}, {'connected_gene': 'CST7', 'score': 10.77}, {'connected_gene': 'APMAP', 'score': 6.12}, {'connected_gene': 'PIR53263', 'score': 0.31}]
chr20	GH20I025006	25005265	25005454	0.66	[{'connected_gene': 'ACSS1', 'score': 12.15}, {'connected_gene': 'CST7', 'score': 8.06}, {'connected_gene': 'APMAP', 'score': 6.39}, {'connected_gene': 'PIR53263', 'score': 0.29}]
chr20	GH20I025005	25005600	25007136	0.2	[{'connected_gene': 'ACSS1', 'score': 12.15}, {'connected_gene': 'CST7', 'score': 10.65}, {'connected_gene': 'APMAP', 'score': 0.39}, {'connected_gene': 'PIR53263', 'score': 0.29}]
chr20	GH20I025007	25007929	25013070	0.65	[{'connected_gene': 'ACSS1', 'score': 12.37}, {'connected_gene': 'CST7', 'score': 12.12}, {'connected_gene': 'APMAP', 'score': 6.63}, {'connected_gene': 'PIR53263', 'score': 0.31}]
chr20	GH20I025051	25051671	25060101	2.4	[{'connected_gene': 'ACSS1', 'score': 558.24}, {'connected_gene': 'VSX1', 'score': 11.47}, {'connected_gene': 'CST7', 'score': 7.78}, {'connected_gene': 'ENTPD6', 'score': 6.63}, {'connected_gene': 'FAM182B', 'score': 5.53}, {'connected_gene': 'ZNF337', 'score': 5.25}, {'connected_gene': 'NINL', 'score': 4.02}, {'connected_gene': 'PIR53263', 'score': 0.37}]
chr20	GH20I025190	25190928	25192331	0.58	[{'connected_gene': 'PYGB', 'score': 11.14}, {'connected_gene': 'ACSS1', 'score': 10.8}, {'connected_gene': 'ENTPD6', 'score': 5.63}, {'connected_gene': 'VSX1', 'score': 5.54}, {'connected_gene': 'CST7', 'score': 4.84}, {'connected_gene': 'LOC101926889', 'score': 0.44}, {'connected_gene': 'LOC100128078', 'score': 0.31}]
chr20	GH20I024989	24989063	24994234	2.27	[{'connected_gene': 'APMAP', 'score': 558.48}, {'connected_gene': 'CST7', 'score': 19.93}, {'connected_gene': 'ACSS1', 'score': 12.24}, {'connected_gene': 'VN1R108P', 'score': 5.39}, {'connected_gene': 'PYGB', 'score': 4.34}, {'connected_gene': 'RNU6-1257P', 'score': 0.37}]
chr20	GH20I025016	25016389	25019760	1.05	[{'connected_gene': 'APMAP', 'score': 19.25}, {'connected_gene': 'ACSS1', 'score': 12.39}, {'connected_gene': 'CST7', 'score': 10.09}, {'connected_gene': 'PIR53263', 'score': 0.34}]
chr20	GH20I025061	25061025	25062072	0.8	[{'connected_gene': 'VSX1', 'score': 8.18}, {'connected_gene': 'CST7', 'score': 5.94}, {'connected_gene': 'ENSG00000275358', 'score': 0.77}, {'connected_gene': 'ACSS1', 'score': 0.77}]
chr20	GH20I025147	25147714	25150676	0.85	[{'connected_gene': 'LOC284798', 'score': 556.2}, {'connected_gene': 'ENTPD6', 'score': 7.63}, {'connected_gene': 'VSX1', 'score': 7.03}, {'connected_gene': 'FAM182B', 'score': 5.83}, {'connected_gene': 'CST7', 'score': 5.0}, {'connected_gene': 'LOC391239', 'score': 0.23}]
chr20	GH20I024933	24933993	24934771	0.31	[{'connected_gene': 'RNU6-1257P', 'score': 11.85}, {'connected_gene': 'ACSS1', 'score': 10.87}, {'connected_gene': 'APMAP', 'score': 6.58}, {'connected_gene': 'LOC105372578', 'score': 0.44}, {'connected_gene': 'CST7', 'score': 0.39}]
chr20	GH20I024929	24929482	24932760	0.94	[{'connected_gene': 'LOC105372578', 'score': 550.77}, {'connected_gene': 'CST7', 'score': 19.99}, {'connected_gene': 'RNU6-1257P', 'score': 11.84}, {'connected_gene': 'ACSS1', 'score': 10.87}, {'connected_gene': 'APMAP', 'score': 8.38}, {'connected_gene': 'VN1R108P', 'score': 5.41}]
chr20	GH20I024957	24957263	24966432	1.01	[{'connected_gene': 'PIR45392', 'score': 550.77}, {'connected_gene': 'CST7', 'score': 21.89}, {'connected_gene': 'APMAP', 'score': 11.15}, {'connected_gene': 'ACSS1', 'score': 10.79}, {'connected_gene': 'VN1R108P', 'score': 5.43}]
chr20	GH20I025035	25035078	25041194	1.08	[{'connected_gene': 'PIR53263', 'score': 550.77}, {'connected_gene': 'ACSS1', 'score': 17.02}, {'connected_gene': 'CST7', 'score': 6.78}, {'connected_gene': 'APMAP', 'score': 5.86}]
chr20	GH20I025258	25258194	25259238	0.2	[{'connected_gene': 'PIR44667', 'score': 550.77}, {'connected_gene': 'ABHD12', 'score': 37.03}, {'connected_gene': 'FAM182B', 'score': 10.47}, {'connected_gene': 'CST7', 'score': 4.82}, {'connected_gene': 'ZNF337', 'score': 4.76}, {'connected_gene': 'ENSG00000274507', 'score': 0.44}, {'connected_gene': 'PYGB', 'score': 0.39}]